View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_7 (Length: 468)
Name: NF19965_low_7
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 384
Target Start/End: Original strand, 10115043 - 10115396
Alignment:
| Q |
30 |
aacaggagagatatatagacatgaagacgtgaaatgagaatactttttgaataattaaaagtaactatctcctactagaaccgttgagtaccggagagaa |
129 |
Q |
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| T |
10115043 |
aacaggagagatatatagacatgaagacctgaaatgagaatactttttgaataattaaaagtaactatctcctactagaaccgttgagtactggagagaa |
10115142 |
T |
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| Q |
130 |
taatttgtcatggctctaaggtccacgacaagggcgacactaaaacgtatatatatgaaatgatgatagatatatctgttttgaactggaaatataaaag |
229 |
Q |
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| T |
10115143 |
taatttgtcatggctctaaggtccacgacaagggcaacactaaaacgtatatatatgaaatgatgatagatatatctgttttgaactggaaatataaaag |
10115242 |
T |
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| Q |
230 |
atattttcgtaagaataattttgatgaacagttagtgaaaaatattgtataccttcgatgaataataatccatcatttgtatgactttgaaggtagttat |
329 |
Q |
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| T |
10115243 |
atattttcgtaagaataattttgatgcacagttagtgaaaaatattgtataccttcaatgaataataatccatcatttgtatgactttgaaggtagttat |
10115342 |
T |
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| Q |
330 |
gagcaaaattaaatatatatcatgtcgatgcatgtatgaattaaaaagtgattgt |
384 |
Q |
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| T |
10115343 |
gagcaaaattaaatatatattatgtcgatgattgtatgaatt-aaaagtgattgt |
10115396 |
T |
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