View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_9 (Length: 449)
Name: NF19965_low_9
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 45305528 - 45305110
Alignment:
| Q |
8 |
ccaagaatatttctatatctaacaactactcccacttttccatttcaatccccttcatttattatatgtgttttttaacacagtgtttatagctagctaa |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305528 |
ccaaaaatatttctatatctaacaactactcccacttttccatttcaatccccttcatttattatatgtgttttttaacacagtgtttatagctagctaa |
45305429 |
T |
|
| Q |
108 |
gtaacttcattccttctactatttataataattagccttttagtgagaaaagccctagttgacaacatgtggatggtgggttacaatgaaggtggtgagt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305428 |
gtaacttcattccttctactatttataataattagccttttagtgagaaaagccctagttgacaacatgtggatggtgggttacaatgaaggtggtgagt |
45305329 |
T |
|
| Q |
208 |
tcaacatggctgattatccattcagtggaaggaaactaaggcctctcattccaagaccagtcccagtccctactacttctcctaacaacacttcaactat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305328 |
tcaacatggctgattatccattcagtggaaggaaactaaggcctctcattccaagaccagtcccagtccctactacttctcctaacaacacttcaactat |
45305229 |
T |
|
| Q |
308 |
aactccttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcagcagcaaggtatatactcttttctcttcttattt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305228 |
aactccttccttaaaccgcattcatggtggcaatgatttattttcacagtatcatcataatctgcagcagcaaggtatatactcttttctcttcttattt |
45305129 |
T |
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| Q |
408 |
acaattactatatgtatgt |
426 |
Q |
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||| ||||||||||||||| |
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| T |
45305128 |
acacttactatatgtatgt |
45305110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 83 - 430
Target Start/End: Complemental strand, 40005490 - 40005144
Alignment:
| Q |
83 |
taacacagtgtttatagctagctaagtaacttcattccttctactatttataataattagccttttagtgagaaaagccctagttgacaacatgtggatg |
182 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40005490 |
taacacagtgtttatagcta----agtaacttcattcgttctactatttataat---tagccttttagtgagaaaaggcctagttgacaacatgtggatg |
40005398 |
T |
|
| Q |
183 |
gtgggttacaatgaaggtggtgagttcaacatggctgattatccattcagtggaaggaaactaaggcctctcattccaagaccagtccca------gtcc |
276 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
40005397 |
gtgggttacagtgaaggtggtgagttcaacatggctgattatccattatgtggaaggaaactaaggcctctcatgtcaagaccagtcccaatcccagtcc |
40005298 |
T |
|
| Q |
277 |
ctactacttctcctaacaacacttcaactataactccttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcagca |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40005297 |
ctactacttctcctaacaacacttcaactataactccttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcagca |
40005198 |
T |
|
| Q |
377 |
gcaaggtatatactcttttctcttcttatttacaattactatatgtatgtatgt |
430 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
40005197 |
gcaaggtatatactcttttctcttcttatttacacttaccatatgtatgtatgt |
40005144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 83 - 430
Target Start/End: Original strand, 40220062 - 40220402
Alignment:
| Q |
83 |
taacacagtgtttatagctagctaagtaacttcattccttctactatttataataattagccttttagtgagaaaagccctagttgacaacatgtggatg |
182 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40220062 |
taacacagtgtttatagcta----agtaacttcattcgttctactatttataa---ttagccttttagtgagaaaaggcctagttgacaacatgtggatg |
40220154 |
T |
|
| Q |
183 |
gtgggttacaatgaaggtggtgagttcaacatggctgattatccattcagtggaaggaaactaaggcctctcattccaagaccagtcccagtccctacta |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
40220155 |
gtgggttacaatgaaggtggtgagttcaacatggctgattatccattctgtggaaggaaactaaggcctctcatgccaagaccagtcctagtccctacta |
40220254 |
T |
|
| Q |
283 |
cttctcctaacaacacttcaactataactccttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcagcagcaagg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40220255 |
cttctcctaacaacacttcaactataactccttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcggcagcaagg |
40220354 |
T |
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| Q |
383 |
tatatactcttttctcttcttatttacaattactatatgtatgtatgt |
430 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40220355 |
tatatactcttttctcttcttatttacacttactatatgtatgtatgt |
40220402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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