View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19965_low_6 (Length: 501)

Name: NF19965_low_6
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19965_low_6
NF19965_low_6
[»] chr4 (5 HSPs)
chr4 (13-492)||(4115030-4115498)
chr4 (312-436)||(15131508-15131634)
chr4 (313-444)||(53999981-54000114)
chr4 (311-366)||(25234299-25234354)
chr4 (307-356)||(22050950-22050999)
[»] chr3 (5 HSPs)
chr3 (293-436)||(39341215-39341360)
chr3 (292-391)||(54028612-54028711)
chr3 (299-355)||(54437905-54437961)
chr3 (310-401)||(7938118-7938211)
chr3 (292-340)||(46258510-46258558)
[»] chr6 (4 HSPs)
chr6 (310-436)||(32047190-32047318)
chr6 (384-436)||(23577167-23577219)
chr6 (383-438)||(32342614-32342669)
chr6 (319-367)||(26236596-26236644)
[»] chr5 (7 HSPs)
chr5 (293-438)||(7113528-7113675)
chr5 (332-434)||(39730261-39730363)
chr5 (295-436)||(40483698-40483840)
chr5 (383-441)||(2243322-2243380)
chr5 (383-438)||(14138559-14138614)
chr5 (305-358)||(5205286-5205339)
chr5 (306-367)||(7215224-7215285)
[»] chr2 (4 HSPs)
chr2 (298-438)||(16576262-16576403)
chr2 (337-430)||(2909844-2909939)
chr2 (383-436)||(38576943-38576996)
chr2 (292-351)||(13712671-13712730)
[»] chr7 (7 HSPs)
chr7 (293-444)||(34891541-34891694)
chr7 (293-433)||(23944095-23944236)
chr7 (383-438)||(32138892-32138947)
chr7 (326-366)||(27651288-27651328)
chr7 (287-420)||(42012833-42012967)
chr7 (384-438)||(31152738-31152792)
chr7 (292-344)||(31152615-31152667)
[»] chr1 (5 HSPs)
chr1 (384-438)||(10775177-10775231)
chr1 (383-438)||(46080985-46081040)
chr1 (385-438)||(52432675-52432728)
chr1 (383-431)||(3231979-3232027)
chr1 (293-357)||(46081052-46081116)
[»] chr8 (5 HSPs)
chr8 (383-441)||(35574646-35574704)
chr8 (383-444)||(32166641-32166702)
chr8 (385-438)||(6630547-6630600)
chr8 (291-360)||(32166548-32166616)
chr8 (313-366)||(35574743-35574796)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 4115030 - 4115498
Alignment:
Q  13 tgaatataacgtatagagagcacacgtctaatgatgctttacacattttggataaaattgcaaagatcgagcaaaattttagcaggaatccttgcaatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  4115030 tgaatataacgtatagagagcacacgtctaatgatgctttagacattttggataaaattgcaataatcgagcaaaattttagcaggaatccttgcaatca 4115129  T
Q  113 ggcaacttgagactcataaaaaatcggatatgaccaaattttaagtttaagattagatttaagattcaacatagttgatggtgtgtcgttgccgttgacc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||| ||||||||| ||||||||||      
T  4115130 ggcaacttgagactcataaaaaatcggatatgaccaaattttaagtttaagattg------------aacatagttggtggtgtgtcattgccgttgatg 4115217  T
Q  213 tgtcaagtgtgagtaaatgactttcatgttagatataaatgaacatgaacatcatataagtaaggtgactacatatttttggtgaggcctatgttacccc 312  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  4115218 tgtcaagtgtgagtaaataactttcatgttagatataaacgaacatgaacatcatataagtaaggtgactacatatttttgttgagacctatattacccc 4115317  T
Q  313 ttgatgaatta-agggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatcatgttgaatgaatgagatggagaagttt 411  Q
    |||||||||||  |||| |  |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  4115318 ttgatgaattagggggtgaactacccctaatgataaataagattcaattttggaacaagataaacggagatcatgttgaatgaatgagatggagaagttt 4115417  T
Q  412 catgttcttaagatgaaaatggtaattaatagtnnnnnnnnnnnnccatatcggtgagctagatttttctatgaatgtgat 492  Q
    |||||||||||||| ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||    
T  4115418 catgttcttaagataaaaatggtaattaatagtaaaaagaaaaaaccatatcggtgagctagatttttctatgaatgtgat 4115498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 436
Target Start/End: Original strand, 15131508 - 15131634
Alignment:
Q  312 cttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagt 409  Q
    ||||||||||||||||| |||||| |||||| | |||||||||| ||||||  ||  | |||||  |||||  |||| |||||||| |||||| |||| |    
T  15131508 cttgatgaattaagggtgatttactcctaataagaaataagatttaatttttaaacgaagtaaatagagatcacatgctgaatgaaggagatgaagaaat 15131607  T
Q  410 ttcatgttcttaagatgaaaatggtaa 436  Q
    || |||||||| |||| ||||||||||    
T  15131608 ttgatgttcttgagataaaaatggtaa 15131634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 444
Target Start/End: Original strand, 53999981 - 54000114
Alignment:
Q  313 ttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagtt 410  Q
    |||||||||||  ||||||||| |||||| ||||||||||||| ||||||  ||  | ||||| ||||||  |||||||||| |||| |||| |    ||    
T  53999981 ttgatgaattagaggtaatttagccctaaagataaataagatttaattttaaaacgaagtaaatggagatcacatgttgaataaatgtgatgaatttttt 54000080  T
Q  411 tcatgttcttaagatgaaaatggtaattaatagt 444  Q
    | |||||||| ||||||||||||||||| |||||    
T  54000081 tgatgttcttgagatgaaaatggtaattgatagt 54000114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 25234299 - 25234354
Alignment:
Q  311 ccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaa 366  Q
    ||||||||||||| |||||||||||| || |||| ||||| ||||| |||||||||    
T  25234299 ccttgatgaattacgggtaatttaccgctcatgacaaatacgattcgattttggaa 25234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 22050999 - 22050950
Alignment:
Q  307 taccccttgatgaattaagggtaatttacccctaatgataaataagattc 356  Q
    |||||||| |||||||  ||||||||||||| |||||||||||| |||||    
T  22050999 tacccctttatgaattgggggtaatttacccttaatgataaatatgattc 22050950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 293 - 436
Target Start/End: Complemental strand, 39341360 - 39341215
Alignment:
Q  293 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggaga--tcatgttga 390  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||  | ||||| |||||  |||||||||    
T  39341360 ggtgaggtctatgttaccctttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttga 39341261  T
Q  391 atgaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 436  Q
    ||||| |||||| | |||||| || |||||||||||||||||||||    
T  39341260 atgaaggagatgaaaaagtttgatattcttaagatgaaaatggtaa 39341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 292 - 391
Target Start/End: Complemental strand, 54028711 - 54028612
Alignment:
Q  292 tggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatcatgttgaa 391  Q
    ||||||||||||| |||||  || ||||||| ||||||||||| ||||||||||||||| ||||||||| || ||| | | | | |||||||||||||||    
T  54028711 tggtgaggcctatattaccatttcatgaattgagggtaatttatccctaatgataaatatgattcaattatgaaatgaaggagatggagatcatgttgaa 54028612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 54437961 - 54437905
Alignment:
Q  299 gcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagatt 355  Q
    ||||| ||||||||||| ||||||| |||||||||||| ||||||||||||| ||||    
T  54437961 gcctacgttaccccttgttgaattaggggtaatttacctctaatgataaatatgatt 54437905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 7938211 - 7938118
Alignment:
Q  310 cccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagat 401  Q
    |||||||||||||  | ||||||||||| |||||||||||||||||| ||| | ||  || | ||||||||||  ||||||||||||| |||||    
T  7938211 cccttgatgaattgcgtgtaatttacccttaatgataaataagattcgattctagagcaaagaaaacggagatcgcatgttgaatgaaggagat 7938118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 46258510 - 46258558
Alignment:
Q  292 tggtgaggcctatgttaccccttgatgaattaagggtaatttaccccta 340  Q
    ||||||| ||||  |||||||||||||||||  ||||||||||||||||    
T  46258510 tggtgagacctacattaccccttgatgaattgggggtaatttaccccta 46258558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 436
Target Start/End: Complemental strand, 32047318 - 32047190
Alignment:
Q  310 cccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatc--atgttgaatgaatgagatggagaa 407  Q
    ||||||||||||| ||| ||||||||| |||||||||| || ||||||||| |||||| | | | ||| | |||  ||||||||||||||||||| ||||    
T  32047318 cccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaatgagatgaagaa 32047219  T
Q  408 gtttcatgttcttaagatgaaaatggtaa 436  Q
    |||| |||||||| |||||||||||||||    
T  32047218 gtttgatgttcttgagatgaaaatggtaa 32047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 23577219 - 23577167
Alignment:
Q  384 atgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 436  Q
    |||||||||||| ||||||||||||| | ||||| || |||||||||||||||    
T  23577219 atgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaa 23577167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 32342669 - 32342614
Alignment:
Q  383 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
    |||||||||||||||||||| | |||||| ||||| || ||||||||||| |||||    
T  32342669 catgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataatt 32342614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 26236596 - 26236644
Alignment:
Q  319 aattaagggtaatttacccctaatgataaataagattcaattttggaat 367  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||| ||||    
T  26236596 aattacgggtaatttatctctaatgataaatatgattcaattttagaat 26236644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 438
Target Start/End: Original strand, 7113528 - 7113675
Alignment:
Q  293 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttga 390  Q
    |||||| | ||||||||| |||| ||||||| | ||||||||| ||||||||||||||||||| ||||||||||  | ||||| | | ||  || |||||    
T  7113528 ggtgagacatatgttacctcttgttgaattaggtgtaatttactcctaatgataaataagatttaattttggaacgatgtaaatgaaaatcacacgttga 7113627  T
Q  391 atgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
    |||||||||||| |||||||| || ||||| ||||||||||| |||||    
T  7113628 atgaatgagatgaagaagtttaatattcttgagatgaaaatgataatt 7113675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 434
Target Start/End: Original strand, 39730261 - 39730363
Alignment:
Q  332 ttacccctaatgataaataagattcaattttggaataaggtaaacggagatcatgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaat 431  Q
    ||||||||||| ||||||||||||||||||| ||| || ||||| | |||||||||| |||||| |||||| | |||||| |||||||| ||||||||||    
T  39730261 ttacccctaatcataaataagattcaattttagaacaaagtaaatgaagatcatgttaaatgaaagagatgaaaaagtttgatgttcttgagatgaaaat 39730360  T
Q  432 ggt 434  Q
    |||    
T  39730361 ggt 39730363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 436
Target Start/End: Complemental strand, 40483840 - 40483698
Alignment:
Q  295 tgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaat 392  Q
    |||||||||||||| | ||||||||||| ||||||| ||||||| |||||||| || ||||| |||||||||  |   | | | ||||  ||||||||||    
T  40483840 tgaggcctatgttatctcttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaat 40483741  T
Q  393 gaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 436  Q
    || ||||||| |||||||| ||||| || |||||||||| ||||    
T  40483740 gagtgagatgaagaagtttgatgtt-tttagatgaaaatagtaa 40483698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 2243322 - 2243380
Alignment:
Q  383 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaat 441  Q
    ||||||||||||| || ||| |||||||| |||||||| ||||||||||||||| ||||    
T  2243322 catgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaat 2243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 14138614 - 14138559
Alignment:
Q  383 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
    ||||||||||||| ||||||   |||||| || |||||||||||||||||||||||    
T  14138614 catgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaatt 14138559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Original strand, 5205286 - 5205339
Alignment:
Q  305 gttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaa 358  Q
    |||||||||||||||||| | | ||||||| || ||||||||| ||||||||||    
T  5205286 gttaccccttgatgaattgatgataatttatccataatgataagtaagattcaa 5205339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 7215224 - 7215285
Alignment:
Q  306 ttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaat 367  Q
    ||||| |||| ||||||  ||||||||||||  |||||||||||| ||||||||||| ||||    
T  7215224 ttacctcttgttgaattcggggtaatttaccgttaatgataaatatgattcaattttagaat 7215285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 438
Target Start/End: Complemental strand, 16576403 - 16576262
Alignment:
Q  298 ggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatca--tgttgaatgaa 395  Q
    |||||| ||||||||||||||||||  || |||||||||||||||||||| || ||||| ||| |||||  |   | | ||||||||  |||||||||||    
T  16576403 ggcctacgttaccccttgatgaattg-ggttaatttacccctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 16576305  T
Q  396 tgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
     |||||| |||||||| |||||||| ||| |||||||||||||    
T  16576304 ggagatgaagaagtttgatgttcttgagaggaaaatggtaatt 16576262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 2909939 - 2909844
Alignment:
Q  337 cctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaa 430  Q
    |||||||||||||||||||||||||| |||| | ||||| | ||||  ||||||||||||| |||||| |||||||| ||||| |||| |||||||    
T  2909939 cctaatgataaataagattcaattttagaatgaagtaaatgtagattacatgttgaatgaaggagatgaagaagtttgatgtttttaaaatgaaaa 2909844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 436
Target Start/End: Original strand, 38576943 - 38576996
Alignment:
Q  383 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 436  Q
    ||||||||||||| |||||| |||| ||| |||||||| |||||||||||||||    
T  38576943 catgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaa 38576996  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 13712671 - 13712730
Alignment:
Q  292 tggtgaggcctatgttaccccttgatgaattaaggg-taatttacccctaatgataaataa 351  Q
    |||||||||||||||||||  ||||| ||| ||||| |||||||| |||||||||||||||    
T  13712671 tggtgaggcctatgttacct-ttgataaataaaggggtaatttacacctaatgataaataa 13712730  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 444
Target Start/End: Complemental strand, 34891694 - 34891541
Alignment:
Q  293 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttga 390  Q
    ||||||| ||||||||||| || |||||||| |||||||||||    ||| | |||||||||||||||||  ||  | | ||| ||||||  ||||||||    
T  34891694 ggtgaggtctatgttaccctttaatgaattaggggtaatttactatcaataacaaataagattcaattttataacgaagcaaatggagatcacatgttga 34891595  T
Q  391 atgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaatagt 444  Q
    ||||| |||||| |||| ||| |||||||| |||| |||||| ||| |||||||    
T  34891594 atgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagt 34891541  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 433
Target Start/End: Complemental strand, 23944236 - 23944095
Alignment:
Q  293 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttga 390  Q
    |||||||||||  ||| |||||||||||||  || | | |||||||| ||||||| || ||||| ||| |||||||| | | | ||| ||  ||||||||    
T  23944236 ggtgaggcctacattatcccttgatgaatttgggatga-ttacccctgatgataagtatgattcgattctggaataaaggagatggaaatcacatgttga 23944138  T
Q  391 atgaatgagatggagaagtttcatgttcttaagatgaaaatgg 433  Q
    ||||| |||| | |||||||| |||||||||||||||||||||    
T  23944137 atgaaagagaagaagaagtttgatgttcttaagatgaaaatgg 23944095  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 32138892 - 32138947
Alignment:
Q  383 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
    ||||||||| ||| |||||| |||| ||| ||||||||||||||||||||||||||    
T  32138892 catgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaatt 32138947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 27651288 - 27651328
Alignment:
Q  326 ggtaatttacccctaatgataaataagattcaattttggaa 366  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  27651288 ggtaatttatccctaatgaaaaataagattcaattttggaa 27651328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 420
Target Start/End: Complemental strand, 42012967 - 42012833
Alignment:
Q  287 atttttggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--ca 384  Q
    ||||| ||||||||||| ||||||| || |||||| |  | ||||||||  |||||||||||||||||| |||| | |||  | ||||| ||||||  ||    
T  42012967 attttgggtgaggcctacgttaccctttaatgaataagagataatttacttctaatgataaataagatttaattcttgaacgaagtaaatggagatcaca 42012868  T
Q  385 tgttgaatgaatgagatggagaagtttcatgttctt 420  Q
    |||||||| ||| ||||| | |||||| ||||||||    
T  42012867 tgttgaataaat-agatgaaaaagtttgatgttctt 42012833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 31152738 - 31152792
Alignment:
Q  384 atgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
    |||||||||||| || ||| ||||| || ||||| ||||||||||||||||||||    
T  31152738 atgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaatt 31152792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 31152615 - 31152667
Alignment:
Q  292 tggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatga 344  Q
    |||||||||||| |||||||||| |||||||  |||||||| | |||||||||    
T  31152615 tggtgaggcctacgttaccccttcatgaattgggggtaattgatccctaatga 31152667  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 10775231 - 10775177
Alignment:
Q  384 atgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
    |||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaatt 10775177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 46081040 - 46080985
Alignment:
Q  383 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
    |||||||| |||| |||||| |||||||| |||||||| |||||||||||||||||    
T  46081040 catgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaatt 46080985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 52432728 - 52432675
Alignment:
Q  385 tgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
    |||| |||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  52432728 tgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaatt 52432675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 3232027 - 3231979
Alignment:
Q  383 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaat 431  Q
    |||||||||||||||| ||| ||||||||  ||||||| ||||||||||    
T  3232027 catgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaat 3231979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 46081116 - 46081052
Alignment:
Q  293 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattca 357  Q
    ||||||| ||| ||||||| ||||||||||  ||||||||||| | ||||||||| || ||||||    
T  46081116 ggtgaggtctacgttaccctttgatgaattgggggtaatttactcttaatgataagtacgattca 46081052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 35574646 - 35574704
Alignment:
Q  383 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaat 441  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||||| |||| ||||    
T  35574646 catgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaat 35574704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 32166641 - 32166702
Alignment:
Q  383 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaatagt 444  Q
    |||||||||| || |||||| |||||||| |||||||| ||||||||||| ||||| |||||    
T  32166641 catgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagt 32166702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 6630547 - 6630600
Alignment:
Q  385 tgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 438  Q
    |||| |||||| |||||| |||| ||| ||| ||||||||||||||||||||||    
T  6630547 tgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaatt 6630600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 32166548 - 32166616
Alignment:
Q  291 ttggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaatt 360  Q
    ||||| |||||||||||| || ||||||||||| |||||||||    ||||||||||| |||||||||||    
T  32166548 ttggtaaggcctatgttatcctttgatgaattaggggtaattt-gttctaatgataaaaaagattcaatt 32166616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 35574743 - 35574796
Alignment:
Q  313 ttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaa 366  Q
    |||||||||| ||||||||||||| ||||||| || || ||||| |||||||||    
T  35574743 ttgatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaa 35574796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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