View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19966_low_5 (Length: 324)
Name: NF19966_low_5
Description: NF19966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19966_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 8077790 - 8078078
Alignment:
| Q |
9 |
agcaaaggtaatataacatttaagaaacatcaaaagaaaggaattgattcagacgtttt-ttaactaaacaaataaaaagattaactgttgtcttacaat |
107 |
Q |
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| T |
8077790 |
agcaaaagtaatataacatttaagaaacatcaaaagaaaggaattgattcagacgtttttttaactaaacaaataaaaagattaactgttgtcttacaat |
8077889 |
T |
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| Q |
108 |
gcaagcaagaataggataaaaatgctttacacattcttttatttaattaattaacgtgtagtgaacttggtccagttgttcattaaggcctttagctata |
207 |
Q |
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| T |
8077890 |
gcaagcaagaataggataaaaatgctttacacattcttttat----ttaattaacgtgtggtgaacttagtccagttgttcattaaggcttttagctata |
8077985 |
T |
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| Q |
208 |
taagtatatatattgcttaatataccaaactaaaagcatgaaagcatgtttcactgcatttagaaattgatttagacccttaagctacttccatacaaca |
307 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8077986 |
taag----tatattgcttaatataccaaacta--------aaagcatgtttcactgcatttagaaattgatttagacccttaagctacttccatacaaca |
8078073 |
T |
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