View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19967_high_1 (Length: 454)
Name: NF19967_high_1
Description: NF19967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19967_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 39383867 - 39383442
Alignment:
| Q |
12 |
agagactggaagaacttcccttaaaaagcagtcaacagcatgaatacctccaacaaatcctatgaagcttgaatacagtgggcattagacacgacacata |
111 |
Q |
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| T |
39383867 |
agagagtggaagaacttcccttaaaaagcagtcaacaccatgaatacctccaacaaatcctatgaagcatgaatacagtgggcattagacacgacacata |
39383768 |
T |
|
| Q |
112 |
cattgatgtgtcaacacgctaatattttcccnnnnnnnncacataattatgtttaatcatgtgtgttagtgtcgcatgggtgtttgacaccgatatgtgt |
211 |
Q |
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| T |
39383767 |
cattgatgtgtcgacacgttaatatttttc-gaaaaaaacacataattatgtttaatcatgtgtgttagtgtcgcatgggtgtctgacaccgacatgtgt |
39383669 |
T |
|
| Q |
212 |
ccgacgttagagcacgcctaatccgatgagagtttatgcttcatagacaaaaacatacgaaaaacaattaaaaataactgaaagcaatagaaaacatgtt |
311 |
Q |
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|||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39383668 |
ccgacgttgaaacacgccta-tccgataagagtttatgcttcatagacaaaaacatacgaaaaacaattaaaaataactgaaagcaatagaaaacatgtt |
39383570 |
T |
|
| Q |
312 |
tcccttatttgtttaacttcttgagcttcttgttnnnnnnnnnnnnncttcttgagcttgatagtagcatatcaatcaaaggcttctcgaccgacaaatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39383569 |
tcccttatttgtttaacttcttgagcttcttgtt-aaaaaaaaaaaacttcttgagcttgatagtagcatatcaatcaaaggcttctcgaccgacaaatt |
39383471 |
T |
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| Q |
412 |
taacttttacaatattgcaccttcttaat |
440 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39383470 |
taacttttacaatattgcaccttcttaat |
39383442 |
T |
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