View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19966_low_3 (Length: 426)
Name: NF19966_low_3
Description: NF19966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19966_low_3 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 191 - 411
Target Start/End: Complemental strand, 479417 - 479197
Alignment:
| Q |
191 |
cgtgtgatcagattcaagcctagatatagaattatctaaagatgggtcaggggatatagggttactgaactctaaggaagatgaaggaacttcctcctta |
290 |
Q |
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| T |
479417 |
cgtgtgatcagattcaagtctagatatagaattatctaaagtagggttaggggatatagggttactgatctctaaggaagatgaaggaacttcctcctta |
479318 |
T |
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| Q |
291 |
tactccactaaatgtgatgatgataaaaagggacattcatgctttgatggagttggaaatgtgttgttaaagctaagtaatattataggggaagtgtcat |
390 |
Q |
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| T |
479317 |
tactccactaaatgtgatgatgataaaaagggaccttcatgctttgatggagttgaaaatgtgttgttaaagctaagtaatattatagggaaagtgtcat |
479218 |
T |
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| Q |
391 |
tggggtcatctatgatgtgag |
411 |
Q |
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| T |
479217 |
tggggtcatctatgatgtgag |
479197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 480837 - 480645
Alignment:
| Q |
4 |
attattattaatcatcaatgcggtattcataatcatttcacaacttggaattaaattacaatgcaacttcatcaatcttgtacatggaaatgaaataaat |
103 |
Q |
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| T |
480837 |
attattattaatcatcaatgcggtagtcataatcatttcacatcttggaattaaattacaatgcaacttcatcgatcttgtacatggaaatgaaataaat |
480738 |
T |
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| Q |
104 |
tattgatcatcaaaaaccatgaaaaggatgaaagaaatcatcaccattaaactcatcagaatcatacaagaacccatacatcaaatccgtgtg |
196 |
Q |
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| T |
480737 |
tatagatcatcaaaaaccatgaaaaggatgaaagaaatcatcaccattaaactcatcagaatcatacaagaacccatacatcaaatccgtgtg |
480645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 12465726 - 12465788
Alignment:
| Q |
308 |
tgatgataaaaagggacattcatgctttgatggagttggaaatgtgttgttaaagctaagtaa |
370 |
Q |
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| T |
12465726 |
tgatgacaaaaagggacattcttgttttgttggagttgggaatgtattattaaagctaagtaa |
12465788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 304241 - 304177
Alignment:
| Q |
309 |
gatgataaaaagggacattcatgctttgatggagttggaaatgtgttgttaaagctaagtaatat |
373 |
Q |
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| T |
304241 |
gatgataaaaagggacaatcttgttgggttggagttgggaatgtgttgttaaagctaagcaatat |
304177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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