View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_35 (Length: 229)
Name: NF19965_low_35
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_35 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 4939097 - 4938941
Alignment:
| Q |
34 |
attctataatctatgagtcaaaacagaaattatcctataatcagagattagtcaatattgttatgtcacttatgtgtgatgatcctaagttgttttagca |
133 |
Q |
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| T |
4939097 |
attctataatctatgagtcaaaacagaaa-----atataatcagagattagtcaatattgttatgtcacttatgtgtgatgatcctaagttgttttagca |
4939003 |
T |
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| Q |
134 |
aactacgttagattattaattttaccataaagtaatcatcacagtacattaggtgtaaagga |
195 |
Q |
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| T |
4939002 |
acctacgttagattattaattttactataaagtaatcatcacagtacgttaggtgtaaagga |
4938941 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 23763536 - 23763459
Alignment:
| Q |
34 |
attctataatctatgagtcaaaacagaaattatcctataatcagagattagtcaatattgttatgtcacttatgtgtg |
111 |
Q |
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| T |
23763536 |
attctataatctatgagtcaaaacataaatcatcttataatcagagattagtcaatattgttttgtcacttatgtgtg |
23763459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 15545 - 15650
Alignment:
| Q |
34 |
attctataatctatgagtcaaaacagaaattatcctataatcagagattagtcaatattgttatgtcacttatgtgtgatgatcctaagttgttttagca |
133 |
Q |
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||||||||| |||| |||||||||| |||| |||| ||||||||||||||| |||||||||| ||||||||||||||| | || |||||||||||||||| |
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| T |
15545 |
attctataacctataagtcaaaacataaatcatccgataatcagagattagccaatattgttttgtcacttatgtgtgctcatactaagttgttttagca |
15644 |
T |
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| Q |
134 |
aactac |
139 |
Q |
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| |||| |
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| T |
15645 |
acctac |
15650 |
T |
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