View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_38 (Length: 216)
Name: NF19965_low_38
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 43359799 - 43359602
Alignment:
| Q |
1 |
acatgtttgtgggtggaacggacacaaccgcaacaacattagaatgggcagtttcagagctcatgaaacattttaccataatgaagaaagcacaagaaga |
100 |
Q |
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| T |
43359799 |
acatgtttgtgggtggaacggacacaaccgcaacaacattagaatgggcagtttcagagctcatgaaacatcctaccataatgaagaaagcacaagaaga |
43359700 |
T |
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| Q |
101 |
agtaagaagagttgtaggcaataaatcaaaagtagaagaaaatgacatcaatcaaatgcattatttaaagtgtgtagtgaaagaaactatgagattac |
198 |
Q |
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| T |
43359699 |
agtaagaagagttgtaggcaataaatcaaaagtagaagaaaatgacatcaatcaaatgcattatttaaagtgtgtagtgaaagaaactatgagattac |
43359602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 43342087 - 43341904
Alignment:
| Q |
3 |
atgtttgtgggtggaacggacacaaccgcaacaacattagaatgggcagtttcagagctcatgaaacattttaccataatgaagaaagcacaagaagaag |
102 |
Q |
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| T |
43342087 |
atgtttgttggaggaactgacacagcctcagcaacattagaatgggggatgtcagagcttatgagacatccaaccataatgaagaaagcgcaagaagaag |
43341988 |
T |
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| Q |
103 |
taagaagagttgtaggcaataaatcaaaagtagaagaaaatgacatcaatcaaatgcattatttaaagtgtgtagtgaaagaaa |
186 |
Q |
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| T |
43341987 |
taagaagagttgtaggcaataagtcaaaagttgaaaaagatgacatcaaccaaatgcattatttaaagtgtgtagtgaaagaaa |
43341904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 34415117 - 34415222
Alignment:
| Q |
93 |
caagaagaagtaagaagagttgtaggcaataaatcaaaagtagaagaaaatgacatcaatcaaatgcattatttaaagtgtgtagtgaaagaaactatga |
192 |
Q |
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| T |
34415117 |
caagaagaaataagaaaagttgtggggtataaatcaaaagtggatgaaaatgatctgaatcaaatgaactacatgaagtgtgtagtcaaagaatctatga |
34415216 |
T |
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| Q |
193 |
gattac |
198 |
Q |
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|||||| |
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| T |
34415217 |
gattac |
34415222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 34417553 - 34417635
Alignment:
| Q |
76 |
ccataatgaagaaagcacaagaagaagtaagaagagttgtaggcaataaatcaaaagtagaagaaaatgacatcaatcaaatg |
158 |
Q |
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| T |
34417553 |
ccataatgaagaaagcacaggaggaggtaaggagaattgtagggaataaatcaaaaatagaggatagtgatgtcaatcaaatg |
34417635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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