View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_37 (Length: 220)
Name: NF19965_low_37
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 2572729 - 2572943
Alignment:
| Q |
1 |
tgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaaaactttc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2572729 |
tgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaagactttc |
2572828 |
T |
|
| Q |
101 |
tctataatttcaccttccatattttcagaatcaatctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtact |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2572829 |
tctataatttcaccttccatgttttcagaatctatctttggaactctttttatcacttccattattctttctcctgctgcacttgcttctgagaagtact |
2572928 |
T |
|
| Q |
201 |
tcacatttgataaac |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2572929 |
tcacatttgataaac |
2572943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 34 - 220
Target Start/End: Original strand, 2600328 - 2600514
Alignment:
| Q |
34 |
cacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaaaactttctctataatttcaccttccatattttcagaatca |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2600328 |
cacactttctggtcttgatggatacacaaattcaacattgttgaactcaacttcccccaagactttctctagaatttcaccttccatattttcagaatca |
2600427 |
T |
|
| Q |
134 |
atctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtacttcacatttgataaaccagct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2600428 |
atctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtacttcacatttgataaaccagct |
2600514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2586329 - 2586110
Alignment:
| Q |
1 |
tgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaaaactttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
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|
| T |
2586329 |
tgatggaacctttaagcaaaaatcttttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaattcaacttcccccgacactttc |
2586230 |
T |
|
| Q |
101 |
tctataatttcaccttccatattttcagaatcaatctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtact |
200 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2586229 |
tctataatttcaccttccatgttttcggaatcaatctttggaactctttttatcacttccattattctttctcctgctgcacttgcttctgagaagtact |
2586130 |
T |
|
| Q |
201 |
tcacatttgataaaccagct |
220 |
Q |
| |
|
|||||||||| | ||||||| |
|
|
| T |
2586129 |
tcacatttgacataccagct |
2586110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 2448611 - 2448397
Alignment:
| Q |
1 |
tgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaaaactttc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
2448611 |
tgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaattcaacttcccccaagactttc |
2448512 |
T |
|
| Q |
101 |
tctataatttcaccttccatattttcagaatcaatctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtact |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2448511 |
tctagaatttcaccttccatattttcagaatctatttttggaactctttttatcatttccattattctttctcctgcaacacttgcttctgagaagtact |
2448412 |
T |
|
| Q |
201 |
tcacatttgataaac |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2448411 |
tcacatttgataaac |
2448397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2677565 - 2677784
Alignment:
| Q |
1 |
tgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaaaactttc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
2677565 |
tgatggaacctttaaacaaaaatcatttaggaccacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccctaagactttc |
2677664 |
T |
|
| Q |
101 |
tctataatttcaccttccatattttcagaatcaatctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtact |
200 |
Q |
| |
|
|||| |||||||||||| || ||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2677665 |
tctagaatttcaccttcgatgttttcagaatctatctttggaactctttttatcatttccattattctttctcctgcaacacttgcttctgagaagtact |
2677764 |
T |
|
| Q |
201 |
tcacatttgataaaccagct |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2677765 |
tcacatttgataaaccagct |
2677784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 2432744 - 2432530
Alignment:
| Q |
1 |
tgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaaaactttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
2432744 |
tgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacattgttgaactcaacttcccccaagactttc |
2432645 |
T |
|
| Q |
101 |
tctataatttcaccttccatattttcagaatcaatctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtact |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||| | |||||||| ||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
2432644 |
tctataatttcaccttccatgttttcagaatctatcgttggaactctttttatcacttccattattctttctcctgccacacttgcttctgcgaagtacc |
2432545 |
T |
|
| Q |
201 |
tcacatttgataaac |
215 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
2432544 |
tcacatttgagaaac |
2432530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2645127 - 2645346
Alignment:
| Q |
1 |
tgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaaaactttc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||| |
|
|
| T |
2645127 |
tgatggaaccttcaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttaaattcaacttctcctaaaactttc |
2645226 |
T |
|
| Q |
101 |
tctataatttcaccttccatattttcagaatcaatctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtact |
200 |
Q |
| |
|
|||| ||| || |||||||| |||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
2645227 |
tctagaatctctccttccatgttttcagaatcaatctttggaactctatttatcacatccattattctttctcctgctacacttgcttctgaaaagtact |
2645326 |
T |
|
| Q |
201 |
tcacatttgataaaccagct |
220 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
2645327 |
tcacatttgataaaacagct |
2645346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2620019 - 2619800
Alignment:
| Q |
1 |
tgatggaacctttaagcaaaaatcatttaagatcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaaaactttc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||| |
|
|
| T |
2620019 |
tgatggaacctttaaacaaaaatcatttaggaccacactttctggtcttgatggatacacaaattcaacatggttgaattcaactttccctgacactttc |
2619920 |
T |
|
| Q |
101 |
tctataatttcaccttccatattttcagaatcaatctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtact |
200 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||| || ||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
2619919 |
tctagaatttcaccttccatgtttttagaatctatttttggaactctatttatcatttccattattctttctcctgcaacacttgcctctgagaagtact |
2619820 |
T |
|
| Q |
201 |
tcacatttgataaaccagct |
220 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
2619819 |
tcacatttgatagaccagct |
2619800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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