View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19965_low_5 (Length: 537)

Name: NF19965_low_5
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19965_low_5
NF19965_low_5
[»] chr8 (30 HSPs)
chr8 (20-522)||(11136713-11137209)
chr8 (106-299)||(42435311-42435503)
chr8 (106-299)||(2999840-3000033)
chr8 (106-295)||(44353451-44353636)
chr8 (88-282)||(3846155-3846348)
chr8 (296-427)||(41266924-41267057)
chr8 (88-168)||(3817784-3817864)
chr8 (134-202)||(9633952-9634020)
chr8 (106-226)||(11383642-11383761)
chr8 (378-429)||(7597653-7597704)
chr8 (345-429)||(1292541-1292626)
chr8 (384-429)||(12702712-12702757)
chr8 (384-429)||(15212831-15212876)
chr8 (345-429)||(18655405-18655490)
chr8 (153-234)||(22976236-22976317)
chr8 (384-429)||(42498239-42498284)
chr8 (315-429)||(3231874-3231990)
chr8 (383-429)||(4162541-4162587)
chr8 (387-429)||(4283572-4283614)
chr8 (293-429)||(8965769-8965907)
chr8 (387-429)||(27811326-27811368)
chr8 (293-429)||(29796400-29796538)
chr8 (387-429)||(30143388-30143430)
chr8 (354-428)||(31218272-31218346)
chr8 (314-427)||(32902254-32902368)
chr8 (387-429)||(42435069-42435111)
chr8 (384-429)||(33352195-33352240)
chr8 (384-429)||(44353838-44353883)
chr8 (384-428)||(1746297-1746341)
chr8 (298-429)||(19491777-19491909)
[»] chr5 (33 HSPs)
chr5 (153-429)||(10054895-10055172)
chr5 (106-299)||(40146917-40147109)
chr5 (106-298)||(38746661-38746852)
chr5 (106-281)||(316421-316596)
chr5 (341-429)||(316764-316852)
chr5 (106-299)||(5057704-5057895)
chr5 (106-291)||(28277971-28278156)
chr5 (107-299)||(213125-213317)
chr5 (293-429)||(3325866-3326003)
chr5 (308-429)||(16452047-16452170)
chr5 (106-289)||(16642208-16642389)
chr5 (314-429)||(35616143-35616259)
chr5 (88-299)||(21205972-21206183)
chr5 (153-299)||(27015234-27015380)
chr5 (153-264)||(35615874-35615985)
chr5 (296-429)||(42310013-42310148)
chr5 (387-429)||(9049420-9049462)
chr5 (384-429)||(13239796-13239841)
chr5 (384-429)||(13488248-13488293)
chr5 (106-219)||(14689807-14689920)
chr5 (384-429)||(30683002-30683047)
chr5 (384-429)||(39468627-39468672)
chr5 (384-429)||(42428508-42428553)
chr5 (83-178)||(30792872-30792968)
chr5 (387-427)||(32576377-32576417)
chr5 (318-429)||(25412739-25412850)
chr5 (387-429)||(538073-538115)
chr5 (387-429)||(13695769-13695811)
chr5 (387-429)||(28278364-28278406)
chr5 (353-398)||(4160645-4160690)
chr5 (354-427)||(10700729-10700801)
chr5 (243-292)||(30802733-30802782)
chr5 (387-428)||(38747053-38747094)
[»] chr4 (57 HSPs)
chr4 (36-295)||(34112199-34112456)
chr4 (107-405)||(38811291-38811590)
chr4 (106-299)||(40630640-40630832)
chr4 (106-299)||(8665063-8665255)
chr4 (106-299)||(50263018-50263210)
chr4 (106-299)||(54882676-54882868)
chr4 (106-299)||(12073049-12073240)
chr4 (106-299)||(26363921-26364113)
chr4 (153-299)||(33089601-33089747)
chr4 (109-297)||(6655615-6655802)
chr4 (317-429)||(32091455-32091568)
chr4 (106-299)||(33989518-33989710)
chr4 (153-292)||(35662144-35662283)
chr4 (94-281)||(41961050-41961237)
chr4 (68-182)||(22629325-22629439)
chr4 (106-231)||(8653256-8653380)
chr4 (153-230)||(10071973-10072050)
chr4 (106-231)||(41964072-41964197)
chr4 (384-429)||(56178715-56178760)
chr4 (106-293)||(27417277-27417463)
chr4 (361-425)||(33089900-33089964)
chr4 (341-429)||(44570444-44570531)
chr4 (153-299)||(55085685-55085832)
chr4 (108-282)||(47514838-47515012)
chr4 (153-294)||(2209410-2209551)
chr4 (387-429)||(4588007-4588049)
chr4 (384-426)||(48143088-48143130)
chr4 (106-228)||(50674237-50674358)
chr4 (388-429)||(8648188-8648229)
chr4 (384-429)||(9927536-9927581)
chr4 (384-429)||(12119584-12119629)
chr4 (384-429)||(37740670-37740715)
chr4 (384-429)||(54199984-54200029)
chr4 (110-258)||(3785750-3785898)
chr4 (293-429)||(6677421-6677559)
chr4 (353-429)||(34788853-34788929)
chr4 (359-429)||(6655976-6656046)
chr4 (359-429)||(8665428-8665498)
chr4 (388-426)||(22882832-22882870)
chr4 (388-426)||(22934496-22934534)
chr4 (387-429)||(26699521-26699563)
chr4 (387-429)||(27417043-27417085)
chr4 (387-429)||(36463467-36463509)
chr4 (387-429)||(40632493-40632535)
chr4 (316-429)||(41961393-41961507)
chr4 (293-429)||(44967908-44968045)
chr4 (387-429)||(50262779-50262821)
chr4 (387-429)||(54883068-54883110)
chr4 (345-429)||(379385-379470)
chr4 (314-429)||(21703914-21704031)
chr4 (384-429)||(26364281-26364326)
chr4 (388-429)||(33989893-33989934)
chr4 (360-429)||(34112838-34112907)
chr4 (384-429)||(34570492-34570537)
chr4 (193-281)||(25723554-25723642)
chr4 (359-411)||(33706593-33706644)
chr4 (318-429)||(36994502-36994614)
[»] chr2 (23 HSPs)
chr2 (44-219)||(40935579-40935752)
chr2 (134-299)||(24397740-24397906)
chr2 (314-429)||(42261564-42261683)
chr2 (37-229)||(42261999-42262190)
chr2 (317-429)||(30218123-30218236)
chr2 (106-299)||(45726586-45726777)
chr2 (106-299)||(1632052-1632244)
chr2 (294-459)||(42019921-42020087)
chr2 (153-299)||(42288430-42288575)
chr2 (106-299)||(33647824-33648018)
chr2 (106-299)||(7450957-7451148)
chr2 (318-429)||(5723334-5723445)
chr2 (354-429)||(6595084-6595159)
chr2 (108-231)||(17450249-17450371)
chr2 (387-429)||(24398105-24398147)
chr2 (354-421)||(3897005-3897072)
chr2 (387-429)||(11049601-11049644)
chr2 (387-429)||(7815351-7815393)
chr2 (387-429)||(45726977-45727019)
chr2 (384-429)||(2334496-2334541)
chr2 (388-429)||(4561137-4561178)
chr2 (384-429)||(38312285-38312330)
chr2 (351-427)||(4484411-4484487)
[»] chr1 (44 HSPs)
chr1 (106-299)||(11348354-11348546)
chr1 (106-299)||(28242044-28242236)
chr1 (317-429)||(9109498-9109611)
chr1 (106-299)||(7482550-7482743)
chr1 (124-298)||(42298296-42298469)
chr1 (153-299)||(37033393-37033539)
chr1 (153-299)||(37167999-37168145)
chr1 (69-292)||(29135866-29136088)
chr1 (34-299)||(6808031-6808295)
chr1 (153-299)||(13547409-13547555)
chr1 (153-299)||(13549320-13549466)
chr1 (354-428)||(2926523-2926597)
chr1 (106-231)||(47255722-47255846)
chr1 (318-429)||(3156843-3156955)
chr1 (318-429)||(4552715-4552827)
chr1 (341-429)||(22079318-22079406)
chr1 (318-429)||(49918328-49918440)
chr1 (153-299)||(37879231-37879377)
chr1 (387-429)||(19752734-19752776)
chr1 (106-299)||(19754147-19754339)
chr1 (387-429)||(19754543-19754585)
chr1 (106-299)||(34602659-34602851)
chr1 (106-299)||(34603232-34603424)
chr1 (134-187)||(6068301-6068354)
chr1 (314-426)||(12318604-12318717)
chr1 (384-429)||(28220304-28220349)
chr1 (384-429)||(28223499-28223544)
chr1 (318-429)||(25652064-25652176)
chr1 (358-429)||(4535559-4535630)
chr1 (153-292)||(19752388-19752526)
chr1 (354-429)||(41135835-41135910)
chr1 (387-429)||(928054-928096)
chr1 (106-264)||(9109756-9109914)
chr1 (387-429)||(28265632-28265674)
chr1 (387-429)||(31659286-31659328)
chr1 (387-429)||(31925785-31925827)
chr1 (387-429)||(47255418-47255460)
chr1 (341-429)||(16914253-16914342)
chr1 (384-429)||(23555343-23555388)
chr1 (314-429)||(1050522-1050638)
chr1 (387-427)||(11348746-11348786)
chr1 (384-428)||(13316431-13316475)
chr1 (222-282)||(38747053-38747113)
chr1 (298-429)||(41360872-41361004)
[»] scaffold0466 (2 HSPs)
scaffold0466 (106-299)||(6984-7176)
scaffold0466 (387-429)||(7375-7417)
[»] chr7 (42 HSPs)
chr7 (106-299)||(34311036-34311229)
chr7 (106-299)||(4512710-4512901)
chr7 (106-267)||(5116290-5116451)
chr7 (307-429)||(1360229-1360354)
chr7 (106-299)||(2389938-2390130)
chr7 (106-299)||(6431627-6431819)
chr7 (88-299)||(22328718-22328931)
chr7 (293-421)||(26639273-26639402)
chr7 (106-255)||(32358199-32358348)
chr7 (106-230)||(29608397-29608520)
chr7 (106-299)||(2361291-2361483)
chr7 (106-293)||(3258651-3258838)
chr7 (318-429)||(47674021-47674133)
chr7 (106-293)||(22269630-22269815)
chr7 (159-234)||(22552822-22552897)
chr7 (387-429)||(1113705-1113747)
chr7 (296-428)||(48491534-48491668)
chr7 (106-230)||(6360301-6360424)
chr7 (384-429)||(27347862-27347907)
chr7 (207-299)||(4509026-4509117)
chr7 (207-299)||(4510868-4510959)
chr7 (318-429)||(31733047-31733159)
chr7 (353-425)||(43363556-43363628)
chr7 (106-186)||(48599757-48599836)
chr7 (354-429)||(23555055-23555130)
chr7 (385-428)||(48489477-48489520)
chr7 (387-429)||(2390330-2390372)
chr7 (387-429)||(6360030-6360072)
chr7 (387-429)||(6432019-6432061)
chr7 (387-429)||(22270021-22270063)
chr7 (387-429)||(30024810-30024852)
chr7 (387-429)||(32358132-32358174)
chr7 (293-369)||(3904756-3904833)
chr7 (109-186)||(4509130-4509206)
chr7 (109-186)||(4510972-4511048)
chr7 (384-429)||(18126689-18126734)
chr7 (387-428)||(22328470-22328511)
chr7 (384-429)||(35853959-35854004)
chr7 (388-429)||(36574594-36574635)
chr7 (384-429)||(43864289-43864334)
chr7 (388-429)||(47676214-47676255)
chr7 (106-186)||(30814421-30814500)
[»] chr3 (45 HSPs)
chr3 (108-297)||(1683146-1683334)
chr3 (106-298)||(43404054-43404245)
chr3 (106-293)||(28074273-28074458)
chr3 (106-299)||(40912994-40913187)
chr3 (106-304)||(43402105-43402302)
chr3 (88-299)||(46860108-46860319)
chr3 (106-299)||(49199791-49199983)
chr3 (106-299)||(54593360-54593553)
chr3 (153-299)||(6095919-6096065)
chr3 (153-299)||(30235827-30235973)
chr3 (106-299)||(34490869-34491061)
chr3 (36-299)||(4569538-4569799)
chr3 (153-299)||(41819842-41819987)
chr3 (387-429)||(2020187-2020229)
chr3 (336-429)||(8166535-8166628)
chr3 (153-292)||(47303954-47304093)
chr3 (318-429)||(45095142-45095253)
chr3 (88-186)||(36796044-36796142)
chr3 (293-428)||(1313884-1314021)
chr3 (384-429)||(5236534-5236579)
chr3 (384-429)||(7762310-7762355)
chr3 (359-428)||(20937676-20937745)
chr3 (345-426)||(26323155-26323236)
chr3 (384-429)||(29810913-29810958)
chr3 (345-429)||(46860479-46860564)
chr3 (341-421)||(3148077-3148157)
chr3 (359-427)||(24635277-24635345)
chr3 (318-429)||(35138784-35138896)
chr3 (83-149)||(25491229-25491295)
chr3 (34-142)||(5434355-5434462)
chr3 (387-429)||(30236173-30236215)
chr3 (387-429)||(46173405-46173447)
chr3 (314-406)||(1683450-1683543)
chr3 (384-429)||(7764509-7764554)
chr3 (384-429)||(19683967-19684012)
chr3 (384-429)||(29813108-29813153)
chr3 (34-71)||(34795454-34795491)
chr3 (384-429)||(37408503-37408548)
chr3 (388-429)||(44700556-44700597)
chr3 (384-429)||(51398859-51398904)
chr3 (384-428)||(5258223-5258267)
chr3 (384-428)||(5260402-5260446)
chr3 (361-429)||(25491046-25491114)
chr3 (106-178)||(26323953-26324025)
chr3 (318-429)||(40735361-40735473)
[»] chr6 (18 HSPs)
chr6 (83-304)||(2973254-2973476)
chr6 (70-299)||(3809028-3809258)
chr6 (106-299)||(5043284-5043475)
chr6 (106-297)||(21593322-21593512)
chr6 (34-186)||(25072770-25072921)
chr6 (318-429)||(5406278-5406389)
chr6 (318-429)||(5410603-5410714)
chr6 (318-429)||(4045401-4045513)
chr6 (318-429)||(9183109-9183221)
chr6 (353-429)||(31404753-31404829)
chr6 (318-429)||(5413472-5413583)
chr6 (387-429)||(603166-603208)
chr6 (359-429)||(2973017-2973087)
chr6 (387-429)||(17758071-17758113)
chr6 (387-429)||(21588979-21589021)
chr6 (387-429)||(21593712-21593754)
chr6 (345-429)||(5043632-5043717)
chr6 (384-428)||(30834615-30834659)
[»] scaffold0002 (3 HSPs)
scaffold0002 (314-429)||(490399-490518)
scaffold0002 (37-229)||(490834-491025)
scaffold0002 (384-429)||(434578-434623)
[»] scaffold0219 (1 HSPs)
scaffold0219 (293-429)||(27521-27659)
[»] scaffold0014 (1 HSPs)
scaffold0014 (106-299)||(80603-80795)
[»] scaffold0286 (1 HSPs)
scaffold0286 (109-297)||(11217-11404)
[»] scaffold0176 (1 HSPs)
scaffold0176 (153-299)||(18321-18467)
[»] scaffold0066 (1 HSPs)
scaffold0066 (384-429)||(20493-20538)
[»] scaffold0053 (1 HSPs)
scaffold0053 (388-429)||(25102-25143)
[»] scaffold1519 (1 HSPs)
scaffold1519 (384-428)||(961-1005)


Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Original strand, 11136713 - 11137209
Alignment:
Q  20 tatacgagagtttcatcgtgacacgattttgcttgaatttgaacactatatataagcatcatctgacacatttgttaagagagcttgtgaatctcatgga 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  11136713 tatacgagagtttcatcgtgacacgattttg-ttgaatttgaacactata--taagcatcatctgacacatttgttgagagagcttgtgaatctcatgga 11136809  T
Q  120 aactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaaga 219  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11136810 aactaaaggatgagatttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaaga 11136909  T
Q  220 gagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgtaaacatttttggtaagtgaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||       
T  11136910 gagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgagtggagagtcatttgtaaacatttttggtaagt--- 11137006  T
Q  320 atcattgagtctatttttcatggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgt 419  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11137007 -tcattgagtctatttttcatggaagagattgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgt 11137105  T
Q  420 atctctttgt-nnnnnnnnctcattgatagtgaattggagatattcctcctcatagtaggtcattgttggatcgaactaaggtaaagaattctttgatgt 518  Q
    ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11137106 atctctttgtaaaaaaaaactcattgatagtgaattggagatattcctcctcatagtaggtcattgttggaccgaactaaggtaaagaattctttgatgt 11137205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 42435503 - 42435311
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| || ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  42435503 gtgaatctcatggaaaccaaaggaggaaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 42435405  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||| |||||  ||| | || |||||||||| || ||||| |||| || ||||| |||  ||||||||| |||||    
T  42435404 ggagaaccaaaagagggggctcttgggaaaaaggttggtgacttttgggga-agattcatggggttgggaaacatatgaatggagagtcttttgt 42435311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 3000033 - 2999840
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    ||||||||||| ||||| |||||| |||| ||||||||||| ||| | ||||||||||| ||||||||||||||  ||||||   || | || ||||| |    
T  3000033 gtgaatctcatagaaaccaaagga-gagaacttttagggaatttagatactaaaggttgagggtctttgggtgatgttcaaagcttcaagatgtgaatct 2999935  T
Q  205 tggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||||||| ||||||| ||| |||||| |  |||| | || |||||||||| || ||||| |||  |  ||||||||| || |||||||| ||||    
T  2999934 tggagaaccaaaagagggggttcttgggatatggttggtgtcttttggggaaagattcatggggatgagaaacacatgagtagagagtcaattgt 2999840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 295
Target Start/End: Original strand, 44353451 - 44353636
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| || |||   || | |   |||| ||    
T  44353451 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggtttaaaacttcaaga---gaatctt 44353546  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcat 295  Q
    ||||||||||||||| ||||||||| |||   ||| | |||||||||| || || ||||| |||| |||||||||||| ||||||||||||    
T  44353547 ggagaactaaaagagggggctcttgtgaagagggttggtgccttttggaga-agattcatggggttggaaaacacatgagtggagagtcat 44353636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 88 - 282
Target Start/End: Complemental strand, 3846348 - 3846155
Alignment:
Q  88 catttgttaagagagcttgtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaat 187  Q
    |||||||| |||| ||||| |||| | |||||||| ||||||  | ||||| |||| ||||  ||||||||||||| ||||  ||| ||||||||||||     
T  3846348 catttgttgagagggcttgagaattttatggaaaccaaaggagaaaactttcagggtactttgaaactaaaggttgagggttcttgagtgagattcaaag 3846249  T
Q  188 tgtccaaatatgaattttggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatg 282  Q
      ||  ||| ||||| ||| ||||| |||||| || |||||||||||   || | || ||||||||||||| ||||| |||| || |||||||||    
T  3846248 gttcataatgtgaatcttgaagaaccaaaaga-agagctcttggaaaagagttggtgtcttttggggagagattcatggggttgggaaacacatg 3846155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 427
Target Start/End: Original strand, 41266924 - 41267057
Alignment:
Q  296 ttgtaaacatttttggtaagtgaaatcattgagtctatttttcat-ggaagagactgagaaaatggtagaaattaag-tatgtccttgaagaacttgttg 393  Q
    ||||||| | ||| ||| |||||||||||||||||| || ||| | |||||||  |||||||||||||||||||| | | ||| |||  |||||||||||    
T  41266924 ttgtaaatactttgggtgagtgaaatcattgagtctcttgttcttaggaagagtttgagaaaatggtagaaattaggttttgttcttagagaacttgttg 41267023  T
Q  394 aagctaatttcttataaccgttttgtatctcttt 427  Q
    |  |||||||||| ||||  |||||||| |||||    
T  41267024 agactaatttcttgtaactcttttgtatttcttt 41267057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 3817864 - 3817784
Alignment:
Q  88 catttgttaagagagcttgtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggt 168  Q
    |||||||| |||| ||||| ||| ||||||||||| ||||||  | |||||||||| ||||| ||||||||||||| ||||    
T  3817864 catttgttgagagcgcttgagaaactcatggaaaccaaaggagaaaacttttagggtacttagaaactaaaggttgagggt 3817784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 9634020 - 9633952
Alignment:
Q  134 acttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaat 202  Q
    |||||||| ||||||| ||||||||||| |   |||||||||||||||||||| ||||||||| |||||    
T  9634020 acttttagagaacttagaaactaaaggtcgaacgtctttgggtgagattcaaagtgtccaaatgtgaat 9633952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 11383642 - 11383761
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  11383642 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 11383740  T
Q  206 ggagaactaaaagagagggct 226  Q
    ||||||| ||||||| |||||    
T  11383741 ggagaaccaaaagagggggct 11383761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 7597653 - 7597704
Alignment:
Q  378 cttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||| ||| |||||||||||||||||||||||| | ||||||||||||||||    
T  7597653 cttggagagcttgttgaagctaatttcttataatccttttgtatctctttgt 7597704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 429
Target Start/End: Complemental strand, 1292626 - 1292541
Alignment:
Q  345 gagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||| ||||||||||| |||||||||||| ||| |||   || |||||||||||||||||||| ||||   |||||||||||||||    
T  1292626 gagattgagaaaatgggtagaaattaagtttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgt 1292541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 12702757 - 12702712
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  12702757 gaacttgttgaagctaatttcttgtaacccttttgtgtctctttgt 12702712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 15212831 - 15212876
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  15212831 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 15212876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 18655405 - 18655490
Alignment:
Q  345 gagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||| ||||||||||| |||||||||||  ||| |||   || |||||||||||||||||||| |||||  |||||||||||||||    
T  18655405 gagattgagaaaatgggtagaaattaaggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgt 18655490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 22976236 - 22976317
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttggaaa 234  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||||||| |||||||  ||||||||||||    
T  22976236 actaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggaggctcttggaaa 22976317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 42498239 - 42498284
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||    
T  42498239 gaacttgttgaagctaatttcttgtaacccttttgtatttctttgt 42498284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 429
Target Start/End: Complemental strand, 3231990 - 3231874
Alignment:
Q  315 gtgaaatcattgagtctatttttcat-ggaagagactgagaaaatggtagaaattaag-tatgtccttgaagaacttgttgaagctaatttcttataacc 412  Q
    ||||| ||||||||||| || ||| | |||||||| ||||||||  |||||||||| | | ||| |||   || ||||||||||||||||| || |||||    
T  3231990 gtgaattcattgagtctcttgttcttaggaagagattgagaaaaatgtagaaattaggctttgttcttcgtgagcttgttgaagctaattttttttaacc 3231891  T
Q  413 gttttgtatctctttgt 429  Q
     ||||||||||||||||    
T  3231890 attttgtatctctttgt 3231874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 4162541 - 4162587
Alignment:
Q  383 agaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||||||| ||||   |||||||||||||||    
T  4162541 agaacttgttgaagctaatttcttgtaactcatttgtatctctttgt 4162587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 4283572 - 4283614
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  4283572 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 4283614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 429
Target Start/End: Complemental strand, 8965907 - 8965769
Alignment:
Q  293 catttgtaaacatttttggtaagtgaaa-tcattgagtctatttttcatggaagagactgagaaaatggtagaaattaag-tatgtccttgaagaacttg 390  Q
    ||||||||||||  || ||| ||||||| ||||||||| | || ||||| |  |||| || ||||| ||||||||||| | | ||| ||| | ||  |||    
T  8965907 catttgtaaacaccttgggtgagtgaaaatcattgagtgtcttgttcattggtgagattgggaaaaaggtagaaattagggtttgttctttatgagtttg 8965808  T
Q  391 ttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||| ||||||||||||||| |||| |||||||||||    
T  8965807 ttgaagttaatttcttataacccttttatatctctttgt 8965769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 27811326 - 27811368
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  27811326 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 27811368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 429
Target Start/End: Complemental strand, 29796538 - 29796400
Alignment:
Q  293 catttgtaaacatttttggtaagtgaaatcattgagtctatttttcatg-gaagagactgagaaaatggtagaaattaag-tatgtccttgaagaacttg 390  Q
    |||||||||| || || ||  |||||| ||||||||||| || ||| || ||||||| || |||||  |||||||| ||| | ||| |||| ||||||||    
T  29796538 catttgtaaatatcttgggcgagtgaattcattgagtctcttgttcttgagaagagattgggaaaagagtagaaatcaaggtttgttcttggagaacttg 29796439  T
Q  391 ttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||| ||||||| ||||  ||||||| || |||||    
T  29796438 ttgaagctgatttcttgtaacatttttgtacctatttgt 29796400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 30143388 - 30143430
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  30143388 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 30143430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 428
Target Start/End: Original strand, 31218272 - 31218346
Alignment:
Q  354 aaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    |||||||||||||||| |  ||| |||   ||||||||  ||||||||||||| ||||| |||||||||||||||    
T  31218272 aaaatggtagaaattagggttgttctttgtgaacttgtcaaagctaatttcttgtaacccttttgtatctctttg 31218346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 427
Target Start/End: Complemental strand, 32902368 - 32902254
Alignment:
Q  314 agtgaaatcattgagtctatttttcatg-gaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataacc 412  Q
    |||||||||||||||||| ||  ||||| || |||| ||| |||  ||||||||||| || ||| | || |||   |||||||||||||||||| ||||     
T  32902368 agtgaaatcattgagtctcttgatcatgagaggagattgataaatgggtagaaattatgtttgttcatggagactctgttgaagctaatttcttgtaact 32902269  T
Q  413 gttttgtatctcttt 427  Q
     ||||||||||||||    
T  32902268 tttttgtatctcttt 32902254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 42435111 - 42435069
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  42435111 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 42435069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 33352195 - 33352240
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||| |||||||||| |||||  |||||||||||||||    
T  33352195 gaacttgttgaacctaatttcttgtaacccatttgtatctctttgt 33352240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 44353838 - 44353883
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| ||||   |||||||||||||||    
T  44353838 gaacttgttgaagctaatttcttgtaacacatttgtatctctttgt 44353883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 1746341 - 1746297
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||    
T  1746341 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttg 1746297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 429
Target Start/End: Complemental strand, 19491909 - 19491777
Alignment:
Q  298 gtaaacatttttggtaagtgaaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaag 396  Q
    |||||||| || ||| |||||||  ||||||| | || ||||| |  |||| || |||||||| ||||||||| || ||| |||   || |||||||||     
T  19491909 gtaaacatcttgggtgagtgaaaatattgagtgtcttgttcattggtgagattgggaaaatgggtagaaattaggtttgttctttgtgagcttgttgaaa 19491810  T
Q  397 ctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||| |||||  |||||||||||||||    
T  19491809 ctaatttcttgtaacccatttgtatctctttgt 19491777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 153 - 429
Target Start/End: Complemental strand, 10055172 - 10054895
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttggaaattggtcgatgccttttgg 252  Q
    ||||||| |||  ||| |||||||||||||||||   || | || ||||| ||||||||| |||||||||||||||||| ||  | | | |||||| |||    
T  10055172 actaaagattgaaggtttttgggtgagattcaaagcttcaagatgtgaatcttggagaaccaaaagagagggctcttgggaaaggtttggtgccttatgg 10055073  T
Q  253 ggagaggttcattgggtaggaaaacacatgggtggagagtcatttgtaaa-catttttggtaagtgaaatcattgagtctatttttcatggaa-gagact 350  Q
    |||||| ||||  |||| || ||||||||| || |||||||| ||| ||| |||||| |||  |||||||||||||||||||| ||||| ||| |||| |    
T  10055072 ggagagattcacggggttgggaaacacatgagtagagagtcaattggaaaacattttgggtgggtgaaatcattgagtctattgttcatagaaagagatt 10054973  T
Q  351 gagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||  ||||||||||| || ||| ||||||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  10054972 gagaaatgggtagaaattatgtttgttcttgaagagtttgttgaagctaatttcttataacc-ttttgtatctctttgt 10054895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 40146917 - 40147109
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| ||||||||| ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  40146917 gtgaatctcatggaaaccaaaggatgaaacttttaggg-ttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 40147015  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||| ||||| |||| | ||||||||||||| || ||||| |||| || ||||||||| |||||||||| |||||    
T  40147016 ggagaaccaaaagagggggctcttgggaaaatggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagtcttttgt 40147109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 106 - 298
Target Start/End: Original strand, 38746661 - 38746852
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    ||||||||||||||||| |||||| |||| |||||||||   ||| | ||||||||||| ||||||||||||||| |||||| | || | || ||||| |    
T  38746661 gtgaatctcatggaaaccaaagga-gagaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatct 38746758  T
Q  205 tggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttg 298  Q
    |||||||| ||||||| ||||||||  ||||  ||| | ||||||||||||| || ||||| |||| || |||||| || |||||||||||||||    
T  38746759 tggagaaccaaaagagggggctcttaagaaaagggttggtgccttttgggga-agattcatggggttgggaaacacgtgagtggagagtcatttg 38746852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 106 - 281
Target Start/End: Original strand, 316421 - 316596
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    |||||||||||||||||||||||| |||| ||||||  | ||||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| |    
T  316421 gtgaatctcatggaaactaaagga-gagaacttttattgtacttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatct 316519  T
Q  205 tggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacat 281  Q
    |||||||| ||||| | |||||||||| |   ||| | |||||||||||||||| |||||  ||| || ||||||||    
T  316520 tggagaaccaaaagggggggctcttgggagagggttggtgccttttggggagagattcataaggttgggaaacacat 316596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 429
Target Start/End: Original strand, 316764 - 316852
Alignment:
Q  341 ggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||| ||| |||||||| ||||||||||| || ||| |||| ||| |||||||||||||||||||| ||| | ||||||||||||||||    
T  316764 ggaaaagattgagaaaaaggtagaaattaggtttgttcttggagagcttgttgaagctaatttcttgtaatccttttgtatctctttgt 316852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 5057704 - 5057895
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    ||||||||||||||||| |||||| |||| |||||||||   ||| | ||||||||||| |||||||||||||||  |||||   || | || ||||| |    
T  5057704 gtgaatctcatggaaaccaaagga-gagaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggatcaaagcttcaagatgtgaatct 5057801  T
Q  205 tggagaactaaaagagagggctcttgg-aaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    | |||||| ||||||| ||||| |||| |||  ||| | ||||||||||||| || ||||| |||| |||||||||||| ||||||||||||||||    
T  5057802 ttgagaaccaaaagag-gggcttttgggaaaaaggttggtgccttttgggga-agattcatggggttggaaaacacatgagtggagagtcatttgt 5057895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 291
Target Start/End: Original strand, 28277971 - 28278156
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    |||||||||| ||||||||||||| || ||||||||||   ||| | ||||||||||| |||||||||| |||| ||||||   || | || ||||| ||    
T  28277971 gtgaatctcaaggaaactaaaggaggaaacttttaggg-ttttagatactaaaggttgagggtctttggatgaggttcaaagcttcaagatgtgaatctt 28278069  T
Q  206 ggagaactaaaaga-gagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagag 291  Q
    ||||||| |||||| | |||||||| |||||  ||| | ||||||||||||| || ||||| |||| || ||||||||| ||||||||    
T  28278070 ggagaaccaaaagaggggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagag 28278156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 299
Target Start/End: Original strand, 213125 - 213317
Alignment:
Q  107 tgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaat-ttt 205  Q
    |||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||     
T  213125 tgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttg 213223  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||| |||||  ||| | |||||||||| || || ||||| |||| || ||||||||| |||||||||| |||||    
T  213224 ggagaaccaaaagagggggctcttgggaaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggagagtcttttgt 213317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 429
Target Start/End: Original strand, 3325866 - 3326003
Alignment:
Q  293 catttgtaaacatttttggtaagtgaaatcattgagtctatttttcat-ggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgt 391  Q
    ||||||||||||  || ||| ||||||| ||||| || | || ||| | |||||| | ||| |||| |||||||||||  | ||| |||||||| |||||    
T  3325866 catttgtaaacaccttgggtgagtgaaaccattgggtatcttgttcttaggaagaaattgaaaaaaaggtagaaattagttttgttcttgaagagcttgt 3325965  T
Q  392 tgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||| ||||| || |||||||||||||    
T  3325966 tgaagctaatttcttgtaaccattgtgtatctctttgt 3326003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 429
Target Start/End: Original strand, 16452047 - 16452170
Alignment:
Q  308 ttggtaagtga-aatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttct 405  Q
    ||||||||||| ||||||||||| | || ||||| || |||| ||  ||||||| |||||||||||| ||| |||   || |||||||||||||||||||    
T  16452047 ttggtaagtgacaatcattgagtgtcttgttcattgatgagattggaaaaatgggtagaaattaagtttgttctttctgagcttgttgaagctaatttct 16452146  T
Q  406 tataaccgttttgtatctctttgt 429  Q
    | |||||  |||||||||||||||    
T  16452147 tgtaacccatttgtatctctttgt 16452170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 289
Target Start/End: Complemental strand, 16642389 - 16642208
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgag-acttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    ||||||||||||||||| |||||| ||| |||||||||| | ||| | |||||||||||  |||||||||||||| ||||||   || | |  ||||| |    
T  16642389 gtgaatctcatggaaaccaaagga-gagcacttttagggtatttagatactaaaggttgatggtctttgggtgaggttcaaagcttcaagaagtgaatct 16642291  T
Q  205 tggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggag 289  Q
    || ||||| |||  ||||||||||||| ||  ||| | ||||||||||||| || ||||| ||||  | ||||||||| ||||||    
T  16642290 tgaagaaccaaa--agagggctcttgggaaagggttggtgccttttggggacagattcatggggttaggaaacacatgagtggag 16642208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 429
Target Start/End: Original strand, 35616143 - 35616259
Alignment:
Q  314 agtgaaatcattgagtctatttttca-tggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataacc 412  Q
    |||||||||||||||||| || ||||  |||||||| |||||||   |||||||||| || ||| |||| ||| || ||| ||| ||||||||| |||||    
T  35616143 agtgaaatcattgagtctcttgttcacgggaagagattgagaaatgagtagaaattaggtttgttcttggagagctcgtttaagttaatttcttgtaacc 35616242  T
Q  413 gttttgtatctctttgt 429  Q
     |||||||| |||||||    
T  35616243 cttttgtatttctttgt 35616259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 299
Target Start/End: Complemental strand, 21206183 - 21205972
Alignment:
Q  88 catttgttaagagagcttgtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaat 187  Q
    |||||| | ||||| |||||||||||||||||||| | | || | |  |||||||||||||| ||  |||| |||  |||| |||  ||||||||||       
T  21206183 catttgctgagagaacttgtgaatctcatggaaaccatatgaggggttttttagggaacttagaagataaaagttaagggtatttaagtgagattcatgg 21206084  T
Q  188 tgtccaaatatgaattttggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtgg 287  Q
    ||||||||| ||||| || |||||| ||||||  ||| |||| | ||  ||| | || |||||  |||||||||||| |||| || ||||||||| |||     
T  21206083 tgtccaaatgtgaatcttagagaaccaaaagatggggttctttggaaagggttggtgtctttttcggagaggttcatagggttgggaaacacatgagtga 21205984  T
Q  288 agagtcatttgt 299  Q
     |||||||||||    
T  21205983 ggagtcatttgt 21205972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 27015234 - 27015380
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttg-gaaattggtcgatgccttttg 251  Q
    ||||||||||| |||||||||||||||  |||||   || | || ||||| ||| ||||| ||||||| ||||||||| ||||  ||| | |||||||||    
T  27015234 actaaaggttgagggtctttgggtgaggatcaaagcttcaagatgtgaatcttgaagaaccaaaagagggggctcttgtgaaaagggttggtgccttttg 27015333  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||| ||  |||| |||| || ||||||||| |||||||||| |||||    
T  27015334 ggga-agaatcatggggttgggaaacacatgagtggagagtcttttgt 27015380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 264
Target Start/End: Original strand, 35615874 - 35615985
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttggaaattggtcgatgccttttgg 252  Q
    ||||||||||| ||||||||| ||||| ||||||   || | || ||||| ||||||||| ||||||| || ||||||| ||  ||  ||||||||||||    
T  35615874 actaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggggactcttgggaaaggggtgatgccttttgg 35615973  T
Q  253 ggagaggttcat 264  Q
    |||||| |||||    
T  35615974 ggagagattcat 35615985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 429
Target Start/End: Complemental strand, 42310148 - 42310013
Alignment:
Q  296 ttgtaaacatttttggtaagtgaaa-tcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttg 393  Q
    ||||||||||||| ||||||||||| ||||||||| | ||  |||| |  |||| ||||||| ||| ||||||| |||| ||  |||   || |||||||    
T  42310148 ttgtaaacattttgggtaagtgaaaatcattgagtgtcttgctcattggtgagattgagaaattgggtagaaatcaagtttgatctttgtgagcttgttg 42310049  T
Q  394 aagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||| ||||  ||||||||||||||||    
T  42310048 aagctaatttcttgtaactcttttgtatctctttgt 42310013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 9049462 - 9049420
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  9049462 cttgttgaagctaatttcttgtaaccattttgtatctctttgt 9049420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 13239796 - 13239841
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||    
T  13239796 gaacttgttgaagctaatttcttgtaactcttttgtatctctttgt 13239841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 13488248 - 13488293
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  13488248 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 13488293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 14689920 - 14689807
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||||||||||  | |||||||||| | ||| | | | ||||||  ||||||||| ||||  |||||| | || | || ||||||||    
T  14689920 gtgaatctcatggaaactaaaggagaaaacttttagggcatttagatagtgaaggttaagggtctttgagtgatgttcaaagtttcaagatgtgaatttt 14689821  T
Q  206 ggagaactaaaaga 219  Q
    ||||||| ||||||    
T  14689820 ggagaaccaaaaga 14689807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 30683047 - 30683002
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||||    
T  30683047 gaacttgttgaagctaatttcttgtaacccttttgtatttctttgt 30683002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 39468672 - 39468627
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  39468672 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 39468627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 42428553 - 42428508
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  42428553 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 42428508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 30792872 - 30792968
Alignment:
Q  83 tgacacatttgttaagagagcttg-tgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtga 178  Q
    |||| |||||||||||  |||||| |||||||||||||||| ||| ||  | |||||||||| | ||| | ||||||||||| |||||||| |||||    
T  30792872 tgacccatttgttaagtaagcttggtgaatctcatggaaaccaaatgagtaaacttttagggtaattagatactaaaggttgagggtctttaggtga 30792968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 32576417 - 32576377
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctcttt 427  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  32576417 cttgttgaagctaattacttataaccattttgtatctcttt 32576377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 25412739 - 25412850
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgtttt 417  Q
    |||||||||||| | || ||||| |  |||| || ||||| ||||||||||| |  ||| |||   ||||||||  ||||||||||||| ||||| ||||    
T  25412739 aaatcattgagtgtcttgttcattggtgagattgggaaaagggtagaaattagggttgttctttgtgaacttgtcaaagctaatttcttgtaaccctttt 25412838  T
Q  418 gtatctctttgt 429  Q
    ||||||||||||    
T  25412839 gtatctctttgt 25412850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 538073 - 538115
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  538073 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 538115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 13695811 - 13695769
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||    
T  13695811 cttgttaaagctaatttcttgtaacccttttgtatctctttgt 13695769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 28278364 - 28278406
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  28278364 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 28278406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 4160645 - 4160690
Alignment:
Q  353 gaaaatggtagaaattaagtatgtccttgaagaacttgttgaagct 398  Q
    ||||||||||||||||| || ||| |||| ||||||||||||||||    
T  4160645 gaaaatggtagaaattaggtttgttcttggagaacttgttgaagct 4160690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 427
Target Start/End: Complemental strand, 10700801 - 10700729
Alignment:
Q  354 aaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctcttt 427  Q
    |||| ||||||||||| || ||| |||  ||| |||||||||||||| ||||||||||  ||||||||||||||    
T  10700801 aaaaaggtagaaattaggtttgttcttagagagcttgttgaagctaa-ttcttataacatttttgtatctcttt 10700729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 30802733 - 30802782
Alignment:
Q  243 tgccttttggggagaggttcattgggtaggaaaacacatgggtggagagt 292  Q
    |||||||||||||||| ||||| ||||  ||||||||||| |||||||||    
T  30802733 tgccttttggggagagattcatggggttagaaaacacatgagtggagagt 30802782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 38747053 - 38747094
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    |||||||||||||||||||| |||||  ||||||||||||||    
T  38747053 cttgttgaagctaatttcttgtaacccatttgtatctctttg 38747094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 36 - 295
Target Start/End: Original strand, 34112199 - 34112456
Alignment:
Q  36 cgtgacacgattttgcttgaatttgaacactatatataagcatcatctgacacatttgttaagagagcttgtgaatctcatggaaactaaaggatgagac 135  Q
    |||||||||||||||| || |||||||||| |||||  |||||| | |||| |||||||| || ||||| |  ||| | ||| |||  ||||||    ||    
T  34112199 cgtgacacgattttgcctgtatttgaacacaatata--agcatcttttgacccatttgttgagtgagctcgataatataatgaaaatcaaaggagataac 34112296  T
Q  136 ttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttggaaat 235  Q
    ||||||| |||||  ||||||||| ||| ||||||||| |||||||||||| ||||||| | ||||| ||||| |||  |||||   ||||||| ||||     
T  34112297 ttttaggaaactttgaaactaaagattgagggtctttgtgtgagattcaaaatgtccaattgtgaatcttggataacctaaagacgaggctcttagaaaa 34112396  T
Q  236 tggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcat 295  Q
     ||| | |||||||||||||||||||||  |||| |||||||||||| ||||||||||||    
T  34112397 gggttggtgccttttggggagaggttcacggggttggaaaacacatgagtggagagtcat 34112456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 107 - 405
Target Start/End: Complemental strand, 38811590 - 38811291
Alignment:
Q  107 tgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttg 206  Q
    ||||||||||||||||||||||| |  |||||||||| ||||| | ||||||||||| |||| |||||||||| ||||||   |  | || ||||| |||    
T  38811590 tgaatctcatggaaactaaaggagggaacttttagggtacttagatactaaaggttgagggtatttgggtgaggttcaaagctttaagatgtgaatcttg 38811491  T
Q  207 gagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtc-atttgtaaacat 305  Q
    ||||||  |||||| |||||||||| ||  ||| | || |||||| |||||| |||||  |||  | ||||||||  |||||||||| ||| |||||||     
T  38811490 gagaacccaaagag-gggctcttgggaaagggttggtgtcttttgcggagagattcatgaggttaggaaacacataagtggagagtcaattggtaaacac 38811392  T
Q  306 ttttggtaagtgaaatcattgagtctatttttcat-ggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttc 404  Q
     || ||| |||||||||||||||||| || ||||| | |||||| |||||||  |||| ||||||||| ||| |||| |||  ||||||||  |||||||    
T  38811391 cttgggtgagtgaaatcattgagtctcttgttcatagaaagagattgagaaatgggtacaaattaagtttgttcttggagagtttgttgaatttaatttc 38811292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 40630640 - 40630832
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| ||||||||| ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  40630640 gtgaatctcatggaaaccaaaggatgaaacttttaggg-ttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 40630738  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| | ||| ||| ||||  ||| | ||||||||||||| || ||||| |||| || ||||||||| |||||||||| |||||    
T  40630739 ggagaaccaaaagagggagcttttgtgaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagtcttttgt 40630832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 8665063 - 8665255
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    ||||||||||||||||| |||||| |||| |||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| |    
T  8665063 gtgaatctcatggaaaccaaagga-gagaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatct 8665160  T
Q  205 tggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||||||| ||||||| |||||||| |||||  ||| | ||||||||||||| || ||||| |||| || ||||||| | |||||||||| |||||    
T  8665161 tggagaaccaaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacaggagtggagagtcttttgt 8665255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 50263210 - 50263018
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    |||||||||||| |||| |||||| |  ||||||||||   ||| | ||||||||||| | ||||||||||||| ||||||   || | || ||||| ||    
T  50263210 gtgaatctcatgaaaaccaaaggagggaacttttagggtt-ttagacactaaaggttgagagtctttgggtgaggttcaaagcttcaagatgtgaatctt 50263112  T
Q  206 ggagaactaaaagagagggctcttgg-aaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||||| |||  ||| | ||||||||||||| || ||||| |||| || ||||||||| |||||||||| |||||    
T  50263111 ggagaaccaaaagagggggctcttggaaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagtcttttgt 50263018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 54882676 - 54882868
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || |||| ||||| ||    
T  54882676 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaaaatgtgaatctt 54882774  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| ||||||||  ||||  ||| | |||||||||| || || ||||| |||| || ||||||||| ||| |||||| |||||    
T  54882775 ggagaaccaaaagagggggctcttatgaaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtgtagagtcttttgt 54882868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 12073049 - 12073240
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| ||||||||  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || | ||| ||    
T  12073049 gtgaatctcatggaaaccaaaggatggaacttttaggg-ttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtaaatctt 12073147  T
Q  206 ggagaactaaaagagagggctcttgg--aaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| ||||||||||  |||  ||| | ||||||||||| |||  ||||| |||| |||||||||||| ||| |||||| |||||    
T  12073148 ggagaaccaaaagag-gggctcttgggaaaaagggttggtgccttttgggaaga--ttcatggggttggaaaacacatgagtgaagagtcttttgt 12073240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 26363921 - 26364113
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| || ||| |  ||||||||||   ||| | ||||||||||| ||| ||||||||||| ||||||   || | || ||||| ||    
T  26363921 gtgaatctcatggaaaccaagggagggaacttttagggtt-ttagatactaaaggttgagggcctttgggtgaggttcaaagcttcaagatgtgaatctt 26364019  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| ||||||||| ||||  ||| |  ||||||||| || || ||||| |||| || ||||||||| ||||||||||||||||    
T  26364020 ggagaaccaaaagagggggctcttgtgaaaagggttggggccttttggaga-agattcatggggttgggaaacacatgagtggagagtcatttgt 26364113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 33089601 - 33089747
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttggaaattggtcgatgccttttgg 252  Q
    ||||||| ||| ||||||||||||||| |||||| | |  | || ||||| ||||||||  ||||||| |||||||||| |   ||| | || |||||||    
T  33089601 actaaagattgagggtctttgggtgaggttcaaagtttgaagatgtgaatcttggagaatcaaaagagggggctcttgggagagggttggtgtcttttgg 33089700  T
Q  253 ggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
     ||||| ||||| |||| | |||||||||| ||||||||||||||||    
T  33089701 agagagattcatggggtcgaaaaacacatgagtggagagtcatttgt 33089747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 297
Target Start/End: Original strand, 6655615 - 6655802
Alignment:
Q  109 aatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttgga 208  Q
    |||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   |  | || ||||| |||||    
T  6655615 aatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaaactttaagatgtgaatcttgga 6655713  T
Q  209 gaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcattt 297  Q
    |||| ||||||| |||||||| || ||  ||| | |||||||||| || || ||||| |||| || ||||||||| ||||||||||||||    
T  6655714 gaaccaaaagagggggctcttggggaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggagagtcattt 6655802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 429
Target Start/End: Original strand, 32091455 - 32091568
Alignment:
Q  317 gaaatcattgagtctatttttcatggaaga-gactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgtt 415  Q
    ||||||||||||||| || ||||||| ||| || || ||||||| ||||||||| || ||| |||| |||  |||||||| |||||||||| ||||  ||    
T  32091455 gaaatcattgagtctcttgttcatgggagaagattgggaaaatgctagaaattaggtttgttcttggagagtttgttgaaactaatttcttgtaactctt 32091554  T
Q  416 ttgtatctctttgt 429  Q
    ||||||||||||||    
T  32091555 ttgtatctctttgt 32091568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 33989518 - 33989710
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||| |    |||||||||| | ||| | ||||||| ||| ||||||||||||||| ||||||   || | || ||||| ||    
T  33989518 gtgaatctcatggaaaccaaagcagataacttttagggtatttagatactaaagtttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 33989617  T
Q  206 ggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    | ||||| |||| || |||||||||| |   ||| | |||||||| ||||||| ||||| || | || ||||||||| ||||||||||||||||    
T  33989618 gaagaaccaaaatagggggctcttgggagaaggttggtgcctttt-gggagagattcatgggattgggaaacacatgagtggagagtcatttgt 33989710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 35662144 - 35662283
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-ggaaattggtcgatgccttttg 251  Q
    ||||||||||| | ||||||||||||| ||||||   || | || ||||| ||||||||| ||||||| |||||||| |||||  ||| | |||||||||    
T  35662144 actaaaggttgagagtctttgggtgaggttcaaagcttcaatatgtgaatcttggagaaccaaaagagggggctcttaggaaaagggttggtgccttttg 35662243  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagt 292  Q
    |||| || ||||| |||| ||||||||||||  ||||||||    
T  35662244 ggga-agattcatggggttggaaaacacatgaatggagagt 35662283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 281
Target Start/End: Original strand, 41961050 - 41961237
Alignment:
Q  94 ttaagagagcttgtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttggg-tgagattcaaattgtcc 192  Q
    ||||| |||||||||||| ||||| |||  |||||| |  ||||||| | ||| ||||  ||||||| || ||||||||||| ||||||||||| |||||    
T  41961050 ttaagtgagcttgtgaatatcatgaaaatcaaaggagggaacttttacgaaacataaaggctaaagggtgagggtctttggggtgagattcaaagtgtcc 41961149  T
Q  193 aaatatgaattttggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacat 281  Q
    |||| ||||| ||| |||||  ||| || ||||||| || |   ||||| ||| |||||||||||| |||| ||||| || ||||||||    
T  41961150 aaatgtgaatcttgtagaaccgaaaaagggggctctagggagaaggtcggtgctttttggggagagattca-tgggttgggaaacacat 41961237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 22629439 - 22629325
Alignment:
Q  68 tatataagcatcatctgacacatttgttaagagagcttgtgaatctcatggaaactaaagga-tgagacttttagggaacttaaaaactaaaggttgggg 166  Q
    |||||||||||||| |||| |||||||| || ||||||| ||||||||| ||||| ||| || ||| ||||||||| || ||| ||||||||||||  |     
T  22629439 tatataagcatcatttgactcatttgttgagggagcttgagaatctcatagaaaccaaatgagtga-acttttaggaaatttagaaactaaaggttcagt 22629341  T
Q  167 gtctttgggtgagatt 182  Q
    |||| |||||||||||    
T  22629340 gtctctgggtgagatt 22629325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 8653256 - 8653380
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    ||||||||||||||||| |||||| |||| |||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| |    
T  8653256 gtgaatctcatggaaaccaaagga-gagaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatct 8653353  T
Q  205 tggagaactaaaagagagggctcttgg 231  Q
    |||||||| ||||||| ||||||||||    
T  8653354 tggagaaccaaaagagggggctcttgg 8653380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 10071973 - 10072050
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttg 230  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||||||||||||||| |||||||||    
T  10071973 actaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaactaaaagagggggctcttg 10072050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 41964072 - 41964197
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||  |||||| |  |||||||||| |  || | ||||||||||| ||||||||||||||| ||||||   ||   || ||||| ||    
T  41964072 gtgaatctcatggaaatcaaaggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcatgatgtgaatctt 41964171  T
Q  206 ggagaactaaaagagagggctcttgg 231  Q
    ||||||| ||||||| ||||||||||    
T  41964172 ggagaaccaaaagagggggctcttgg 41964197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 56178760 - 56178715
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  56178760 gaacttgttgaagctaatttcttgtaacccttttgtatctctttgt 56178715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 293
Target Start/End: Complemental strand, 27417463 - 27417277
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    |||||||||||| |||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   |  | || ||||| ||    
T  27417463 gtgaatctcatgaaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagctttaagatgtgaatctt 27417365  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtc 293  Q
    ||||||| ||||||  |||||||| |||||  ||| | || |||||||||| || ||||| |||| || ||||||||| ||||||||||    
T  27417364 ggagaaccaaaagaaggggctcttgggaaaggggttggtgtcttttgggga-agattcatggggttgggaaacacatgagtggagagtc 27417277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 33089900 - 33089964
Alignment:
Q  361 tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctct 425  Q
    ||||||||| || ||| |||| ||| ||||||||||||||||| |||||||| ||||||||||||    
T  33089900 tagaaattatgtttgttcttggagagcttgttgaagctaatttattataaccattttgtatctct 33089964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 44570531 - 44570444
Alignment:
Q  341 ggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||| ||| |||||||||||||||| || |||  ||| ||| ||||||||| |||||||||| ||||  ||||||||||||||||    
T  44570531 ggaagagattga-aaaatggtagaaattatgtttgttgttggagagcttgttgaaactaatttcttgtaacatttttgtatctctttgt 44570444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 55085832 - 55085685
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaa-atatgaattttggagaactaaaagagagggctcttgga-aattggtcgatgcctttt 250  Q
    ||||||||||| ||||||||||||||| || |||   | ||| || | ||| ||||||||| ||||||| ||||||||||  ||  ||| | ||||||||    
T  55085832 actaaaggttgagggtctttgggtgaggttaaaagctttcaagatgtaaatcttggagaaccaaaagagggggctcttggggaaagggttggtgcctttt 55085733  T
Q  251 ggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||| || ||||| |||| || ||||||||| ||||||||||||||||    
T  55085732 gggga-agattcatggggttgggaaacacatgagtggagagtcatttgt 55085685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 47515012 - 47514838
Alignment:
Q  108 gaatctcatggaaactaaagga-tgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttg 206  Q
    ||||||||||||||| ||| || ||| |||||||||| ||||||| |||||||||||  |||||| ||||||  ||||||   || | |||||||| |||    
T  47515012 gaatctcatggaaaccaaatgagtga-acttttagggtacttaaacactaaaggttgaaggtcttcgggtgaagttcaaagcttcaagatatgaatcttg 47514914  T
Q  207 gagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatg 282  Q
    | |||| ||||||| || ||||||| || || | |||| |||||| ||| | || ||| |||| || |||||||||    
T  47514913 gtgaaccaaaagagtggactcttgggaaatgattgatgtcttttgaggaaatgtgcatagggttgggaaacacatg 47514838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 294
Target Start/End: Original strand, 2209410 - 2209551
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-ggaaattggtcgatgccttttg 251  Q
    ||||||| ||| ||||||||||||||| ||||||   || | || ||||| ||||||||| ||| ||| || ||||| |||||  ||| | |||||||||    
T  2209410 actaaagattgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaacgaggggactcttgggaaaagggttggtgccttttg 2209509  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtca 294  Q
    |||| || ||||| |||| || ||||||||| |||||||||||    
T  2209510 ggga-agattcatggggttgggaaacacatgagtggagagtca 2209551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 4588007 - 4588049
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  4588007 cttgttgaagctaatttcttgtaacccttttgtatctctttgt 4588049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 48143088 - 48143130
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctt 426  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  48143088 gaacttgttgaagctaatttcttgtaacccttttgtatctctt 48143130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 50674358 - 50674237
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||||| |||||| |||  ||||||||||||||| ||||||   || | || ||||| ||    
T  50674358 gtgaatctcatggaaaccaaaggagggaacttttaggg-ttttaaatactaaatgttaagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 50674260  T
Q  206 ggagaactaaaagagagggctct 228  Q
    ||||||| ||||||| |||||||    
T  50674259 ggagaaccaaaagagggggctct 50674237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 8648188 - 8648229
Alignment:
Q  388 ttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  8648188 ttgttgaagctaatttcttataacccatttgtatctctttgt 8648229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 9927581 - 9927536
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  9927581 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 9927536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 12119584 - 12119629
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||    
T  12119584 gaactttttgaagctaatttcttgtaacccttttgtatctctttgt 12119629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 37740670 - 37740715
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  37740670 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 37740715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 54200029 - 54199984
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  54200029 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 54199984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 3785750 - 3785898
Alignment:
Q  110 atctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggag 209  Q
    ||||||||||||  ||||||||  |||||||||  || |  | ||||||||||| | |||||| || ||||||||||   || | || ||||| ||| ||    
T  3785750 atctcatggaaatcaaaggatggaacttttaggatacatggatactaaaggttgagagtctttaggcgagattcaaagcttcaagatgtgaatcttgaag 3785849  T
Q  210 aactaaaagagagggctcttggaaattggtcgatgccttttggggagag 258  Q
    ||| ||||||| |||||||||||||  ||| | ||||||||| ||||||    
T  3785850 aaccaaaagagggggctcttggaaaagggttggtgccttttgaggagag 3785898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 429
Target Start/End: Original strand, 6677421 - 6677559
Alignment:
Q  293 catttgtaaacatttttggtaagtgaaatcattgagtctatttttcatgg-aagagactgagaaaatggtagaaattaagtatgtc--cttgaagaactt 389  Q
    ||||||||||||  || | | |||||||| ||||||||| || ||| ||| |||| | || ||||||||||||||||| || | |   |||| ||| |||    
T  6677421 catttgtaaacacattggatgagtgaaataattgagtctcttgttcttgggaagaaattg-gaaaatggtagaaattaggttttttttcttggagagctt 6677519  T
Q  390 gttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||| ||||| |||||||| |||||||    
T  6677520 gttgaagctaatttcttgtaacccttttgtatatctttgt 6677559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 34788929 - 34788853
Alignment:
Q  353 gaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||| |  ||  |||| ||| |||||||||| ||||||||| ||||  ||||||||||||||||    
T  34788929 gaaaatggtagaaattaggattgctcttggagagcttgttgaagttaatttcttgtaactcttttgtatctctttgt 34788853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 6655976 - 6656046
Alignment:
Q  359 ggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||  ||| |||   ||||||||||||||||||||||| ||||   |||||||||||||||    
T  6655976 ggtagaaattaaggttgttctttgtgaacttgttgaagctaatttcttgtaactcatttgtatctctttgt 6656046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 8665428 - 8665498
Alignment:
Q  359 ggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||| |  ||| |||  ||| |||||||||||||||||||| |||||  |||||||||||||||    
T  8665428 ggtagaaattagggttgttctttgagagcttgttgaagctaatttcttgtaacccatttgtatctctttgt 8665498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 22882870 - 22882832
Alignment:
Q  388 ttgttgaagctaatttcttataaccgttttgtatctctt 426  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  22882870 ttgttgaagctaatttcttgtaacccttttgtatctctt 22882832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 426
Target Start/End: Complemental strand, 22934534 - 22934496
Alignment:
Q  388 ttgttgaagctaatttcttataaccgttttgtatctctt 426  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  22934534 ttgttgaagctaatttcttgtaacccttttgtatctctt 22934496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 26699563 - 26699521
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| ||||  ||||||||||||||||    
T  26699563 cttgttgaagctaatttcttgtaactcttttgtatctctttgt 26699521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 27417085 - 27417043
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  27417085 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 27417043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 36463509 - 36463467
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  36463509 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 36463467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 40632493 - 40632535
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  40632493 cttgttgaagctaatttcttgtaacctatttgtatctctttgt 40632535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 429
Target Start/End: Original strand, 41961393 - 41961507
Alignment:
Q  316 tgaaatcattgagtctatttttcatg-gaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgt 414  Q
    |||||||||||||||| || |||||| ||||||| ||  ||||  ||||||||||||| ||| | || ||| |||| |   ||||||||||| ||| | |    
T  41961393 tgaaatcattgagtctcttgttcatgagaagagattggaaaaagagtagaaattaagtttgttcatggagagcttggtagtgctaatttcttgtaatcat 41961492  T
Q  415 tttgtatctctttgt 429  Q
    |||||||||||||||    
T  41961493 tttgtatctctttgt 41961507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 429
Target Start/End: Complemental strand, 44968045 - 44967908
Alignment:
Q  293 catttgtaaacatttttggtaagtgaaatcattgagtctatttttcatgg-aagagactgagaaaatggtagaaattaag-tatgtccttgaagaacttg 390  Q
    ||||||||||||  || | | ||||||||||||||| || || ||| ||| |||||| || ||||||||||||||||| | | ||  |||| ||| ||||    
T  44968045 catttgtaaacaaattggttgagtgaaatcattgagcctgttgttcttgggaagagattgggaaaatggtagaaattaggttttgctcttggagagcttg 44967946  T
Q  391 ttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
     |||||| |||||||| |||||  |||||||||||||||    
T  44967945 ctgaagccaatttcttgtaacc-atttgtatctctttgt 44967908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 50262821 - 50262779
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  50262821 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 50262779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 54883068 - 54883110
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  54883068 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 54883110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 379385 - 379470
Alignment:
Q  345 gagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||| ||||||||||| ||||||||| || ||| |||   || |||||||||||||||||||| |||||  |||||||| ||||||    
T  379385 gagattgagaaaatgggtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatcgctttgt 379470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 429
Target Start/End: Complemental strand, 21704031 - 21703914
Alignment:
Q  314 agtgaaatcattgagtctatttttcatgg-aagagactgagaaaatggtagaaattaag-tatgtccttgaagaacttgttgaagctaatttcttataac 411  Q
    |||||||||||| |||||||| ||| ||| |||||| |||||||| ||||||||||| | | ||| |||  | | |||||||||| | ||||||| || |    
T  21704031 agtgaaatcattaagtctattgttcttgggaagagattgagaaaaaggtagaaattaggttttgttcttagaaagcttgttgaagatgatttcttgtacc 21703932  T
Q  412 cgttttgtatctctttgt 429  Q
    | |||||||||| |||||    
T  21703931 ctttttgtatctttttgt 21703914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 26364281 - 26364326
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| ||||   |||||||||||||||    
T  26364281 gaacttgttgaagctaatttcttgtaactcatttgtatctctttgt 26364326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 33989893 - 33989934
Alignment:
Q  388 ttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||| ||| | ||||||||||||||||    
T  33989893 ttgttgaagctaatttcttgtaatccttttgtatctctttgt 33989934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 34112838 - 34112907
Alignment:
Q  360 gtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||| || ||| || | ||| |||||||||||||||||| | ||||| ||||| ||||||||||    
T  34112838 gtagaaattatgtttgttctaggagagcttgttgaagctaatttcatgtaacccttttgcatctctttgt 34112907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 34570537 - 34570492
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||   ||||||||||||||    
T  34570537 gaacttgttgaagctaatttcttgtaacccaattgtatctctttgt 34570492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 25723642 - 25723554
Alignment:
Q  193 aaatatgaattttggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacat 281  Q
    |||| ||||| ||||||||| ||||||| | ||||||||| | ||||  ||||||||||| ||||| ||| | |||| || ||||||||    
T  25723642 aaatgtgaatcttggagaaccaaaagagggagctcttggataatggttaatgccttttggagagagcttcgtggggttgggaaacacat 25723554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 33706644 - 33706593
Alignment:
Q  359 ggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataac 411  Q
    |||||||||||||| | || |||| || |||||||||||||||||||||||||    
T  33706644 ggtagaaattaagtttttcattga-gatcttgttgaagctaatttcttataac 33706593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 36994502 - 36994614
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || ||||| |  |||| || |||||||| |||||||||||  ||| |||   || |||||||||||||||||||| |||||  ||    
T  36994502 aaatcattgagtgtcttgttcattggtgagattgggaaaatgggtagaaattaaggttgttctttgtgagcttgttgaagctaatttcttgtaacccatt 36994601  T
Q  417 tgtatctctttgt 429  Q
    |||||| ||||||    
T  36994602 tgtatccctttgt 36994614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 40935752 - 40935579
Alignment:
Q  44 gattttgcttgaatttgaacactatatataagcatcatctgacacatttgttaagagagcttgtgaatctcatggaaactaaaggatgagact-tttagg 142  Q
    |||||||| || || |||||||||||||  |||||||| | || |||||||| ||||| |||  ||||||||||||||| |||||| |||||  ||||||    
T  40935752 gattttgcatggatctgaacactatata--agcatcattttacccatttgttgagagaacttaagaatctcatggaaaccaaagga-gagaccgtttagg 40935656  T
Q  143 gaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaaga 219  Q
    ||||||| ||||||||||||| ||| ||||||| |||||||||| ||||||||| ||||| | ||||||| ||||||    
T  40935655 gaacttagaaactaaaggttgagggcctttgggagagattcaaagtgtccaaatgtgaatctaggagaaccaaaaga 40935579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 299
Target Start/End: Original strand, 24397740 - 24397906
Alignment:
Q  134 acttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-gga 232  Q
    |||||||||| | ||| | |||||||||||  |||||||| ||||| ||||||   || |||| ||||| ||||||||| ||||||| |||||||| |||    
T  24397740 acttttagggtatttagatactaaaggttgacggtctttgtgtgaggttcaaagcttcaaaatgtgaatcttggagaaccaaaagagggggctcttggga 24397839  T
Q  233 aattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||  ||| | |||||||| |||||||  |||| |||  || ||||||||| ||||||||||||||||    
T  24397840 aaagggttggtgccttttagggagagactcatcgggctggtaaacacatgagtggagagtcatttgt 24397906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 429
Target Start/End: Complemental strand, 42261683 - 42261564
Alignment:
Q  314 agtgaaatcattgagtctatttttcatggaag----agactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttata 409  Q
    |||||| ||||||||||| || |||||| |||    ||| ||||||||| ||||||||||||| ||| |||| ||| |||||||||||||||||||| ||    
T  42261683 agtgaactcattgagtctcttgttcatgaaaggaggagattgagaaaatcgtagaaattaagtttgttcttggagagcttgttgaagctaatttcttgta 42261584  T
Q  410 accgttttgtatctctttgt 429  Q
    ||  |||||||| |||||||    
T  42261583 actcttttgtatatctttgt 42261564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 42262190 - 42261999
Alignment:
Q  37 gtgacacgattttgcttgaatttgaacactatatataagcatcatctgacacatttgttaagagagctt-gtgaatctcatggaaactaaaggatgagac 135  Q
    |||||||||||||||||| || |||||||||  |||||||||| | |||| |||||||| ||  ||||| ||||||||||||  ||| |||||| |   |    
T  42262190 gtgacacgattttgcttggatctgaacacta--tataagcatcctttgacccatttgttgagcaagcttggtgaatctcatgagaaccaaaggagggagc 42262093  T
Q  136 ttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt 229  Q
    |||||||| |  || | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||||||| |||| || ||||||||    
T  42262092 ttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaaaagggggctctt 42261999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 317 - 429
Target Start/End: Complemental strand, 30218236 - 30218123
Alignment:
Q  317 gaaatcattgagtctatttttcatggaag-agactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgtt 415  Q
    ||||||||||||| | || |||||||||| ||| |||||||  ||||||| ||| || ||| |||| ||| ||| |||||||||||||||| ||||| ||    
T  30218236 gaaatcattgagtgtcttgttcatggaaggagattgagaaatgggtagaagttaggtttgttcttggagagcttattgaagctaatttcttgtaaccatt 30218137  T
Q  416 ttgtatctctttgt 429  Q
    ||||||||||||||    
T  30218136 ttgtatctctttgt 30218123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 45726586 - 45726777
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| ||| || |  ||||||||||   ||| | ||||||||||| | ||||||||||||| ||||||   || | || ||||| ||    
T  45726586 gtgaatctcatggaaaccaaatgagggaacttttagggtt-ttagatactaaaggttgagagtctttgggtgaggttcaaagcttcaagatgtgaatctt 45726684  T
Q  206 ggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| | |||||||| ||  ||| | ||||||||||||| || ||||| ||||  | ||||||||| ||||||||||||||||    
T  45726685 ggagaaccaaaagagggagctcttgggaaagggttggtgccttttgggga-agattcatggggtttggaaacacatgagtggagagtcatttgt 45726777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 1632244 - 1632052
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||| ||||| ||||||   || | || ||||| ||    
T  1632244 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatctt 1632146  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    || |||| ||||||| ||||||||| ||||  ||| | || |||||||||| || ||||| |||| || ||||||||| |||||||||| |||||    
T  1632145 ggggaaccaaaagagggggctcttgtgaaaagggttggtgtcttttgggga-agattcatggggttgggaaacacatgagtggagagtcttttgt 1632052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 459
Target Start/End: Complemental strand, 42020087 - 42019921
Alignment:
Q  294 atttgtaaacatttttggtaagtgaaatcattgagtctatttttcat-ggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgtt 392  Q
    ||||||||||||  | ||| ||||||||||||||||||||||||| | |||||||| |   |||| ||||||| ||| || ||| |||  | | |||||     
T  42020087 atttgtaaacatcgtgggtgagtgaaatcattgagtctatttttcttgggaagagattagaaaaagggtagaatttatgtttgttcttataaagcttgta 42019988  T
Q  393 gaagctaatttcttataaccgttttgtatctctttgtnnnnnnnnctcattgatagtgaattggaga 459  Q
    |||||||||||||| ||||  ||||||||||||||||        ||||||||||||||||| ||||    
T  42019987 gaagctaatttcttgtaactcttttgtatctctttgtaaaaaaaactcattgatagtgaatttgaga 42019921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 42288575 - 42288430
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-ggaaattggtcgatgccttttg 251  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||| ||||| ||||||| |||||||| |||||  ||| | |||||||||    
T  42288575 actaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaatcttgaagaaccaaaagagggggctcttgggaaaagggttggtgccttttg 42288476  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    || |||  ||||| |||| || ||||||||| |||||||||| |||||    
T  42288475 ggaaga--ttcatggggttgggaaacacatgagtggagagtcttttgt 42288430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 33647824 - 33648018
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    |||||| |||||||||| |||||| |||| ||||||| | | ||| | |||||||||||  |||||||||||||| |||||| | || | || ||||| |    
T  33647824 gtgaatttcatggaaaccaaagga-gagaacttttagagtatttagatactaaaggttgaaggtctttgggtgaggttcaaagtttcaagatgtgaatct 33647922  T
Q  205 tggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||||||  |||||||  ||||||| |||||  ||| | ||||||||| |||||| ||||   ||| |||||||| ||| || |||||||||||||    
T  33647923 tggagaatcaaaagaggaggctcttgggaaaagggttggtgccttttgaggagagattcacgaggttggaaaacatatgagtagagagtcatttgt 33648018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 7450957 - 7451148
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | |||||||||||| | |||||||||||| ||||||   ||   || ||||| ||    
T  7450957 gtgaatctcatggaaacaaaaggagggaacttttagggtt-ttagatactaaaggttggcg-tctttgggtgaggttcaaagcttcaggatgtgaatctt 7451054  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||| || ||  ||| |||| ||||||| || || || || |||| |||||||||||| ||||||||||||||||    
T  7451055 ggagaaccaaaagagggggctctttggtaaagggttgatgacttttggaga-agatttatggggttggaaaacacatgagtggagagtcatttgt 7451148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 5723445 - 5723334
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgtttt 417  Q
    |||||||||||| | || ||||| |  |||| |||||||| ||||||||||| |  ||| |||   ||||||||  ||||||||||||| ||||| ||||    
T  5723445 aaatcattgagtgtcttgttcattggtgagattgagaaaagggtagaaattaggcttgttctttgtgaacttgtcaaagctaatttcttgtaaccttttt 5723346  T
Q  418 gtatctctttgt 429  Q
    ||||||||||||    
T  5723345 gtatctctttgt 5723334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 429
Target Start/End: Complemental strand, 6595159 - 6595084
Alignment:
Q  354 aaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||| |  ||| |||   ||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  6595159 aaaatggtagaaattagggttgttctttgtgaacttgttgaagctaatttcttgtaacccttttgaatctctttgt 6595084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 17450249 - 17450371
Alignment:
Q  108 gaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttgg 207  Q
    ||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||| ||||| ||||||   || | || ||||| ||||    
T  17450249 gaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgagtgaggttcaaagcttcaagatgtgaatcttgg 17450347  T
Q  208 agaactaaaagagagggctcttgg 231  Q
    ||||| ||||||| ||||||||||    
T  17450348 agaaccaaaagagggggctcttgg 17450371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 24398105 - 24398147
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  24398105 cttgttgaagctaatttcttgtaacccttttgtatctctttgt 24398147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 421
Target Start/End: Original strand, 3897005 - 3897072
Alignment:
Q  354 aaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtat 421  Q
    |||||| |||||||||||  ||| ||||||||||| |||||||||||||| || ||||  ||||||||    
T  3897005 aaaatgatagaaattaagattgttcttgaagaactcgttgaagctaattttttgtaactcttttgtat 3897072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 11049601 - 11049644
Alignment:
Q  387 cttgttgaagctaatttcttataaccgtttt-gtatctctttgt 429  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  11049601 cttgttgaagctaatttcttataacccttttagtatctctttgt 11049644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 7815393 - 7815351
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| ||||  ||||||||||||||||    
T  7815393 cttgttgaagctaatttcttgtaactcttttgtatctctttgt 7815351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 45726977 - 45727019
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  45726977 cttgttgaagctaatttcttgtaacctatttgtatctctttgt 45727019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 2334541 - 2334496
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||  ||||  ||||||||||||||||    
T  2334541 gaacttgttgaagctaatttctagtaactcttttgtatctctttgt 2334496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 4561137 - 4561178
Alignment:
Q  388 ttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||| ||||  ||||||||||||||||    
T  4561137 ttgttgaagctaatttcttgtaacatttttgtatctctttgt 4561178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 38312285 - 38312330
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||| |||||||||| |||||  |||||||||||||||    
T  38312285 gaacttgttgaaactaatttcttgtaacccatttgtatctctttgt 38312330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 4484487 - 4484411
Alignment:
Q  351 gagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctcttt 427  Q
    ||||||| ||||||||||| |  ||| |||   ||||||||  ||||||||||||| ||||| ||||||||||||||    
T  4484487 gagaaaagggtagaaattagggttgttctttgtgaacttgtcaaagctaatttcttgtaacccttttgtatctcttt 4484411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 11348354 - 11348546
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| ||||||||  ||||||||||   ||| | ||||| ||||| ||||||||||||||| |||||| | || | || ||||| ||    
T  11348354 gtgaatctcatggaaaccaaaggatggaacttttagggtt-ttagatactaagggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatctt 11348452  T
Q  206 ggagaactaaaagagagggctcttggaaattggtc-gatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||||| ||  |||| | |||||||||| || || ||||| |||| |||||||||||| ||||||||||||||||    
T  11348453 ggagaaccaaaagagggggctcttgggaaaaggtctggtgccttttggaga-agattcatggggttggaaaacacatgagtggagagtcatttgt 11348546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 28242044 - 28242236
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    |||||||||||| |||| |||||| |  |||||||||| |  || | ||||||||||| ||||||||||||||| ||||||   || |||| ||||| ||    
T  28242044 gtgaatctcatgaaaaccaaaggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaaaatgtgaatctt 28242143  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||| |||||  ||| | ||||||||||| |||  |||||  ||| || ||||||||| ||||||||||||||||    
T  28242144 ggagaaccaaaagagggggctcttgggaaaagggttggtgccttttgggaaga--ttcataaggttgggaaacacatgagtggagagtcatttgt 28242236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 429
Target Start/End: Complemental strand, 9109611 - 9109498
Alignment:
Q  317 gaaatcattgagtctatttttcatggaag-agactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgtt 415  Q
    |||||| |||||| | || ||||||| || ||| ||||||||||| ||||||||||| | | |||| |||||||||||||| ||||||||| ||||| ||    
T  9109611 gaaatccttgagtgtcttgttcatggtaggagattgagaaaatggaagaaattaagtttttacttggagaacttgttgaagttaatttcttgtaaccctt 9109512  T
Q  416 ttgtatctctttgt 429  Q
    ||||||||||||||    
T  9109511 ttgtatctctttgt 9109498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 7482743 - 7482550
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| || ||||||||||   ||| | ||||| ||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  7482743 gtgaatctcatggaaaccaaaggaggaaacttttaggg-ttttagatactaacggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 7482645  T
Q  206 ggagaactaaaaga-gagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| |||||| | |||||||| |||||  ||| | ||||||||||||| || ||||| |||| || ||||||||| |||||||||| |||||    
T  7482644 ggagaaccaaaagaggggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagtcttttgt 7482550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 298
Target Start/End: Complemental strand, 42298469 - 42298296
Alignment:
Q  124 aaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagg 223  Q
    ||||||||| ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||||||| ||||||| ||    
T  42298469 aaaggatgaaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggg 42298371  T
Q  224 gctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttg 298  Q
    ||||||| ||||  ||| | |||||||||| || || ||||| |||| || ||||||||| |||||||||||||||    
T  42298370 gctcttgtgaaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggagagtcatttg 42298296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 37033539 - 37033393
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-ggaaattggtcgatgccttttg 251  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||||||| ||||||| |||||||| |||||  ||| | |||||||||    
T  37033539 actaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttg 37033440  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
     ||| || |||||  ||| || ||||||||| ||||||||||||||||    
T  37033439 agga-agattcatgaggttgggaaacacatgagtggagagtcatttgt 37033393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 37167999 - 37168145
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-ggaaattggtcgatgccttttg 251  Q
    ||||||||||| |||| |||||||||| ||||||   || | || ||||| ||||||||| ||||||| |||||||| |||||  ||| | |||||||||    
T  37167999 actaaaggttgagggtttttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttg 37168098  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||| || ||||| |||| || ||||||||| |||||||||| |||||    
T  37168099 ggga-agattcatggggttgggaaacacatgagtggagagtcttttgt 37168145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 292
Target Start/End: Original strand, 29135866 - 29136088
Alignment:
Q  69 atataagcatcatctgacacatttgttaagagagcttg-tgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttggggg 167  Q
    ||||||||||  | |||| |||||||| ||  |||||| |||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| |||    
T  29135866 atataagcattctttgacccatttgttgagtaagcttggtgaatctcatggaaaccaaaggagggaacttttaggg-ttttagatactaaaggttgaggg 29135964  T
Q  168 tctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattg 266  Q
    |||||| ||||| ||||||   || | || ||||| ||||||||| ||||||| || ||||| |||||  ||| | ||||||||||||| || ||||| |    
T  29135965 tctttgagtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggggactcttgggaaaagggttggtgccttttgggga-agattcatgg 29136063  T
Q  267 ggtaggaaaacacatgggtggagagt 292  Q
    ||| |||||| ||||| |||||||||    
T  29136064 ggttggaaaa-acatgagtggagagt 29136088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 299
Target Start/End: Original strand, 6808031 - 6808295
Alignment:
Q  34 atcgtgacacgattttgcttgaatttgaacactatatataagcatcatctgacacatttgttaagagagcttg-tgaatctcatggaaactaaaggatga 132  Q
    ||||||||| |||||||| || || |||||| ||||||  || ||||| || | |||||||| ||  |||||| |||||||||||||||| |||||| ||    
T  6808031 atcgtgacaagattttgcctggatctgaacagtatata--agtatcatttggctcatttgttgagtaagcttggtgaatctcatggaaaccaaaggagga 6808128  T
Q  133 gacttttagggaacttaaaaactaaaggttg-ggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttgg 231  Q
     ||||||||     ||| | ||||||||||| ||||||||| |||||| ||||||   || | || ||||| ||||||||| ||||||  ||||||||||    
T  6808129 aacttttagattttttagatactaaaggttgaggggtctttaggtgaggttcaaaacttcaagatgtgaatcttggagaaccaaaagattgggctcttgg 6808228  T
Q  232 aaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    | |    | | || |||||||| |||| ||||| |||| ||||||||||||  || ||||||||||||    
T  6808229 agagattttg-tgtcttttgggaagagattcatggggttggaaaacacatgaatgaagagtcatttgt 6808295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 13547555 - 13547409
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttg-gaaattggtcgatgccttttg 251  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||| ||| ||||||| | ||||||| ||||  ||||| |||||||||    
T  13547555 actaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggataaccaaaagagggagctcttgtgaaaagggtcggtgccttttg 13547456  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
     ||| |  ||||| |||| |||||||||||| |||||||||| |||||    
T  13547455 agga-aaattcatggggttggaaaacacatgagtggagagtcttttgt 13547409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 13549466 - 13549320
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttg-gaaattggtcgatgccttttg 251  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||| ||| ||||||| | ||||||| ||||  ||||| |||||||||    
T  13549466 actaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggataaccaaaagagggagctcttgtgaaaagggtcggtgccttttg 13549367  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
     ||| |  ||||| |||| |||||||||||| |||||||||| |||||    
T  13549366 agga-aaattcatggggttggaaaacacatgagtggagagtcttttgt 13549320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 428
Target Start/End: Original strand, 2926523 - 2926597
Alignment:
Q  354 aaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    |||||||||||||||| || ||| ||||||||||||||| ||| |||||| || ||||| ||||| |||||||||    
T  2926523 aaaatggtagaaattaggtttgtgcttgaagaacttgttaaagttaatttattgtaacctttttgcatctctttg 2926597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 47255846 - 47255722
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  47255846 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 47255748  T
Q  206 ggagaactaaaagagagggctcttgg 231  Q
    ||||||| ||||||  ||||||||||    
T  47255747 ggagaaccaaaagatggggctcttgg 47255722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 3156843 - 3156955
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || ||||| |  |||| ||||||||||| ||||||||| |  ||| |||   ||||||||||||||||||||||| |||||  ||    
T  3156843 aaatcattgagtgtcttgttcattggtgagattgagaaaatgggtagaaattagggttgttctttgtgaacttgttgaagctaatttcttgtaacccatt 3156942  T
Q  417 tgtatctctttgt 429  Q
    |||||||||||||    
T  3156943 tgtatctctttgt 3156955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 4552827 - 4552715
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || ||||| |  |||| ||||||||||| ||||||||| || |||||||   || |||||||||||||||||||| |||||  ||    
T  4552827 aaatcattgagtgtcttgttcattggtgagattgagaaaatgggtagaaattaggtttgtcctttgtgagcttgttgaagctaatttcttgtaacccctt 4552728  T
Q  417 tgtatctctttgt 429  Q
    |||||| ||||||    
T  4552727 tgtatccctttgt 4552715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 429
Target Start/End: Original strand, 22079318 - 22079406
Alignment:
Q  341 ggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||| ||  |||||||||||||||| || ||| |||   || |||||| ||||||||||||| ||||| ||||||||||||||||    
T  22079318 ggaagagattggaaaaatggtagaaattatgtttgttctttgtgagcttgttaaagctaatttcttgtaaccattttgtatctctttgt 22079406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 49918328 - 49918440
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || ||||| |  |||| ||||||||||| ||||||||| |  ||| |||   ||||||||||||||||||||||| |||||  ||    
T  49918328 aaatcattgagtgtcttgttcattggtgagattgagaaaatgggtagaaattagggttgttctttgtgaacttgttgaagctaatttcttgtaacccatt 49918427  T
Q  417 tgtatctctttgt 429  Q
    |||||||||||||    
T  49918428 tgtatctctttgt 49918440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 37879377 - 37879231
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttg-gaaattggtcgatgccttttg 251  Q
    |||||| |||| || |||||||||||| ||||||   || | || ||||| ||||||||| ||||||| ||||||||| ||||  ||| | |||||||||    
T  37879377 actaaatgttgaggatctttgggtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaagagggggctcttgtgaaaaaggttggtgccttttg 37879278  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||| |  ||||| |||| || ||||||||| |||||||||| |||||    
T  37879277 ggga-aaattcatggggttgggaaacacatgagtggagagtcttttgt 37879231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 19752734 - 19752776
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||| |||||||||||||||    
T  19752734 cttgttgaagctaatttcttgtaaccgatttgtatctctttgt 19752776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 19754147 - 19754339
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||  | || | ||||||||||  ||||||||||||||| ||||||    |   || ||||| ||    
T  19754147 gtgaatctcatggaaaccaaaggagggaacttttagggttc-tagatactaaaggttaagggtctttgggtgaggttcaaagcaccatgatttgaatctt 19754245  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||| ||| || |||| ||||||||| ||||  ||| | ||||||||||||| || ||||| |||| || ||||||||| |||||||||| |||||    
T  19754246 ggaaaaccaagagagggggctcttgtgaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagtcttttgt 19754339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 19754543 - 19754585
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||| |||||||||||||||    
T  19754543 cttgttgaagctaatttcttgtaaccgatttgtatctctttgt 19754585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 34602851 - 34602659
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | | |||||||||  |||||||||||||  ||||||   || | || ||||| ||    
T  34602851 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatattaaaggttgaaggtctttgggtgatgttcaaagcttcaagatgtgaatctt 34602753  T
Q  206 ggagaactaaaagagagggctcttgg-aaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| | |||||||| |||  ||| | ||||||||||||| || ||||| |||| |||||||||||| ||| | |||| |||||    
T  34602752 ggagaaccaaaagagggagctcttggtaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtgaaaagtcttttgt 34602659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 34603232 - 34603424
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | | |||||||||  |||||||||||||  ||||||   || | || ||||| ||    
T  34603232 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatattaaaggttgaaggtctttgggtgatgttcaaagcttcaagatgtgaatctt 34603330  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| | |||||| |||||  ||| | ||||||||||||| || ||||| |||| |||||||||||| ||| | |||| |||||    
T  34603331 ggagaaccaaaagagggagctcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtgaaaagtcttttgt 34603424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 6068301 - 6068354
Alignment:
Q  134 acttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaat 187  Q
    ||||||||||||||||||  ||||| |||| |||||||||| ||||||||||||    
T  6068301 acttttagggaacttaaaggctaaaagttgagggtctttggatgagattcaaat 6068354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 426
Target Start/End: Complemental strand, 12318717 - 12318604
Alignment:
Q  314 agtgaaatcattgagtctatttttcatgga-agagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataacc 412  Q
    |||||||||||||||| | || |||||||  ||||| |  ||||  ||||||||||| || ||| | || ||| |||||||||||||||||||| |||||    
T  12318717 agtgaaatcattgagtttcttgttcatgggtagagatttggaaatgggtagaaattaggtttgttcatggagagcttgttgaagctaatttcttgtaacc 12318618  T
Q  413 gttttgtatctctt 426  Q
     |||||||| ||||    
T  12318617 attttgtatgtctt 12318604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 28220349 - 28220304
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  28220349 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 28220304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 28223544 - 28223499
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  28223544 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 28223499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 25652064 - 25652176
Alignment:
Q  318 aaatcattgagtctatttttcatg-gaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || |||||| ||| | | ||||||| ||||||||||||||| |||  ||  |||  ||||||||||||||||||| ||||  | |    
T  25652064 aaatcattgagtattttgttcatgagaaaatattgagaaattggtagaaattaagtgtgttatttgagagtttgttgaagctaatttcttgtaactctct 25652163  T
Q  417 tgtatctctttgt 429  Q
    |||||||||||||    
T  25652164 tgtatctctttgt 25652176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 4535630 - 4535559
Alignment:
Q  358 tggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||| ||| |||| ||| ||| ||||||  |||||||| ||||  ||||||||||||||||    
T  4535630 tggtagaaattaagtttgttcttggagagcttattgaagtcaatttcttgtaacatttttgtatctctttgt 4535559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 19752388 - 19752526
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttggaaattggtcgatgccttttgg 252  Q
    |||||||||||  |||||||||||||| ||| ||  |||  ||| ||||| ||||||||| ||||||  ||||||||   ||  ||| | ||||||||||    
T  19752388 actaaaggttgaaggtctttgggtgaggttctaagcgtcataatgtgaatcttggagaaccaaaagatggggctcttatgaaaaggttggtgccttttgg 19752487  T
Q  253 ggagaggttcattgggtaggaaaacacatgggtggagagt 292  Q
    ||| || ||||||| || || ||||||||| |||||||||    
T  19752488 gga-agattcattgagttgggaaacacatgagtggagagt 19752526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 41135835 - 41135910
Alignment:
Q  354 aaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||| |||||||||||  | ||| |||||||||||| |||||| ||||||||| ||| | |||||||||| |||||    
T  41135835 aaaagggtagaaattagatttgttcttgaagaactttttgaagttaatttcttgtaaaccttttgtatctatttgt 41135910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 928096 - 928054
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||    
T  928096 cttgttgaagctaatttcttgtaacccttttggatctctttgt 928054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 264
Target Start/End: Complemental strand, 9109914 - 9109756
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    |||||| |||||||||  ||| ||||| |||||| ||| |  |||| ||||||||||| |||| |||||||||| ||||||   || | || ||||| ||    
T  9109914 gtgaatgtcatggaaatcaaatgatgaaacttttggggtatataaatactaaaggttgagggtatttgggtgaggttcaaaacttcaagatgtgaatctt 9109815  T
Q  206 ggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcat 264  Q
    ||||||| |||| || || ||| ||| |   ||| |||| ||||||||||||| |||||    
T  9109814 ggagaaccaaaaaaggggactcatgggagagggttgatgtcttttggggagagattcat 9109756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 28265674 - 28265632
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  28265674 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 28265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 31659286 - 31659328
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  31659286 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 31659328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 31925827 - 31925785
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  31925827 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 31925785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 47255460 - 47255418
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  47255460 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 47255418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 16914342 - 16914253
Alignment:
Q  341 ggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaa-tttcttataaccgttttgtatctctttgt 429  Q
    |||||||| || ||||  |||| |||||| || ||| |||| ||| | |||||||||||| |||||| ||||| ||||||||||||||||    
T  16914342 ggaagagattgggaaatgggtaaaaattatgtttgttcttggagagcctgttgaagctaagtttcttctaacccttttgtatctctttgt 16914253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 23555388 - 23555343
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||| |||||||||||||||   |||||||||||||||    
T  23555388 gaacttgttgaaactaatttcttataactcatttgtatctctttgt 23555343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 429
Target Start/End: Complemental strand, 1050638 - 1050522
Alignment:
Q  314 agtgaaatcattgagtctatttttcatg-gaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataacc 412  Q
    |||||||| ||||||||| || |||||| ||||||| || ||||  |||  |||||| || ||| |||  ||| ||| |||||||||||||||| ||||     
T  1050638 agtgaaattattgagtctcttgttcatgtgaagagattgggaaatgggtgaaaattaggtgtgttcttcgagagcttattgaagctaatttcttgtaaca 1050539  T
Q  413 gttttgtatctctttgt 429  Q
     |||||| |||||||||    
T  1050538 tttttgtgtctctttgt 1050522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 11348746 - 11348786
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctcttt 427  Q
    |||||||||||||||||||| |||||  |||||||||||||    
T  11348746 cttgttgaagctaatttcttgtaacccatttgtatctcttt 11348786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 13316475 - 13316431
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||    
T  13316475 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttg 13316431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 38747113 - 38747053
Alignment:
Q  222 gggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatg 282  Q
    ||||||||| |||  ||| | |||||||||| ||||||||||| |||| ||||||||||||    
T  38747113 gggctcttgaaaaagggttggtgccttttggagagaggttcatagggttggaaaacacatg 38747053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 429
Target Start/End: Original strand, 41360872 - 41361004
Alignment:
Q  298 gtaaacatttttggtaagtgaaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaag 396  Q
    |||||||| || ||| |||||||  ||||||| | || ||||| |  |||| || |||||||| ||||||||| || ||| |||   || |||||||||     
T  41360872 gtaaacatcttgggtgagtgaaaatattgagtgtcttgttcattggtgagattgggaaaatgggtagaaattaggtttgttctttgtgagcttgttgaaa 41360971  T
Q  397 ctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||| |||||  |||||||||||||||    
T  41360972 ctaatttcttgtaacccatttgtatctctttgt 41361004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 6984 - 7176
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  6984 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 7082  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| ||||||||| ||||  ||| | ||||||||||||| || ||||| |||| |||||||||||| |||||||||| |||||    
T  7083 ggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtggagagtcttttgt 7176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 7375 - 7417
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  7375 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 7417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 34311229 - 34311036
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  |||||||||| |  || | ||||||||||| ||||| ||||||||| ||||||   || | || ||||| ||    
T  34311229 gtgaatctcatggaaaccaaaggaaggaacttttagggtatgtagatactaaaggttgagggtccttgggtgaggttcaaagcttcaagatgtgaatctt 34311130  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||| |||||  ||| | ||||||||||||| |||||||| |||  |||||||||||| |||||||||| |||||    
T  34311129 ggagaaccaaaagagggggctcttgggaaaagggttggtgccttttgggga-aggttcatggggatggaaaacacatgagtggagagtcttttgt 34311036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 4512901 - 4512710
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| |  |||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  4512901 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagattctaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 4512803  T
Q  206 ggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
     |||||| ||||||| |||||||||| ||  ||| | ||||||||||||| || ||||| ||||  | ||||||||| ||||||||||||||||    
T  4512802 agagaaccaaaagagggggctcttgggaaagggttggtgccttttgggga-agattcatggggtttggaaacacatgagtggagagtcatttgt 4512710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 267
Target Start/End: Original strand, 5116290 - 5116451
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    |||||||||||||| || |||||| | ||||||||||| | ||||| ||||||||||| |||||||| |||||  ||||||   || | || ||||| ||    
T  5116290 gtgaatctcatggataccaaaggaggggacttttagggtatttaaatactaaaggttgagggtctttaggtgatgttcaaaacttcaagatgtgaatctt 5116389  T
Q  206 ggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgg 267  Q
     |||||| ||||||| |||||||||| |   ||||| |||||||||| ||||| ||||||||    
T  5116390 tgagaaccaaaagagggggctcttgggagagggtcggtgccttttggagagagattcattgg 5116451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 429
Target Start/End: Complemental strand, 1360354 - 1360229
Alignment:
Q  307 tttggtaagtgaaatcattgagtctatttttcatggaa-gagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttct 405  Q
    |||||| |||||||||||||||||| || ||||||||| |||| || ||||| ||||||||||| || |   |||| ||||||||||||||| |||||||    
T  1360354 tttggtgagtgaaatcattgagtctcttgttcatggaatgagattgggaaaaaggtagaaattaggttttgtcttggagaacttgttgaagcgaatttct 1360255  T
Q  406 tataacc--gttttgtatctctttgt 429  Q
    | |||||   ||||||||||||||||    
T  1360254 tgtaacccttttttgtatctctttgt 1360229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 2389938 - 2390130
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| || ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  2389938 gtgaatctcatggaaaccaaaggaggaaacttttaggg-ttttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 2390036  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||| ||| ||||||| ||||| ||| ||||  ||| | || |||||||||| || ||||| |||| |||||||||||| ||||| |||| |||||    
T  2390037 ggaaaaccaaaagagggggctattgcgaaaagggttggtggcttttgggga-agattcatggggttggaaaacacatgagtggatagtcttttgt 2390130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 6431627 - 6431819
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||| ||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  6431627 gtgaatctcatagaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaatctt 6431725  T
Q  206 ggagaactaaaagagagggctcttgga-aattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| ||||||||||  ||  ||| | ||||||||||||| || ||||| |||| |||||||||||| ||| |||||| |||||    
T  6431726 ggagaaccaaaagagggggctcttggggaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtgtagagtcttttgt 6431819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 88 - 299
Target Start/End: Complemental strand, 22328931 - 22328718
Alignment:
Q  88 catttgttaagagagctt-gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaa 186  Q
    |||||||||||  ||||| ||||||||||||||||| ||||||  | |||||||||| | ||| | ||||||||||| || |||||||  ||| || |||    
T  22328931 catttgttaagtaagcttagtgaatctcatggaaaccaaaggagaaaacttttagggtatttagatactaaaggttgaggatctttggtggaggttaaaa 22328832  T
Q  187 ttgtccaaatatgaattttggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggt 285  Q
       || | || | ||| ||||||||| ||||||| |||||||| |||||   || | |||||||||||||||| ||||| |||| || ||| ||||| ||    
T  22328831 gcttcaagatgtaaatcttggagaaccaaaagagggggctcttaggaaaagagttggtgccttttggggagagattcatagggttgggaaaaacatgagt 22328732  T
Q  286 ggagagtcatttgt 299  Q
     |||||||||||||    
T  22328731 agagagtcatttgt 22328718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 293 - 421
Target Start/End: Original strand, 26639273 - 26639402
Alignment:
Q  293 catttgtaaacatttttggtaagtgaaatcattgagtctatttttcatgg-aagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgt 391  Q
    |||||||||||| ||| ||| ||| |||||||||||||| || ||  ||| |||||| || ||||||||||||||||| |||||| |||| |||  ||||    
T  26639273 catttgtaaacactttaggtgagtaaaatcattgagtctcttctttttgggaagagattgtgaaaatggtagaaattaggtatgttcttggagagtttgt 26639372  T
Q  392 tgaagctaatttcttataaccgttttgtat 421  Q
    ||| | ||||||||| ||||| ||||||||    
T  26639373 tgatgttaatttcttgtaacccttttgtat 26639402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 255
Target Start/End: Complemental strand, 32358348 - 32358199
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  32358348 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 32358250  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttgggga 255  Q
    ||||||| ||||||| ||||||||| ||||  ||| | |||||||||||||    
T  32358249 ggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttgggga 32358199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 29608397 - 29608520
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  29608397 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaaacttcaagatgtgaatctt 29608495  T
Q  206 ggagaactaaaagagagggctcttg 230  Q
    ||||||| ||||||| |||||||||    
T  29608496 ggagaaccaaaagagggggctcttg 29608520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 2361483 - 2361291
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||| |  ||| | ||||||| ||| |||||||||||||||||||||    || | || ||||| ||    
T  2361483 gtgaatctcatggaaaccaaaggagggaacttttagg-attttagatactaaagattgagggtctttgggtgagattcaatccttcaagatgtgaatctt 2361385  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    | ||||  ||||||| ||||||||| ||||  ||| | |||||||||||||  | ||||| |||| || ||||||||| |||||||||| |||||    
T  2361384 gaagaatcaaaagagggggctcttgtgaaaagggttggtgccttttgggga-tgattcatggggttgggaaacacatgagtggagagtcttttgt 2361291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 3258651 - 3258838
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| | |||| |  |||||||||| |  || | ||||||||||| ||||||||||||||| ||||||   ||   || ||||| ||    
T  3258651 gtgaatctcatggaaaccagaggagggaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcatgatgtgaatctt 3258750  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtc 293  Q
    ||||||| ||||||  |||||||| |||||  ||| | ||||||||||||| || ||||| |||  || ||||| ||| ||||||||||    
T  3258751 ggagaacaaaaagatggggctcttgggaaaagggttggtgccttttgggga-agattcatggggatgggaaacatatgagtggagagtc 3258838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 47674133 - 47674021
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || ||||| |  |||| ||||||||||| ||||||||| |  ||| |||   ||||||||||||||||||||||| |||||  ||    
T  47674133 aaatcattgagtgtcttgttcattggtgagattgagaaaatgggtagaaattagggttgttctttgtgaacttgttgaagctaatttcttgtaacccatt 47674034  T
Q  417 tgtatctctttgt 429  Q
    |||||||||||||    
T  47674033 tgtatctctttgt 47674021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 22269630 - 22269815
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  || ||||||| |  || | ||||||| ||| ||||||||||||||| ||||||    | | || ||||| ||    
T  22269630 gtgaatctcatggaaaccaaaggagggaacatttagggtatgtagatactaaagtttgagggtctttgggtgaggttcaaagctacaagatgtgaatctt 22269729  T
Q  206 ggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtc 293  Q
    ||||||| ||||||| |||||||||| ||   || | ||||||||||||| || ||||| |||  || ||||||||| ||||||||||    
T  22269730 ggagaaccaaaagag-gggctcttgggaaagagttggtgccttttgggga-agattcatggggaggggaaacacatgagtggagagtc 22269815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 22552897 - 22552822
Alignment:
Q  159 ggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttggaaa 234  Q
    ||||| |||||||||||||||||| |||  ||| |||| ||||| || |||||| ||||||| |||||||||||||    
T  22552897 ggttgagggtctttgggtgagatttaaagggtcaaaatgtgaatcttagagaaccaaaagagggggctcttggaaa 22552822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 1113705 - 1113747
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  1113705 cttgttgaagctaatttcttataacccatttgtatctctttgt 1113747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 428
Target Start/End: Original strand, 48491534 - 48491668
Alignment:
Q  296 ttgtaaacatttttggtaagtgaaa-tcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttg 393  Q
    ||||||||| ||| ||| ||||||| ||||||||| | || ||||| |  |||| || |||||||| ||||||||| |  ||| |||   ||||||||||    
T  48491534 ttgtaaacactttgggtgagtgaaaatcattgagtgtcttgttcattggtgagattgggaaaatgggtagaaattagggttgttctttgtgaacttgttg 48491633  T
Q  394 aagctaatttcttataaccgttttgtatctctttg 428  Q
    ||||||||||||| |||||  ||||||||||||||    
T  48491634 aagctaatttcttgtaacccatttgtatctctttg 48491668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 6360424 - 6360301
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    ||||||||||||||||| |||||| |||| |||||||||   ||| | | ||||||||| ||||||||||||||| || ||| | || | || ||||| |    
T  6360424 gtgaatctcatggaaaccaaagga-gagaacttttagggtt-ttagatattaaaggttgagggtctttgggtgaggttaaaagtttcaagatgtgaatct 6360327  T
Q  205 tggagaactaaaagagagggctcttg 230  Q
    |||||||| ||||||| |||||||||    
T  6360326 tggagaaccaaaagagggggctcttg 6360301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 27347862 - 27347907
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  27347862 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 27347907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 4509117 - 4509026
Alignment:
Q  207 gagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||||| ||||||| | |||||||| ||  ||| | ||||||||||||| || ||||| |||| || ||||||||| ||||||||||||||||    
T  4509117 gagaaccaaaagagggagctcttgggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagtcatttgt 4509026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 4510959 - 4510868
Alignment:
Q  207 gagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||||| ||||||| | |||||||| ||  ||| | ||||||||||||| || ||||| |||| || ||||||||| ||||||||||||||||    
T  4510959 gagaaccaaaagagggagctcttgggaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagagtcatttgt 4510868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 31733159 - 31733047
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || ||||| |  |||||||||||||||| ||||||||| |  ||| |||   || |||| ||||||||||||||| |||||  ||    
T  31733159 aaatcattgagtgtcttgttcattggtgagactgagaaaatgggtagaaattagggttgttctttgtgagcttggtgaagctaatttcttgtaacccatt 31733060  T
Q  417 tgtatctctttgt 429  Q
    |||||||||||||    
T  31733059 tgtatctctttgt 31733047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 43363628 - 43363556
Alignment:
Q  353 gaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctct 425  Q
    ||||||||||||||||| || ||| |||| ||| ||||||||| ||||||| || ||||  ||||||||||||    
T  43363628 gaaaatggtagaaattaggtttgttcttggagagcttgttgaaactaatttattgtaactcttttgtatctct 43363556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 48599836 - 48599757
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaa 186  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||    
T  48599836 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaa 48599757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 23555055 - 23555130
Alignment:
Q  354 aaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||| |  ||| |||   ||||||||||||||||||||||| ||||  ||||||| ||||||||    
T  23555055 aaaatggtagaaattagggttgttctttgtgaacttgttgaagctaatttcttgtaacacttttgtacctctttgt 23555130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 48489477 - 48489520
Alignment:
Q  385 aacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    |||||||||||||||||||||| |||||  ||||||||||||||    
T  48489477 aacttgttgaagctaatttcttgtaacccatttgtatctctttg 48489520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 2390330 - 2390372
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  2390330 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 2390372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 6360072 - 6360030
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  6360072 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 6360030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 6432019 - 6432061
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  6432019 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 6432061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 22270021 - 22270063
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  22270021 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 22270063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 30024852 - 30024810
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  30024852 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 30024810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 32358174 - 32358132
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  32358174 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 32358132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 369
Target Start/End: Complemental strand, 3904833 - 3904756
Alignment:
Q  293 catttgtaaacatttttggtaagtgaaatcattgagtctatttttcat-ggaagagactgagaaaatggtagaaatta 369  Q
    ||||||||||||  || ||  |||||||||||||||||| || ||| | |||||||| || |||||||||||||||||    
T  3904833 catttgtaaacaccttgggcgagtgaaatcattgagtctcttgttcttaggaagagattgggaaaatggtagaaatta 3904756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 4509206 - 4509130
Alignment:
Q  109 aatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaa 186  Q
    |||||||||||||| ||||||||  ||||||||||   ||| | ||||||||||| |||| |||||||||| ||||||    
T  4509206 aatctcatggaaaccaaaggatggaacttttaggg-ttttagatactaaaggttgagggtttttgggtgaggttcaaa 4509130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 4511048 - 4510972
Alignment:
Q  109 aatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaa 186  Q
    |||||||||||||| ||||||||  ||||||||||   ||| | ||||||||||| |||| |||||||||| ||||||    
T  4511048 aatctcatggaaaccaaaggatggaacttttaggg-ttttagatactaaaggttgagggtttttgggtgaggttcaaa 4510972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 18126689 - 18126734
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||| ||||||||||||| |||||  |||||||||||||||    
T  18126689 gaacttgttcaagctaatttcttgtaacccatttgtatctctttgt 18126734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 22328511 - 22328470
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    |||||||||||||||||||| ||||  |||||||||||||||    
T  22328511 cttgttgaagctaatttcttgtaactcttttgtatctctttg 22328470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 35853959 - 35854004
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  35853959 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttgt 35854004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 36574635 - 36574594
Alignment:
Q  388 ttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||| ||||| |||| |||||||||||    
T  36574635 ttgttgaagctaatttcttgtaacccttttatatctctttgt 36574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 43864289 - 43864334
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||| | |||||  |||||||||||||||    
T  43864289 gaacttgttgaagctaatttcctgtaacccatttgtatctctttgt 43864334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 47676255 - 47676214
Alignment:
Q  388 ttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||| |||||  |||||||||||||||    
T  47676255 ttgttgaagctaatttcttgtaacccatttgtatctctttgt 47676214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 30814421 - 30814500
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaa 186  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||| ||||||| ||||||||||||||| ||||||    
T  30814421 gtgaatctcatggaaaccaaaggagggaacttttaggg-ttttagatacttaaggttgagggtctttgggtgaggttcaaa 30814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 108 - 297
Target Start/End: Original strand, 1683146 - 1683334
Alignment:
Q  108 gaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttgg 207  Q
    ||||||||||||||  ||| || ||||  |||| |||||||| ||||||||||||| |||||||||||||||||||||||  | ||||| ||||| ||||    
T  1683146 gaatctcatggaaatcaaatga-gagaaatttatggaacttagaaactaaaggttgagggtctttgggtgagattcaaatgtttcaaatgtgaatcttgg 1683244  T
Q  208 agaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcattt 297  Q
    ||||| |||||||| || | || | ||  ||| | ||| ||||||| |||| ||||| |||| |||||||||||| ||||| | ||||||    
T  1683245 agaaccaaaagagaaggtttttcggaaagggttggtgcattttgggaagagattcatggggttggaaaacacatgagtggataatcattt 1683334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 106 - 298
Target Start/End: Complemental strand, 43404245 - 43404054
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| ||| || |  ||||||||||   ||| | |||||| |||| ||||||||||||||| |||||| | || | || ||||| ||    
T  43404245 gtgaatctcatggaaaccaaatgagggaacttttagggtt-ttagatactaaaagttgagggtctttgggtgaggttcaaagtttcaagatgtgaatctt 43404147  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttg 298  Q
    ||||||| ||||||| |||||||| |||||  ||| | ||||||||||||| || ||||| |||| |||||||||||| |||||||||||||||    
T  43404146 ggagaaccaaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatggggttggaaaacacatgagtggagagtcatttg 43404054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 28074273 - 28074458
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| || ||||||||||   ||| | ||||||||||| ||||||||||||||| |||||| | || | || ||||| ||    
T  28074273 gtgaatctcatggaaaccaaaggaggaaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatctt 28074371  T
Q  206 ggagaactaaaagagagggctcttggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtc 293  Q
    ||||||| ||||||| |||||||||| || | || | ||| ||||||||| || ||||| |||  || ||||||||| ||||||||||    
T  28074372 ggagaaccaaaagagggggctcttgggaaatagttggtgcgttttgggga-agattcatggggatgggaaacacatgagtggagagtc 28074458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 40912994 - 40913187
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| | |||||||||||   ||| | ||||||||||  ||||||||||||||| ||||||   || |||| ||||| ||    
T  40912994 gtgaatctcatggaaaccaaaggaggggacttttagggtt-ttagatactaaaggtttagggtctttgggtgaggttcaaagcttcaaaatgtgaatctt 40913092  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||| |||||  ||| | |||||||| ||   || ||||| |||| || ||||||||| ||||||||||||||||    
T  40913093 ggagaaccaaaagagggggctcttgggaaaagggttggtgcctttttggagaagattcatggggttgggaaacacatgagtggagagtcatttgt 40913187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 304
Target Start/End: Complemental strand, 43402302 - 43402105
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    |||||||| |||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  43402302 gtgaatcttatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatctt 43402204  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgtaaaca 304  Q
    ||||||| ||||||| ||||||||| ||||  ||| | ||||||||||||| || ||||| |||| || ||||||||| ||||||| |||||||| ||||    
T  43402203 ggagaaccaaaagagggggctcttgagaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagtggagaatcatttgtgaaca 43402105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 88 - 299
Target Start/End: Original strand, 46860108 - 46860319
Alignment:
Q  88 catttgttaagagagcttg-tgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaa 185  Q
    |||||||||| |||||||| |||||||||||||||| ||| || |||| ||||||||| |  || | ||||||||||| ||||||||||||||| |||||    
T  46860108 catttgttaa-agagcttggtgaatctcatggaaaccaaatga-gagaacttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaa 46860205  T
Q  186 attgtccaaatatgaattttggagaactaaaagagagggctcttgg-aaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatggg 284  Q
    |   ||   || ||||| ||||||||| ||||||| |||||||||| |||  ||| | ||||||||||||| || ||||| |||  || ||||||||| |    
T  46860206 agcttcatgatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttgggga-agattcatagggatgggaaacacatgag 46860304  T
Q  285 tggagagtcatttgt 299  Q
    |||||||||||||||    
T  46860305 tggagagtcatttgt 46860319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 49199983 - 49199791
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| |||||| | || | || ||||| ||    
T  49199983 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagtttcaagatgtgaatctt 49199885  T
Q  206 ggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| ||||| ||| ||||  ||| | ||||||||||||| || ||||| |||| || ||||| ||| |||||||||| |||||    
T  49199884 ggagaaccaaaagagggggctattgtgaaaagggttggtgccttttgggga-agattcatggggttgggaaacatatgagtggagagtcttttgt 49199791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 54593360 - 54593553
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  |||||||||| |  || | ||||||||||| ||||| ||||||||| ||||||   || | || ||||| ||    
T  54593360 gtgaatctcatggaaaccaaaggagggaacttttagggtatgtagatactaaaggttgagggtccttgggtgaggttcaaagcttcaagatgtgaatctt 54593459  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| |||||||| |||||  ||| | | ||||||||||| || ||||| |||  |||||||||||| |||||||||| |||||    
T  54593460 ggagaaccaaaagagggggctcttgggaaaagggttggtaccttttgggga-agattcatggggatggaaaacacatgagtggagagtcttttgt 54593553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 6096065 - 6095919
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctc-ttggaaattggtcgatgccttttg 251  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||||||| ||||||| |||||| || ||||  ||| | |||||||||    
T  6096065 actaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttttgaaaagggttggtgccttttg 6095966  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||| || ||||| |||| || ||||||||| ||||||||||||||||    
T  6095965 ggga-agattcatggggttgggaaacacatgagtggagagtcatttgt 6095919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 30235827 - 30235973
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttg-gaaattggtcgatgccttttg 251  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||||||| ||||||| ||||||||| ||||  ||| | |||||||||    
T  30235827 actaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttg 30235926  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||| |  ||||| |||| |||||||||| | ||||||||||||||||    
T  30235927 ggga-atattcatggggttggaaaacacaagagtggagagtcatttgt 30235973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 34490869 - 34491061
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgaga-cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattt 204  Q
    ||||||||||||||||| |||||| |||| |||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| |    
T  34490869 gtgaatctcatggaaaccaaagga-gagaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatct 34490966  T
Q  205 tggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||||||| ||||||| ||||||||| ||||  ||| | |||||||||| || || ||||| | || | |||||||||| ||||||||||||||||    
T  34490967 tggagaaccaaaagagggggctcttgtgaaaagggttggtgccttttggaga-agattcatggagttgaaaaacacatgagtggagagtcatttgt 34491061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 299
Target Start/End: Original strand, 4569538 - 4569799
Alignment:
Q  36 cgtgacacgattttgcttgaatttgaacactatatataagcatcatctgacacatttgttaagagagcttg-tgaatctcatggaaactaaaggatgaga 134  Q
    ||||||||||||||||| | |||||||||  | ||||||||||  | |||| |||||||| ||  |||||| |||||||||||||||| |||||| |  |    
T  4569538 cgtgacacgattttgctcggatttgaaca--aaatataagcattctttgacccatttgttgagtaagcttggtgaatctcatggaaaccaaaggagggaa 4569635  T
Q  135 cttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-ggaa 233  Q
    |||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || | ||| ||||||||  ||||||| |||||||| ||||    
T  4569636 cttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtaaatcttggagaatcaaaagagggggctcttgggaa 4569734  T
Q  234 attggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |  ||    ||||| ||||||| || ||||| |||| || ||||||||| |||||||||| |||||    
T  4569735 aagggggtgtgcctattgggga-agattcatggggttgggaaacacatgagtggagagtcttttgt 4569799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 41819987 - 41819842
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-ggaaattggtcgatgccttttg 251  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| || |||||| ||||||| |||||||| |||||  ||| | |||||||||    
T  41819987 actaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttagagaaccaaaagagggggctcttgggaaaagggttggtgccttttg 41819888  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    || |||  ||||| |||| || ||||||||| ||||||| ||||||||    
T  41819887 ggaaga--ttcatggggttgggaaacacatgagtggagactcatttgt 41819842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 2020187 - 2020229
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  2020187 cttgttgaagctaatttcttataaccgttttgtatttctttgt 2020229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 8166628 - 8166535
Alignment:
Q  336 ttcatggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||| ||| |||   |||||||||| || ||| |||| |||  ||||||||| |||| |||||||||| ||||||||||||||||    
T  8166628 ttcatggaagagattgataaatgagtagaaattaggtttgttcttggagagtttgttgaagttaatatcttataacctttttgtatctctttgt 8166535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 292
Target Start/End: Original strand, 47303954 - 47304093
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt-ggaaattggtcgatgccttttg 251  Q
    |||||| ||||  |||||||||||||| ||||||   || | || ||||| ||||||||| ||||||| |||||||| |||||  ||| | |||||||||    
T  47303954 actaaatgttgaaggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgggaaaagggttggtgccttttg 47304053  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagt 292  Q
    |||| || ||||| |||| || ||||||||| |||||||||    
T  47304054 ggga-agattcatggggttgggaaacacatgagtggagagt 47304093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 45095142 - 45095253
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgtttt 417  Q
    |||||||||||| | || ||||| |  |||| || ||||||||||||||||| |  ||| |||   ||||||||  ||||||||||||| ||||| ||||    
T  45095142 aaatcattgagtgtcttgttcattggtgagattgggaaaatggtagaaattagggttgttctttgtgaacttgtcaaagctaatttcttgtaaccctttt 45095241  T
Q  418 gtatctctttgt 429  Q
    ||||||||||||    
T  45095242 gtatctctttgt 45095253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 36796044 - 36796142
Alignment:
Q  88 catttgttaagagagcttgtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaa 186  Q
    |||||||| | ||| |||| ||||||||||||||  ||||||    |||||||||||||||| |||||||||||||  ||||||| | |||| ||||||    
T  36796044 catttgttgaaagaacttgagaatctcatggaaatcaaaggagataacttttagggaacttagaaactaaaggttgaaggtctttagatgaggttcaaa 36796142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 293 - 428
Target Start/End: Complemental strand, 1314021 - 1313884
Alignment:
Q  293 catttgtaaacatttttggtaagtgaaatcattgagtctatttttcatg-gaagagactgagaaaatggtagaaattaagtat-gtccttgaagaacttg 390  Q
    ||||||||||||  || ||| |||||||| ||||||||| || ||| || ||||||| |||||||| |||| |||||| || | || |||| ||| ||||    
T  1314021 catttgtaaacaccttgggtgagtgaaattattgagtctcttattcttgagaagagattgagaaaagggtaaaaattatgttttgttcttggagagcttg 1313922  T
Q  391 ttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    || |||||||||||||  || | |||||||| ||||||    
T  1313921 ttaaagctaatttcttgcaagccttttgtatatctttg 1313884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 5236579 - 5236534
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  5236579 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 5236534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 7762310 - 7762355
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||    
T  7762310 gaacttgttgaagctaatttcttgtaactcttttgtatctctttgt 7762355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 20937676 - 20937745
Alignment:
Q  359 ggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    ||||||||||| || |||  ||| ||| |||||||||| ||||||||| ||||| |||||||||||||||    
T  20937676 ggtagaaattatgtttgtttttggagagcttgttgaagttaatttcttgtaacccttttgtatctctttg 20937745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 426
Target Start/End: Complemental strand, 26323236 - 26323155
Alignment:
Q  345 gagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctt 426  Q
    |||| |||||||| |||| |||||| || |||  |||||||  ||||||||||||||||||| ||||| |||||||| ||||    
T  26323236 gagattgagaaaagggtaaaaattaggtttgtttttgaagagtttgttgaagctaatttcttgtaacctttttgtatatctt 26323155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 29810913 - 29810958
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  29810913 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 29810958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 46860479 - 46860564
Alignment:
Q  345 gagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||| ||||||||||| ||||||||| || ||| |||   || |||||||||||||||||||| |||||  |||||||||||||||    
T  46860479 gagattgagaaaatgggtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgt 46860564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 421
Target Start/End: Complemental strand, 3148157 - 3148077
Alignment:
Q  341 ggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtat 421  Q
    |||||||| |||||||  | ||||||||| || | | |||||||| |||||||||||||||||||| ||||| | ||||||    
T  3148157 ggaagagattgagaaatggatagaaattaggtttcttcttgaagagcttgttgaagctaatttcttgtaaccttattgtat 3148077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 24635277 - 24635345
Alignment:
Q  359 ggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctcttt 427  Q
    |||||||||||||| ||| |||| |||  |||||||||||||||| || ||||  ||||||||||||||    
T  24635277 ggtagaaattaagtttgttcttggagagtttgttgaagctaattttttgtaactattttgtatctcttt 24635345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 35138896 - 35138784
Alignment:
Q  318 aaatcattgagtctatttttcatggaa-gagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || ||||||||| |||| |||||||  ||||||||||| || ||| ||||  ||  ||||||||| |||||||||  |||  |||    
T  35138896 aaatcattgagtgtcttgttcatggaaagagattgagaaatgggtagaaattatgtttgttcttggtgagtttgttgaagttaatttcttgcaactcttt 35138797  T
Q  417 tgtatctctttgt 429  Q
    |||||||||||||    
T  35138796 tgtatctctttgt 35138784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 25491295 - 25491229
Alignment:
Q  83 tgacacatttgttaagagagcttgt-gaatctcatggaaactaaaggatgagacttttagggaactta 149  Q
    |||| |||||||| ||||||||||  |||||||||| |||||||| |||| |||||||||||||||||    
T  25491295 tgacccatttgttgagagagcttggcgaatctcatg-aaactaaaagatgggacttttagggaactta 25491229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 5434462 - 5434355
Alignment:
Q  34 atcgtgacacgattttgcttgaatttgaacactatatataagcatcatctgacacatttgttaagagagcttg-tgaatctcatggaaactaaaggatga 132  Q
    |||||||||| ||||||||| ||| ||||||||| |||  |||||||| || | |||||||| ||  |||||| |||||||||||||||  |||||| |     
T  5434462 atcgtgacacaattttgctttaatatgaacactacata--agcatcatttggctcatttgttgagtaagcttggtgaatctcatggaaatcaaaggaggg 5434365  T
Q  133 gacttttagg 142  Q
     |||||||||    
T  5434364 aacttttagg 5434355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 30236173 - 30236215
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  30236173 cttgttgaagctaatttcttgtaacctatttgtatctctttgt 30236215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 46173405 - 46173447
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  46173405 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 46173447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 1683450 - 1683543
Alignment:
Q  314 agtgaaatcattgagtctatttttcatggaag-agactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttctt 406  Q
    |||||| |||| |||||| || |||||||||  ||| |||||||||||||||||||||||  || |||  ||| ||| |||| |||||||||||    
T  1683450 agtgaagtcatcgagtctcttgttcatggaaatagattgagaaaatggtagaaattaagttcgttcttcgagagcttattgatgctaatttctt 1683543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 7764509 - 7764554
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||| ||||||||||||| ||||  ||||||||||||||||    
T  7764509 gaacttgttaaagctaatttcttgtaactcttttgtatctctttgt 7764554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 19684012 - 19683967
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  19684012 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttgt 19683967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 29813108 - 29813153
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||| ||||||||||    
T  29813108 gaacttgttgaagctaatttcttgtaacccatttgcatctctttgt 29813153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 34795454 - 34795491
Alignment:
Q  34 atcgtgacacgattttgcttgaatttgaacactatata 71  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  34795454 atcgtgacacgattttgcctgaatttgaacagtatata 34795491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 37408503 - 37408548
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  37408503 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttgt 37408548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 44700597 - 44700556
Alignment:
Q  388 ttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||| |||||  |||||||||||||||    
T  44700597 ttgttgaagctaatttcttgtaacctatttgtatctctttgt 44700556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 51398859 - 51398904
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| ||||   |||||||||||||||    
T  51398859 gaacttgttgaagctaatttcttgtaactcatttgtatctctttgt 51398904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 5258267 - 5258223
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||    
T  5258267 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttg 5258223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 5260446 - 5260402
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||    
T  5260446 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttg 5260402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 25491114 - 25491046
Alignment:
Q  361 tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||| || ||| |||  ||| |||||||||||| ||||||||||  | ||||||||||||||||    
T  25491114 tagaaattaggtttgttctttgagagcttgttgaagctgatttcttatactccttttgtatctctttgt 25491046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 26324025 - 26323953
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtga 178  Q
    ||||||||||||||||| |||||| || ||||||| |  | ||| | ||||||||||| ||||| ||||||||    
T  26324025 gtgaatctcatggaaaccaaaggaggaaacttttaagatatttagatactaaaggttgagggtcattgggtga 26323953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 40735361 - 40735473
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || ||||| |  |||| ||||||||||| ||||||||| |  ||| |||   || ||||||||||||||||| || |||||  ||    
T  40735361 aaatcattgagtgtcttgttcattggtgagattgagaaaatgggtagaaattagggttgttctttgtgagcttgttgaagctaatttattgtaaccagtt 40735460  T
Q  417 tgtatctctttgt 429  Q
    |||||||||||||    
T  40735461 tgtatctctttgt 40735473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 304
Target Start/End: Complemental strand, 2973476 - 2973254
Alignment:
Q  83 tgacacatttgttaagagagcttg-tgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagat 181  Q
    |||| |||||||||||||| |||| |||||||||||||||| |||||| |  ||||||||||    || | |||||||||||  |||||||||||||| |    
T  2973476 tgacccatttgttaagagaccttggtgaatctcatggaaaccaaaggagggaacttttagggtttgtagatactaaaggttgaaggtctttgggtgaggt 2973377  T
Q  182 tcaaattgtccaaatatgaattttggagaactaaaagagagggctcttg-gaaattggtcgatgccttttggggagaggttcattgggtaggaaaacaca 280  Q
    |||||   || | || ||||| ||||||||| ||||||| ||||||||| ||||  ||| | ||| |||| |||| || ||||| |||| || |||||||    
T  2973376 tcaaagcttcaagatgtgaatcttggagaaccaaaagagggggctcttgtgaaaagggttggtgcttttttggga-agattcatggggttgggaaacaca 2973278  T
Q  281 tgggtggagagtcatttgtaaaca 304  Q
    ||  || |||||||||||| ||||    
T  2973277 tgaatgcagagtcatttgtgaaca 2973254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 299
Target Start/End: Complemental strand, 3809258 - 3809028
Alignment:
Q  70 tataagcatcatctgacacatttgttaagagagcttg-tgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggt 168  Q
    |||||||||  | |||| |||||||| ||  |||||| |||||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||    
T  3809258 tataagcattctttgacccatttgttgagcaagcttggtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggt 3809160  T
Q  169 ctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaaga-gagggctcttg-gaaattggtcgatgccttttggggagaggttcattg 266  Q
    ||||||||||| ||||||   || | || ||||| ||||||||| |||||| | ||||||||| ||||  ||| | | |||||||| || || ||||| |    
T  3809159 ctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaagaggggggctcttgtgaaaagggttggttccttttggaga-agattcatgg 3809061  T
Q  267 ggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||| || ||||||||| ||||||||||||||||    
T  3809060 ggttgggaaacacatgagtggagagtcatttgt 3809028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 5043284 - 5043475
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||  |||||| |  ||||||||||   ||| | ||||||| ||| ||||||||||||||| ||||||   || | ||  |||| ||    
T  5043284 gtgaatctcatggaaatcaaaggagggaacttttagggtt-ttagatactaaagattgagggtctttgggtgaggttcaaagcttcaagatgagaatctt 5043382  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| |||||||||||||||| |||||  ||| | ||||||||||| |||  ||||| |||| || ||||||||| |||||||||| |||||    
T  5043383 ggagaaccaaaagagagggctcttgggaaaagggttggtgccttttgggaaga--ttcatggggttgggaaacacatgagtggagagtcttttgt 5043475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 297
Target Start/End: Original strand, 21593322 - 21593512
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| ||||| |   ||||||||||   ||| | |||||| |||| ||||||||||||||| ||||||   |  | || ||||| ||    
T  21593322 gtgaatctcatggaaaccaaaggttagaacttttagggtt-ttagatactaaatgttgagggtctttgggtgaggttcaaagatttaagatgtgaatctt 21593420  T
Q  206 ggagaactaaaagagagggctcttgga-aattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcattt 297  Q
    ||||||| ||||||| ||||||||||  ||  ||| | |||||||||| || || ||||| |||| |||||||||||| ||||||||||||||    
T  21593421 ggagaaccaaaagagggggctcttggggaaagggttggtgccttttggaga-agattcatggggttggaaaacacatgagtggagagtcattt 21593512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 25072770 - 25072921
Alignment:
Q  34 atcgtgacacgattttgcttgaatttgaacactatatataagcatcatctgacacatttgttaagagagcttg-tgaatctcatggaaactaaagga-tg 131  Q
    ||||||||| ||| |||| || ||||||||||| ||||  |||||| | |||| |||||||| ||  |||||| |||||||||||||||  |||| | ||    
T  25072770 atcgtgacatgatattgcctggatttgaacactgtata--agcatcctttgactcatttgttgagtaagcttgatgaatctcatggaaatcaaagaagtg 25072867  T
Q  132 agacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaa 186  Q
    | |||||||||| | ||| | ||||||||||| ||||||||||||||| ||||||    
T  25072868 a-acttttagggtatttagatactaaaggttgagggtctttgggtgaggttcaaa 25072921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 5406389 - 5406278
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgtttt 417  Q
    |||||||||||| | || ||||| |  |||| || ||||||||||||||||| |  ||| |||   ||||||||  ||||||||||||| ||||| ||||    
T  5406389 aaatcattgagtgtcttgttcattggtgagattgggaaaatggtagaaattagggttgttctttgtgaacttgtcaaagctaatttcttgtaaccctttt 5406290  T
Q  418 gtatctctttgt 429  Q
    ||||||||||||    
T  5406289 gtatctctttgt 5406278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 5410714 - 5410603
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgtttt 417  Q
    |||||||||||| | || ||||| |  |||| || ||||||||||||||||| |  ||| |||   ||||||||  ||||||||||||| ||||| ||||    
T  5410714 aaatcattgagtgtcttgttcattggtgagattgggaaaatggtagaaattagggttgttctttgtgaacttgtcaaagctaatttcttgtaaccctttt 5410615  T
Q  418 gtatctctttgt 429  Q
    ||||||||||||    
T  5410614 gtatctctttgt 5410603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 4045401 - 4045513
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatggtagaaattaag-tatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || || || | ||||| || ||||||||||||||||| | | ||| ||| | || |||||||||||||||||||| ||| | |||    
T  4045401 aaatcattgagtgtcttgtttattggagagattgggaaaatggtagaaattagggtttgttctttatgagcttgttgaagctaatttcttgtaatcattt 4045500  T
Q  417 tgtatctctttgt 429  Q
    | |||||||||||    
T  4045501 tatatctctttgt 4045513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 9183221 - 9183109
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatgg-tagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttt 416  Q
    |||||||||||| | || ||||| |  |||| ||||||||||| ||||||||| |  ||| |||   ||| ||||||||||||||||||| |||||  ||    
T  9183221 aaatcattgagtgtcttgttcattggtgagattgagaaaatgggtagaaattagggttgttctttgtgaatttgttgaagctaatttcttgtaacccatt 9183122  T
Q  417 tgtatctctttgt 429  Q
    |||||||||||||    
T  9183121 tgtatctctttgt 9183109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 31404829 - 31404753
Alignment:
Q  353 gaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||| |  ||| |||   ||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  31404829 gaaaatggtagaaattagggttgttctttgtgaacttgtcaaagctaatttcttgtaacccttttgtatctctttgt 31404753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 5413583 - 5413472
Alignment:
Q  318 aaatcattgagtctatttttcatggaagagactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgtttt 417  Q
    |||||||||||| | || ||||| |  |||| || ||||| ||||||||||| |  ||| |||   ||||||||  ||||||||||||| ||||| ||||    
T  5413583 aaatcattgagtgtcttgttcattggtgagattgggaaaaaggtagaaattagggttgttctttgcgaacttgtcaaagctaatttcttgtaaccctttt 5413484  T
Q  418 gtatctctttgt 429  Q
    ||||||||||||    
T  5413483 gtatctctttgt 5413472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 603208 - 603166
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  603208 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 603166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 2973087 - 2973017
Alignment:
Q  359 ggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||| || ||| |||   || |||||||||||||||||||| |||||  |||||||||||||||    
T  2973087 ggtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgt 2973017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 17758071 - 17758113
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  17758071 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 17758113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 21588979 - 21589021
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  21588979 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 21589021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 429
Target Start/End: Original strand, 21593712 - 21593754
Alignment:
Q  387 cttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||||||| |||||  |||||||||||||||    
T  21593712 cttgttgaagctaatttcttgtaacccatttgtatctctttgt 21593754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 5043632 - 5043717
Alignment:
Q  345 gagactgagaaaatg-gtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||| |||||||||| |||||||||| || ||| |||   || |||||||||||||||||||| ||||   |||||||||||||||    
T  5043632 gagattgagaaaatgagtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgt 5043717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 30834659 - 30834615
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||    
T  30834659 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttg 30834615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 429
Target Start/End: Complemental strand, 490518 - 490399
Alignment:
Q  314 agtgaaatcattgagtctatttttcatggaag----agactgagaaaatggtagaaattaagtatgtccttgaagaacttgttgaagctaatttcttata 409  Q
    |||||| ||||||||||| || |||||| |||    ||| ||||||||| ||||||||||||| ||| |||| ||| |||||||||||||||||||| ||    
T  490518 agtgaactcattgagtctcttgttcatgaaaggaggagattgagaaaatcgtagaaattaagtttgttcttggagagcttgttgaagctaatttcttgta 490419  T
Q  410 accgttttgtatctctttgt 429  Q
    ||  |||||||| |||||||    
T  490418 actcttttgtatatctttgt 490399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 491025 - 490834
Alignment:
Q  37 gtgacacgattttgcttgaatttgaacactatatataagcatcatctgacacatttgttaagagagctt-gtgaatctcatggaaactaaaggatgagac 135  Q
    |||||||||||||||||| || |||||||||  |||||||||| | |||| |||||||| ||  ||||| ||||||||||||  ||| |||||| |   |    
T  491025 gtgacacgattttgcttggatctgaacacta--tataagcatcctttgacccatttgttgagcaagcttggtgaatctcatgagaaccaaaggagggagc 490928  T
Q  136 ttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctctt 229  Q
    |||||||| |  || | ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||||||| |||| || ||||||||    
T  490927 ttttagggtatgtagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaaccaaaaaagggggctctt 490834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 434578 - 434623
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  434578 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttgt 434623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 429
Target Start/End: Complemental strand, 27659 - 27521
Alignment:
Q  293 catttgtaaacatttttggtaagtgaaatcattgagtctatttttc-atggaagagactgagaaaatggtagaaattaagtat-gtccttgaagaacttg 390  Q
    ||||||||||||  || | | ||||||||| |||||||| || ||| | |||||||| || |||||  |||||||||| |||| || |||||||| ||||    
T  27659 catttgtaaacaccttggatgagtgaaatctttgagtctcttgttctagggaagagattgtgaaaagagtagaaattatgtattgttcttgaagagcttg 27560  T
Q  391 ttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    |||||||||||||||| ||||   |||||||||||||||    
T  27559 ttgaagctaatttcttgtaactcatttgtatctctttgt 27521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 299
Target Start/End: Complemental strand, 80795 - 80603
Alignment:
Q  106 gtgaatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaatttt 205  Q
    ||||||||||||||||| |||||| |  ||||||||||   ||| | |||| |||||| ||||||||||||||| ||||||   || | || ||||| ||    
T  80795 gtgaatctcatggaaaccaaaggagggaacttttagggtt-ttagatactagaggttgagggtctttgggtgaggttcaaagcttcaagatttgaatctt 80697  T
Q  206 ggagaactaaaagagagggctctt-ggaaattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    ||||||| ||||||| ||||||||  ||||  ||| | ||||||||||||| || ||||| |||| || ||||||||| | |||||||| |||||    
T  80696 ggagaaccaaaagagggggctcttatgaaaagggttggtgccttttgggga-agattcatggggttgggaaacacatgagcggagagtcttttgt 80603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 297
Target Start/End: Original strand, 11217 - 11404
Alignment:
Q  109 aatctcatggaaactaaaggatgagacttttagggaacttaaaaactaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttgga 208  Q
    |||||||||||||| |||||| |  ||||||||||   ||| | ||||||||||| ||||||||||||||| ||||||   || | || ||||| |||||    
T  11217 aatctcatggaaaccaaaggagggaacttttagggtt-ttagatactaaaggttgagggtctttgggtgaggttcaaagcttcaagatgtgaatcttgga 11315  T
Q  209 gaactaaaagagagggctcttgga-aattggtcgatgccttttggggagaggttcattgggtaggaaaacacatgggtggagagtcattt 297  Q
    |||| ||||||  ||||||||||  ||  ||| | |||||||||| || || ||||| |||| || ||||||||| ||||||||||||||    
T  11316 gaaccaaaagatggggctcttggggaaagggttggtgccttttggaga-agattcatggggttgggaaacacatgagtggagagtcattt 11404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 18467 - 18321
Alignment:
Q  153 actaaaggttgggggtctttgggtgagattcaaattgtccaaatatgaattttggagaactaaaagagagggctcttg-gaaattggtcgatgccttttg 251  Q
    ||||||||||| ||||||||||||||| ||||||   || | || ||||| ||||||||| ||||||| ||||||||| ||||  ||| | |||||||||    
T  18467 actaaaggttgcgggtctttgggtgaggttcaaagcttcaagatgtgaatcttggagaacaaaaagagggggctcttgtgaaaagggttggtgccttttg 18368  T
Q  252 gggagaggttcattgggtaggaaaacacatgggtggagagtcatttgt 299  Q
    |||  || |||||  |||  ||||||||||| ||||||||| ||||||    
T  18367 ggggaagattcatgaggt-tgaaaacacatgagtggagagttatttgt 18321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 20538 - 20493
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||    
T  20538 gaacttgttgaagctaatttcttgtaacccatttgtatctctttgt 20493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Original strand, 25102 - 25143
Alignment:
Q  388 ttgttgaagctaatttcttataaccgttttgtatctctttgt 429  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||    
T  25102 ttgttgaaggtaatttcttgtaacctttttgtatctctttgt 25143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 961 - 1005
Alignment:
Q  384 gaacttgttgaagctaatttcttataaccgttttgtatctctttg 428  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||    
T  961 gaacttgtcaaagctaatttcttgtaacccttttgtatctctttg 1005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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