View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19966_low_2 (Length: 429)
Name: NF19966_low_2
Description: NF19966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19966_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 25682425 - 25682587
Alignment:
| Q |
9 |
agcataggatgtcatgtgtgtgagactgtgaaatgtgatgctgtgctgtctctgatgcagacctaaaacctctctaaaatataatgtaatgtgaaatata |
108 |
Q |
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| T |
25682425 |
agcagaggatgtcatgtgtgagagactgtgaaatgtgatgctgtgctgtctctgatgcagacctaaaacctctccaaaatataatgtaatgtgaaatata |
25682524 |
T |
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| Q |
109 |
tgctctttcgtcgggaatcacggggtttgttcctccttatctatatttacaaattaaacactg |
171 |
Q |
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| T |
25682525 |
tgctctttcgtcgggaatcacggggtttgttcctccttatctatatttacaaattaaacactg |
25682587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 246 - 413
Target Start/End: Original strand, 25682662 - 25682831
Alignment:
| Q |
246 |
gatctaggcagatgtatttattgtttattacttggcatacataatattattataaacttctagtatcatatatatcatcggagttcacttacaaataata |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
25682662 |
gatctaggcagatgtatttattgtttattacttggcatacataatattattataaacttctagtatcatacatatcatcggagttcacttacaaattata |
25682761 |
T |
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| Q |
346 |
ttgaaagagac--aaaaaactcaaattcactttcaatacaatacatatcaccattatttcttattctttt |
413 |
Q |
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| T |
25682762 |
ttgaaagagacaaaaaaaactcaaattcactttcaatacaatacatatcaccattatttcttattctttt |
25682831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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