View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19966_high_3 (Length: 227)
Name: NF19966_high_3
Description: NF19966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19966_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 42551397 - 42551279
Alignment:
| Q |
13 |
cagacacgtatattggcacactctatcaaagaaacaaaaagaaattaacattaattgtgacctaagtatattgtgaaacctataaatattaaagagatac |
112 |
Q |
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| T |
42551397 |
cagacacgtatattggcacactctatcaaagaaacaaaaagaaattaacattaattgtgacctaagtatattgtgaaacctataaatattaaagagatac |
42551298 |
T |
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| Q |
113 |
acactaatgttgggtatgc |
131 |
Q |
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| T |
42551297 |
acactaatgttgggtatgc |
42551279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 42551244 - 42551203
Alignment:
| Q |
165 |
ttgtgttttcttacctaataaaagagaacaaggatgagttct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551244 |
ttgtgttttcttacctaataaaagagaacaaggatgagttct |
42551203 |
T |
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