View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_26 (Length: 300)
Name: NF19965_low_26
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 47125758 - 47126030
Alignment:
| Q |
18 |
cacattttatcataacaatttataaaattggacttgtataagtttaaaaaagtaatgtaactattattcgaatatatatataacttgagtgtaactcaag |
117 |
Q |
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| T |
47125758 |
cacattttatcataacaatttataaaattggacttgtataagtttaaaaaaataatgtaactattattggtatatatatat--cttgagtgtaactcaag |
47125855 |
T |
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| Q |
118 |
ttctgaatctgatttccattgaaataaagtttcaattgtccaagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgaccttttatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47125856 |
ttctgaatctgatttccattgaaataaagtttcaattgtccgagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgaccttttatc |
47125955 |
T |
|
| Q |
218 |
accttttccttttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgct |
292 |
Q |
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| T |
47125956 |
atcttttccttttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgct |
47126030 |
T |
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