View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_25 (Length: 300)
Name: NF19965_low_25
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_25 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 290
Target Start/End: Original strand, 33114093 - 33114360
Alignment:
| Q |
23 |
tatatgtagattgttttaacccaattctcactttaaattttgataagctagcaggaggactcttcaaatttatttttcttctgatgagattcatggatat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33114093 |
tatatgtagattgttttaacccaattctcactttaaattttgataagctagcaggaggactcttcaaatttatttttcttctgatgagattcatggatat |
33114192 |
T |
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| Q |
123 |
tctgattttctccattcttggagaaagtctttgcgctcagtgtttcaaatttactagacaagatattttctgagaattgttcaagtctgaactttccttg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33114193 |
tctgattttctccattcttggagaaagtctttgcgctcagtctttcaaatttaccaggcaagatcttttctgagaattgttcaagtctgaactttccttg |
33114292 |
T |
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| Q |
223 |
tgataatttatttgcagcttcaacaaatgcttgaagtgcaaggttacttgggttatatgatatatatt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33114293 |
tgataatttatttgcagcttcaacaaatgcttgaagtgcaaggttacttgggttatatgatatatatt |
33114360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 24897792 - 24897681
Alignment:
| Q |
133 |
tccattcttggagaaagtctttgcgctcagtgtttcaaatttactagacaagatattttctgagaattgttcaagtctgaactttccttgtgataattta |
232 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24897792 |
tccattcttggagaaagtctttgcgctcagtctttcaaatttactagacaaaatcttttctgagaattgttcaagtctgaactttccttgtgataattta |
24897693 |
T |
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| Q |
233 |
tttgcagcttca |
244 |
Q |
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|||||||||||| |
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| T |
24897692 |
tttgcagcttca |
24897681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 24987398 - 24987287
Alignment:
| Q |
133 |
tccattcttggagaaagtctttgcgctcagtgtttcaaatttactagacaagatattttctgagaattgttcaagtctgaactttccttgtgataattta |
232 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24987398 |
tccattcttggagaaagtctttgcgctcagtctttcaaatttactagacaaaatcttttctgagaattgttcaagtctgaactttacttgtgataattta |
24987299 |
T |
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| Q |
233 |
tttgcagcttca |
244 |
Q |
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|||||||||||| |
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| T |
24987298 |
tttgcagcttca |
24987287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 24909895 - 24909784
Alignment:
| Q |
133 |
tccattcttggagaaagtctttgcgctcagtgtttcaaatttactagacaagatattttctgagaattgttcaagtctgaactttccttgtgataattta |
232 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24909895 |
tccattcttggagaaagtctttgcgctcagtctttcaaattttcttgacaaaatcttttctgagaattgttcaagtctgaactttccttgtgataattta |
24909796 |
T |
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| Q |
233 |
tttgcagcttca |
244 |
Q |
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|||||||||||| |
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| T |
24909795 |
tttgcagcttca |
24909784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 149020 - 148961
Alignment:
| Q |
189 |
tttctgagaattgttcaagtctgaactttccttgtgataatttatttgcagcttcaacaa |
248 |
Q |
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|||| |||| || ||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
149020 |
tttcggagatttcttcaagtcttaactttccttgtgatgatttatttgcagcttcaacaa |
148961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 140411 - 140352
Alignment:
| Q |
189 |
tttctgagaattgttcaagtctgaactttccttgtgataatttatttgcagcttcaacaa |
248 |
Q |
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|||| |||| || ||||||||| ||||||||||||||| |||| ||||||| |||||||| |
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| T |
140411 |
tttcggagatttcttcaagtcttaactttccttgtgatgatttttttgcagtttcaacaa |
140352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 23546 - 23430
Alignment:
| Q |
136 |
attcttggagaaagtcttt-gcgctcagtgtttcaaattt-actag-ac--aagatatttt--ctgagaattgtt-caagtctgaactttccttgtgata |
227 |
Q |
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||||||||||||||||||| ||||||||| |||||||||| ||||| || || || |||| |||||||||||| |||||||||||||| ||||||||| |
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| T |
23546 |
attcttggagaaagtcttttgcgctcagtctttcaaattttactaggaccaaaaatctttttactgagaattgtttcaagtctgaactttacttgtgata |
23447 |
T |
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| Q |
228 |
attta--tttgcagctt |
242 |
Q |
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||||| |||||||||| |
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| T |
23446 |
atttaattttgcagctt |
23430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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