View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19967_low_2 (Length: 420)
Name: NF19967_low_2
Description: NF19967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19967_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 48167529 - 48167127
Alignment:
| Q |
18 |
acttaccttgatatctctatggacaacacaaccctctatatgatgatggagatacttaagcgcaaatgaacattctctcaaaatcttcactcttgcttcc |
117 |
Q |
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| T |
48167529 |
acttaccttgatatctctatggacaacacaaccctctatatgatgatggagatacttaagcgcaaatgaacattctctcaaaatcttcactcttgcttcc |
48167430 |
T |
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| Q |
118 |
catgtcaaatggctgtctcttcctgaacatagtcacacacacataaataaaatcattgtttacattaacattggaatatagtgaatgattgatcaagggt |
217 |
Q |
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| T |
48167429 |
catgtcaaatggctgtctcttcctgaacatagtcacacacacataaataaaatcattgtttacattaacattggaatatagtgaatgattgatcaagggt |
48167330 |
T |
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| Q |
218 |
agtgaagagtagagagcattactcaagagatgttgagcaagatttccattggcacagaactcatagacaagatatctttcgccatcttccatgcaacagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48167329 |
agtgaagagtagagagcattactcaagagatgttgagcaagatttccattggcacagaactcgtagacaagatatctttcgccatcttccatgcaacagc |
48167230 |
T |
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| Q |
318 |
caaacaagcaaacaaggtttggatgacgaagtctagaaagaccagcaagttctcgagtgaaagaatcagaactagaggtgttactctttgtcaaatgctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48167229 |
caaacaagcaaacaaggtttggatgacgaagtctagaaagaccagcaagttctcgagtgaaagaatcagaactagaggtgttactctttgtcaaatgctt |
48167130 |
T |
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| Q |
418 |
gat |
420 |
Q |
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| T |
48167129 |
gat |
48167127 |
T |
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