View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_21 (Length: 337)
Name: NF19965_low_21
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 51090062 - 51089745
Alignment:
| Q |
1 |
atgaaaagaaaaaacattttctagaattatggttcagtggttggtaatggtatgtttgaaagttaattggagagtgcaagttaaacatgaggtgagagga |
100 |
Q |
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| T |
51090062 |
atgaaaagaaaaa-cgttttctagaattatggttaagtggttggtaatggtatgtttgaaagttaattggagagtgcaagttaaacatgaggtgagagga |
51089964 |
T |
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| Q |
101 |
gtgtagaaactagaaaggt--tgagagtggcaggtaggcactattctatttctctgctttgtttggcccacatctctgacagacaagacaactcattcca |
198 |
Q |
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| T |
51089963 |
atgtagaaactagaaaggtagtgagagtggctggtaggtaccattccatttctctgctttgtttggcccacatctctgacagacaa-----ctcattcca |
51089869 |
T |
|
| Q |
199 |
cctcaacctttgcaatttgttttgtttttattttcctcctcactaatccaatccaatcatttcaaactcaacaactgctatcaaccaattcattcattcc |
298 |
Q |
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| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51089868 |
cttcaacctttgcaatttgttttgtttttattttcctcttcactaatccaatccaatcatttcaaactcaacaactgctatcaaccaattcattcattcc |
51089769 |
T |
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| Q |
299 |
tgacatcattatgtgcgtacatat |
322 |
Q |
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|||||||||||| ||| ||||||| |
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| T |
51089768 |
tgacatcattatatgcatacatat |
51089745 |
T |
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