View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19965_low_39 (Length: 215)

Name: NF19965_low_39
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19965_low_39
NF19965_low_39
[»] chr1 (4 HSPs)
chr1 (62-187)||(1184722-1184846)
chr1 (11-58)||(49715347-49715394)
chr1 (11-58)||(49718826-49718873)
chr1 (11-58)||(50197862-50197908)
[»] chr4 (4 HSPs)
chr4 (99-187)||(29976337-29976421)
chr4 (20-58)||(19928028-19928066)
chr4 (20-58)||(49637459-49637497)
chr4 (20-58)||(49640752-49640790)
[»] chr6 (1 HSPs)
chr6 (11-58)||(11409741-11409788)
[»] chr2 (4 HSPs)
chr2 (11-58)||(29434762-29434809)
chr2 (11-58)||(38325378-38325424)
chr2 (11-58)||(38327335-38327381)
chr2 (20-58)||(4576929-4576967)
[»] scaffold0911 (1 HSPs)
scaffold0911 (11-59)||(3689-3736)
[»] chr5 (1 HSPs)
chr5 (11-59)||(34653812-34653859)
[»] chr8 (1 HSPs)
chr8 (11-58)||(14187032-14187079)
[»] chr7 (4 HSPs)
chr7 (11-58)||(16546716-16546762)
chr7 (11-58)||(16618900-16618946)
chr7 (20-58)||(26459610-26459648)
chr7 (22-58)||(23468075-23468111)
[»] chr3 (1 HSPs)
chr3 (11-58)||(4249511-4249557)
[»] scaffold0214 (2 HSPs)
scaffold0214 (20-58)||(12686-12724)
scaffold0214 (20-58)||(26702-26740)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 1184722 - 1184846
Alignment:
Q  62 ttgagtataaaaaatgttggatgggtttgagactttgagtagatttattggtacatgaaattaagaagaaaaaagattattggaatttagtgcgatgaag 161  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1184722 ttgagtataaaa-atgttggatgggtttgagactttgagtagatttattggtacatgaaattaagaagaaaaaagattattggaatttagtgtgatgaag 1184820  T
Q  162 aaactaaatgaagaagatgatgataa 187  Q
    ||||||||| ||||||||||||||||    
T  1184821 aaactaaataaagaagatgatgataa 1184846  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 49715394 - 49715347
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  49715394 aatatcataaaaaagaccataaaaataatgtaatgacgactgtcatca 49715347  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 49718873 - 49718826
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  49718873 aatatcataaaaaagaccataaaaataatgtaatgacgactgtcatca 49718826  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 50197862 - 50197908
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||    
T  50197862 aatatcataaaaaa-accataaaaataacataatgacgactgtcatca 50197908  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 29976337 - 29976421
Alignment:
Q  99 agtagatttattggtacatgaaattaagaagaaaaaagattattggaatttagtgcgatgaagaaactaaatgaagaagatgatgataa 187  Q
    |||||||||||||||||||||||    |||||||||||||| ||||||||||||| |||||||||||||||||| || |||||| ||||    
T  29976337 agtagatttattggtacatgaaa----gaagaaaaaagattcttggaatttagtgtgatgaagaaactaaatgaggatgatgataataa 29976421  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 19928066 - 19928028
Alignment:
Q  20 aaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  19928066 aaaaagaccataaaaataacgtaatgacgactgtcatca 19928028  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 49637459 - 49637497
Alignment:
Q  20 aaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  49637459 aaaaatatcataaaaataacgtaatgacgactgtcatca 49637497  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 49640752 - 49640790
Alignment:
Q  20 aaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  49640752 aaaaatatcataaaaataacgtaatgacgactgtcatca 49640790  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 11409788 - 11409741
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  11409788 aatatcataaaaaagaccataaaaataatgtaatgacgactgtcatca 11409741  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 29434809 - 29434762
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  29434809 aatatcataaaaaagaccataaaaataatgtaatgacgactgtcatca 29434762  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 38325424 - 38325378
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  38325424 aatatcataaaaag-accataaaaataacgtaatgacgactgtcatca 38325378  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 38327335 - 38327381
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  38327335 aatatcataaaaag-accataaaaataacgtaatgacgactgtcatca 38327381  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 4576967 - 4576929
Alignment:
Q  20 aaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  4576967 aaaaataccataaaaataacttaatgacgactgtcatca 4576929  T

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Target: scaffold0911 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 3736 - 3689
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatcag 59  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  3736 aatatcataaaaag-accataaaaataacgtaatgacgactgtcatcag 3689  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 34653812 - 34653859
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatcag 59  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  34653812 aatatcataaaaag-accataaaaataacgtaatgacgactgtcatcag 34653859  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 14187079 - 14187032
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||| ||||||||| |||| |||||||| |||||||||||||||||||    
T  14187079 aataacataaaaaagaccaaaaaaataacgtaatgacgactgtcatca 14187032  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 16546762 - 16546716
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  16546762 aatatcataaaaag-accataaaaataacgtaatgacgactgtcatca 16546716  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 16618900 - 16618946
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  16618900 aatatcataaaaag-accataaaaataacgtaatgacgactgtcatca 16618946  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 26459648 - 26459610
Alignment:
Q  20 aaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  26459648 aaaaatatcataaaaataacgtaatgacgactgtcatca 26459610  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 23468075 - 23468111
Alignment:
Q  22 aaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||| |||||||||||| |||||||||||||||||||    
T  23468075 aaatgccataaaaataacgtaatgacgactgtcatca 23468111  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 4249557 - 4249511
Alignment:
Q  11 aatatcataaaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  4249557 aatatcataaaaag-accataaaaataacgtaatgacgactgtcatca 4249511  T

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Target: scaffold0214 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 12724 - 12686
Alignment:
Q  20 aaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  12724 aaaaatatcataaaaataacgtaatgacgactgtcatca 12686  T

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Target: scaffold0214; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 26740 - 26702
Alignment:
Q  20 aaaaataccataaaaataatgtaatgacgactgtcatca 58  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  26740 aaaaatatcataaaaataacgtaatgacgactgtcatca 26702  T

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