View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19965_low_27 (Length: 285)

Name: NF19965_low_27
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19965_low_27
NF19965_low_27
[»] chr1 (3 HSPs)
chr1 (15-285)||(5391350-5391620)
chr1 (15-255)||(5395191-5395431)
chr1 (16-252)||(5401341-5401577)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 5391620 - 5391350
Alignment:
Q  15 agaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacg 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  5391620 agaggctcaaaactgcaaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtgtcccttcaaacg 5391521  T
Q  115 ggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391520 ggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatt 5391421  T
Q  215 tctatcacacacaagaggatatcttgctagaagaggttggtaaattaaactaaacaaacaaattattgtca 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391420 tctatcacacacaagaggatatcttgctagaagaggttggtaaattaaactaaacaaacaaattattgtca 5391350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 5395431 - 5395191
Alignment:
Q  15 agaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||     
T  5395431 agaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgtcccttcaaaca 5395332  T
Q  115 ggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatt 214  Q
    ||||  ||||||||| | |||||||| ||||   |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5395331 ggaactaagcactacctaggatccttcgaaacgatcggtaagatcaaggcccatgagtcccccttcacggaggatgtgccacgccttgtcacacccaatt 5395232  T
Q  215 tctatcacacacaagaggatatcttgctagaagaggttggt 255  Q
    ||||| ||||||| |||||||||||| ||||||||||||||    
T  5395231 tctattacacacaggaggatatcttgttagaagaggttggt 5395191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 5401577 - 5401341
Alignment:
Q  16 gaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgg 115  Q
    ||||||||||| || || || || ||| | ||||| ||||||||||||| |||||| ||||||||| |||  |||||||  ||||| || |||||||| |    
T  5401577 gaggctcaaaattgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactg 5401478  T
Q  116 gaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaattt 215  Q
    |   |||||||||  | ||| |||| |||||  ||||||||||||| || ||||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  5401477 gtgccaagcactatgtaggacccttcgaaatcatcggtaagatcaaacctcatgagtcccccttcacagaggatgtgccacgcctcgacacacccaattt 5401378  T
Q  216 ctatcacacacaagaggatatcttgctagaagaggtt 252  Q
    |||| |||||  ||||||||||||| | |||||||||    
T  5401377 ctattacacattagaggatatcttgttcgaagaggtt 5401341  T

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