View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19966_low_1 (Length: 915)
Name: NF19966_low_1
Description: NF19966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19966_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 353 - 838
Target Start/End: Complemental strand, 54080584 - 54080107
Alignment:
| Q |
353 |
ctgatcctttgcgtgaacagctcatctcatggttataggtgaggtagggattttgtctgtgcaccagaaagtctactttttgttttgccaatagtggtgg |
452 |
Q |
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| T |
54080584 |
ctgatcctttgcgtggacagctcatctcatggttataggtgaggtagggattttgtctgtgcaccagaaagtctactttttgttttgccaatagtggtgg |
54080485 |
T |
|
| Q |
453 |
tgccactgtcagttccctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatat |
552 |
Q |
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| T |
54080484 |
tgccactgtcagtctcctaagttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatat |
54080385 |
T |
|
| Q |
553 |
ctaggtgttcattcttatacatggttcaagaatgctattatatttacccttctgagagtgacttactcagtgggggatcattgatcatttctgaactctt |
652 |
Q |
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| T |
54080384 |
ctaggtgttcattcttatacaaggttcaagaatgctattatatttacccttctgagagtgacttactcagtaggggatcattgatcatttctgaactctt |
54080285 |
T |
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| Q |
653 |
cttttggattcatttgttaatgatcatatttttggagtgacttctaagataggatgcttgaaaatcgtttgatattttaatagtgatggactgatggtac |
752 |
Q |
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| T |
54080284 |
cttttggattcatttgttaatgatcatatttttggagtggcttctaagataggatgcttgaaaatcgtttgatattttaatagtg--------atggtac |
54080193 |
T |
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| Q |
753 |
cactctcagtgaatagaaattatgtattgcatactctcaatttataaggcgatggccaatgttgattaaacaaagaataacgacaa |
838 |
Q |
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| T |
54080192 |
cactctcagtgaatagaaattatgtattgcttactctcaatttataaggcgatggccaatgtcgattaaacaaagaataacgacaa |
54080107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 54080941 - 54080620
Alignment:
| Q |
1 |
cagtgtatttgttgttgatactctgaagaggttttgaagtat--ttatagctgctgaatgctcttgttttggtgtgaacatgtggaatgattattttaag |
98 |
Q |
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| T |
54080941 |
cagtgtatttgttgttgatactctgaagaggttttgaagtatatttatagccgctgaatgctctagttttggtgtgaacatgtggaatgattattttaag |
54080842 |
T |
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| Q |
99 |
tttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttgtggttgaagccccttgaacatgcacattcgca |
198 |
Q |
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| T |
54080841 |
tttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttgtggttgaagccccttgaacatgcacattcgca |
54080742 |
T |
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| Q |
199 |
tgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttattattgactatatgcatgata |
298 |
Q |
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| T |
54080741 |
tgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatgaaaggctgtttattattgactatatgcatgata |
54080642 |
T |
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| Q |
299 |
atatgacatggtgtttttgctc |
320 |
Q |
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| T |
54080641 |
atatgacatggtgtttttgctc |
54080620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 67 - 288
Target Start/End: Complemental strand, 54084228 - 54084009
Alignment:
| Q |
67 |
ttggtgtgaacatgtggaatgattattttaagtttgaggctagaaagtgggggaaatcatatttgcgtggcatatttggatttggatgaacaaaaacttg |
166 |
Q |
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| T |
54084228 |
ttggtgtgaaaatgcggaatgattattttaagtttgaggctagaaagtagaggagatcatattggcgtggcatatttgaatttggatggataaaaacttg |
54084129 |
T |
|
| Q |
167 |
tggttgaagccccttgaacatgcacattcgcatgatttatgacatgttccaatacaatatgtcgactcatatgatggccactaaccatagtggaggatga |
266 |
Q |
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| T |
54084128 |
tggttgaaacgccttgaacttgctcattggcatgatttatggcatgtgccaataca--atgccgactcatacgatggccactctacttagtggaggatga |
54084031 |
T |
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| Q |
267 |
aaggctgtttattattgactat |
288 |
Q |
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|||| |||||||| |||||||| |
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| T |
54084030 |
aaggttgtttattgttgactat |
54084009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 474 - 593
Target Start/End: Complemental strand, 54083669 - 54083555
Alignment:
| Q |
474 |
ttttgtataaggtaatagtggtatatatatcattaactttttgttgcatggtgaccaatttgcacttagattactatatctaggtgttcattcttataca |
573 |
Q |
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| T |
54083669 |
ttttgtataagctagtagtggt----atatcattaactttttgttgcatgatgatcaatttgcacctagattactatatct-ggtgctcattcttatgga |
54083575 |
T |
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| Q |
574 |
tggttcaagaatgctattat |
593 |
Q |
| |
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| T |
54083574 |
aggttcaagaatgcttttat |
54083555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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