View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19966_low_6 (Length: 244)
Name: NF19966_low_6
Description: NF19966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19966_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 27973128 - 27972907
Alignment:
| Q |
8 |
cgaataaaatgcgaaaactccttacaaccaaatcatgggattttattggctttccgcagaatgtgcaaagagaaaactatgaaagtgatgttatcgttgg |
107 |
Q |
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| T |
27973128 |
cgaataaaaagcgaaaactccttacaaccaaatcatgggattttattggctttccgcagaatgtgcaaagagaaaactatgaaagtgatgttatcgttgg |
27973029 |
T |
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| Q |
108 |
tgtaattgattctggaatttggccagaatccgaaagtttcaacgataaaggtttcagtcctccaccatccaaatggaagggcacgtgccagacttctgat |
207 |
Q |
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| T |
27973028 |
tgtaattgattctggaatttggccagagtccgaaagtttcaacgataaaggtttcagtccaccaccatccaaatggaagggcacgtgccagacttctgat |
27972929 |
T |
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| Q |
208 |
gttccctgcaataagtaatact |
229 |
Q |
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| T |
27972928 |
gttccctgcaataagtaatact |
27972907 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 34822533 - 34822628
Alignment:
| Q |
112 |
attgattctggaatttggccagaatccgaaagtttcaacgataaaggtttcagtcctccaccatccaaatggaagggcacgtgccagacttctgat |
207 |
Q |
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| T |
34822533 |
attgattctggaatttggccggaatcagaaagtttcaacgataaagaatatagtccaccaccaagcaaatggaagggcatttgccaagcttctgat |
34822628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 38839141 - 38839091
Alignment:
| Q |
87 |
tgaaagtgatgttatcgttggtgtaattgattctggaatttggccagaatc |
137 |
Q |
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| T |
38839141 |
tgaaagtgatattatcattggagtgattgattctggaatttggccagaatc |
38839091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 12862080 - 12862041
Alignment:
| Q |
120 |
tggaatttggccagaatccgaaagtttcaacgataaaggt |
159 |
Q |
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| T |
12862080 |
tggaatatggccagaatctgaaagtttcaacgataaaggt |
12862041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 17779829 - 17779792
Alignment:
| Q |
122 |
gaatttggccagaatccgaaagtttcaacgataaaggt |
159 |
Q |
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| T |
17779829 |
gaatttggccagaatctgaaagtttcaatgataaaggt |
17779792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 19081130 - 19081093
Alignment:
| Q |
122 |
gaatttggccagaatccgaaagtttcaacgataaaggt |
159 |
Q |
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| T |
19081130 |
gaatttggccagaatctgaaagtttcaatgataaaggt |
19081093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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