View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19965_low_22 (Length: 334)

Name: NF19965_low_22
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19965_low_22
NF19965_low_22
[»] chr7 (2 HSPs)
chr7 (11-324)||(28286963-28287276)
chr7 (117-177)||(10476014-10476074)
[»] chr2 (2 HSPs)
chr2 (229-315)||(19520808-19520895)
chr2 (114-174)||(42063990-42064050)
[»] chr1 (4 HSPs)
chr1 (182-279)||(44413677-44413774)
chr1 (95-174)||(21937922-21938001)
chr1 (89-167)||(9001589-9001667)
chr1 (211-291)||(41502601-41502681)
[»] chr4 (3 HSPs)
chr4 (214-272)||(8090762-8090820)
chr4 (114-174)||(11314442-11314502)
chr4 (114-174)||(27918508-27918568)
[»] chr8 (2 HSPs)
chr8 (214-313)||(44276617-44276719)
chr8 (114-174)||(5374516-5374576)
[»] chr3 (3 HSPs)
chr3 (214-291)||(32648891-32648968)
chr3 (215-255)||(21095791-21095831)
chr3 (114-166)||(25630010-25630062)
[»] chr6 (2 HSPs)
chr6 (211-283)||(1830222-1830294)
chr6 (120-166)||(6530063-6530109)
[»] chr5 (3 HSPs)
chr5 (89-174)||(14045177-14045262)
chr5 (122-158)||(39799759-39799795)
chr5 (95-167)||(40279683-40279755)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 28286963 - 28287276
Alignment:
Q  11 tgttggattatgattcaaactctttgaaaccataaatttgacacttttagacaaaattgatatcatgtattctatccgtctaagttatatgccattttaa 110  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28286963 tgttggattatgattcaaattctttgaaaccataaatttgtcacttttagacaaaattgatatcatgtattctatccgtctaagttatatgtcattttaa 28287062  T
Q  111 gagaatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatgattatttattgcgacacctcctctttagttgcgacatcgttga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||     
T  28287063 gagaatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatgattatttgttgcgacacctcctctttagttgcgacacctttgg 28287162  T
Q  211 caacgtgtggtctgcggttttgcagtggcttcgcttatccttcgttgctccagctgggagtaagaatcactttcttcagttggcaacatggctgggttac 310  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  28287163 caacatgtggtctgcggttttgcagtggcttcgcttatccttcgttgctccagctgggagtaggaatcactttcttcagttggaaacatggctaggttac 28287262  T
Q  311 cgcattcatctcac 324  Q
    || |||| ||||||    
T  28287263 cgtattcttctcac 28287276  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 10476074 - 10476014
Alignment:
Q  117 ttgtttgtctcaaattatacattattttataatatcaatgaatcattaatgattatttatt 177  Q
    |||||||||  ||||||||  | ||||||  ||||||||| ||||||||||||||||||||    
T  10476074 ttgtttgtcataaattatatgtcattttacgatatcaatgtatcattaatgattatttatt 10476014  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 19520895 - 19520808
Alignment:
Q  229 tttgcagtggcttcgcttatccttcgttgctccagctgggagtaagaatcactttcttcag-ttggcaacatggctgggttaccgcat 315  Q
    ||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||||| ||||  | |||| |||||||||||||    
T  19520895 tttgcagtggcttcgtttatcctttgtcgctccagctgggagtaggaatcactttcttcagtttggtcagatggttgggttaccgcat 19520808  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 42063990 - 42064050
Alignment:
Q  114 aatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatgattattt 174  Q
    ||||||||| ||| ||||||||  | ||||||||||| ||||||||||| |||| ||||||    
T  42063990 aatttgtttatcttaaattataagtcattttataataccaatgaatcatcaatgtttattt 42064050  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 44413677 - 44413774
Alignment:
Q  182 cacctcctctttagttgcgacatcgttgacaacgtgtggtctgcggttttgcagtggcttcgcttatccttcgttgctccagctgggagtaagaatca 279  Q
    ||||||||||| || ||| ||| | |||||||||| || ||||||||||||||||| |||| |||||| ||||| ||||| | ||| |||||||||||    
T  44413677 cacctcctcttcagctgcaacacctttgacaacgtatgatctgcggttttgcagtgacttcacttatcattcgtagctccggttggaagtaagaatca 44413774  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 21937922 - 21938001
Alignment:
Q  95 ttatatgccattttaagagaatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatgattattt 174  Q
    ||||||| |||| ||| | ||||| |||| |||||||||||  | |||||||||||||||||||||||| ||| ||||||    
T  21937922 ttatatgtcattctaacaaaatttatttgcctcaaattatatgtcattttataatatcaatgaatcattgatgcttattt 21938001  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 9001589 - 9001667
Alignment:
Q  89 tctaagttatatgccattttaagagaatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatg 167  Q
    ||||| ||||||| |||||||| | ||||||||||| | ||||||||  | | |||| |||||||||||||||||||||    
T  9001589 tctaaattatatgtcattttaacaaaatttgtttgttttaaattatatgtcactttacaatatcaatgaatcattaatg 9001667  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 41502681 - 41502601
Alignment:
Q  211 caacgtgtggtctgcggttttgcagtggcttcgcttatccttcgttgctccagctgggagtaagaatcactttcttcagtt 291  Q
    |||||| ||||||||||| ||||||||||||  |||| ||||  |||||||| | || |||| ||||||||||| ||||||    
T  41502681 caacgtatggtctgcggtcttgcagtggctttacttaccctttattgctccatccggaagtaggaatcactttcatcagtt 41502601  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 8090762 - 8090820
Alignment:
Q  214 cgtgtggtctgcggttttgcagtggcttcgcttatccttcgttgctccagctgggagta 272  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||| || |||||||    
T  8090762 cgtgtggtctgcggttttgcagtggcttcgcttatctttcgtcactccggcagggagta 8090820  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 11314502 - 11314442
Alignment:
Q  114 aatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatgattattt 174  Q
    ||||| ||||| |||||||||| || |||||| |||||||| |||||||||||| ||||||    
T  11314502 aatttatttgtttcaaattatatatcattttacaatatcaaagaatcattaatgtttattt 11314442  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 27918568 - 27918508
Alignment:
Q  114 aatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatgattattt 174  Q
    ||||||||| | ||||||||||  | |||||| ||||||||||||||||||||| ||||||    
T  27918568 aatttgtttctttcaaattatatgtcattttacaatatcaatgaatcattaatgcttattt 27918508  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 44276719 - 44276617
Alignment:
Q  214 cgtgtggtctgcggttttgcagtggcttcgcttatccttcgttgctccagct--gggagtaagaatcactttcttcagtt-ggcaacatggctgggttac 310  Q
    ||||||||  |||||||||||||||||||  |||||||| || |||| || |  ||||||| |||||||||||||||||| ||| | |||| ||||||||    
T  44276719 cgtgtggttcgcggttttgcagtggcttcatttatcctttgtcgctctagttttgggagtaggaatcactttcttcagttcggccaaatggttgggttac 44276620  T
Q  311 cgc 313  Q
    |||    
T  44276619 cgc 44276617  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 5374516 - 5374576
Alignment:
Q  114 aatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatgattattt 174  Q
    |||||||||||  |||||||||  | |||||| ||||||| ||||||||||||| ||||||    
T  5374516 aatttgtttgttccaaattatatgtcattttacaatatcattgaatcattaatgtttattt 5374576  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 32648891 - 32648968
Alignment:
Q  214 cgtgtggtctgcggttttgcagtggcttcgcttatccttcgttgctccagctgggagtaagaatcactttcttcagtt 291  Q
    ||||||||| | ||||||| |||||||||| ||| | || || ||||||| |||||||| ||||||||||||| ||||    
T  32648891 cgtgtggtccgtggttttgtagtggcttcgtttaacttttgtcgctccagttgggagtaggaatcactttctttagtt 32648968  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 21095831 - 21095791
Alignment:
Q  215 gtgtggtctgcggttttgcagtggcttcgcttatccttcgt 255  Q
    |||||||| | ||||||||||||||||| ||||||||||||    
T  21095831 gtgtggtccgtggttttgcagtggcttcacttatccttcgt 21095791  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 25630010 - 25630062
Alignment:
Q  114 aatttgtttgtctcaaattatacattattttataatatcaatgaatcattaat 166  Q
    ||||| ||||||| ||||||||  |||||||| |||||||| |||||||||||    
T  25630010 aatttatttgtcttaaattatatgttattttacaatatcaaagaatcattaat 25630062  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 1830222 - 1830294
Alignment:
Q  211 caacgtgtggtctgcggttttgcagtggcttcgcttatccttcgttgctccagctgggagtaagaatcacttt 283  Q
    |||||| ||||||||||||||||| ||||||| |||||||||  | |||||| |  |||||| ||||||||||    
T  1830222 caacgtttggtctgcggttttgcaatggcttcacttatcctttatcgctccatcctggagtaggaatcacttt 1830294  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 6530063 - 6530109
Alignment:
Q  120 tttgtctcaaattatacattattttataatatcaatgaatcattaat 166  Q
    |||||||||| ||||| || |||||||||||||||| ||||||||||    
T  6530063 tttgtctcaatttatatatcattttataatatcaataaatcattaat 6530109  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 14045262 - 14045177
Alignment:
Q  89 tctaagttatatgccattttaagagaatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatgattattt 174  Q
    ||||||||||  | |||| ||| | ||||| ||||||||||||||||  | |||||| ||||||||| ||| ||||||| ||||||    
T  14045262 tctaagttattggtcattctaataaaatttatttgtctcaaattatatgtcattttacaatatcaataaataattaatgcttattt 14045177  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 39799795 - 39799759
Alignment:
Q  122 tgtctcaaattatacattattttataatatcaatgaa 158  Q
    |||||||||||||| || |||||||||||||||||||    
T  39799795 tgtctcaaattatatatcattttataatatcaatgaa 39799759  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 40279755 - 40279683
Alignment:
Q  95 ttatatgccattttaagagaatttgtttgtctcaaattatacattattttataatatcaatgaatcattaatg 167  Q
    ||||||| |||| ||| | ||||||||| | |||||||||| || | |||| ||||| |||||||||||||||    
T  40279755 ttatatgtcattctaacaaaatttgtttatttcaaattatatatcactttacaatattaatgaatcattaatg 40279683  T

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