View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19968_high_3 (Length: 308)

Name: NF19968_high_3
Description: NF19968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19968_high_3
NF19968_high_3
[»] chr4 (5 HSPs)
chr4 (1-299)||(49272508-49272798)
chr4 (14-161)||(23406518-23406672)
chr4 (160-298)||(52723872-52724007)
chr4 (32-95)||(4848715-4848778)
chr4 (32-95)||(5198927-5198990)
[»] chr1 (4 HSPs)
chr1 (14-299)||(12900713-12901014)
chr1 (159-298)||(46502783-46502922)
chr1 (37-123)||(42048901-42048987)
chr1 (159-299)||(4520704-4520840)
[»] chr7 (3 HSPs)
chr7 (159-298)||(39773357-39773496)
chr7 (157-204)||(29346786-29346833)
chr7 (124-161)||(29346841-29346878)
[»] chr2 (3 HSPs)
chr2 (188-299)||(12324589-12324700)
chr2 (14-112)||(11183882-11183981)
chr2 (124-162)||(19261761-19261799)
[»] chr6 (5 HSPs)
chr6 (14-121)||(30062980-30063087)
chr6 (14-123)||(10086065-10086175)
chr6 (39-118)||(165736-165814)
chr6 (162-255)||(6033315-6033408)
chr6 (14-94)||(6919323-6919404)
[»] scaffold0274 (1 HSPs)
scaffold0274 (159-298)||(5230-5369)
[»] scaffold0271 (1 HSPs)
scaffold0271 (159-298)||(3921-4060)
[»] chr8 (5 HSPs)
chr8 (188-296)||(37263989-37264096)
chr8 (124-161)||(17011644-17011681)
chr8 (124-161)||(17545520-17545557)
chr8 (125-162)||(36316058-36316095)
chr8 (16-79)||(39721339-39721403)
[»] chr5 (2 HSPs)
chr5 (14-94)||(34272244-34272325)
chr5 (25-77)||(15027066-15027118)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 49272508 - 49272798
Alignment:
Q  1 gagagtttcaatgtgttatgattcaaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgca 100  Q
    |||||||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49272508 gagagtttcaatgtgttatgattcaaataacacat--------acacttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgca 49272599  T
Q  101 taaattgggaaaggatgatcacttgaagaaaaatgatgaaagtctctcttctctccctttgagagtaatgacttaagtttttggaccaagtcttcttcta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49272600 taaattgggaaaggatgatcacttgaagaaaaatgatgaaagtctctcctctctccctttgagagtaatgacttaagtttttggactaagtcttcttcta 49272699  T
Q  201 tcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaagttatttcatct 299  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  49272700 tcttcctactagtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatgcaaagctatttcatct 49272798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 23406518 - 23406672
Alignment:
Q  14 tgttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 112  Q
    |||||||||||||| || |||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||    |||||||||| ||||  ||||||    
T  23406518 tgttatgattcaaaatagcacatgagaaaatacacttggaaaaatgtaattggttgagctaaatagacatgtg--gcgtgattgtgcttaaacagggaaa 23406615  T
Q  113 ggatgatcact--------tgaagaaaaatgatgaaagtctctcttctctccctttg 161  Q
    |||||||||||        ||||||||||||||||||||||||| |||||| |||||    
T  23406616 ggatgatcactaagggttatgaagaaaaatgatgaaagtctctcctctctctctttg 23406672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 52724007 - 52723872
Alignment:
Q  160 tgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgta 259  Q
    |||||||||||| ||| || |||| || || ||||||||||||||  ||   |||  |||||||||||||||||| | ||||||||| ||||||||||||    
T  52724007 tgagagtaatgatttaggtctttgaactaaatcttcttctatctttttaa--gttcattaagttgtcaatttacattctattcgatcgatttctcttgta 52723910  T
Q  260 ttgtgtttttcattgaattcaatacaaagttatttcatc 298  Q
    || || |||||| ||||||||||||||||||||||||||    
T  52723909 ttttg-ttttcaatgaattcaatacaaagttatttcatc 52723872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 4848715 - 4848778
Alignment:
Q  32 acatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgatt 95  Q
    |||||||||||||||||||||| ||  ||||||||||| | |||||||||||||  ||||||||    
T  4848715 acatgagaaaatacatttggcataacataattggttgacgcaaatggacatgtggctagtgatt 4848778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 5198990 - 5198927
Alignment:
Q  32 acatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgatt 95  Q
    ||||||||||||||| | |||| ||  ||||||||||||| |||||||||||||  ||||||||    
T  5198990 acatgagaaaatacactcggcataacataattggttgaggcaaatggacatgtggctagtgatt 5198927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 12900713 - 12901014
Alignment:
Q  14 tgttatgattcaa-ataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 112  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||  ||| |||  | |||||||||||||||| ||||||    
T  12900713 tgttatgattcaagatagcacatgagaaaatacacttggcaaaatgtaattggttgagctaaataaacacgtggcttgtgattgtgcataaatagggaaa 12900812  T
Q  113 ggatgatcact--------tgaagaaaaatgatgaaagtctct-cttctctccct-------ttgagagtaatgacttaagtttttggaccaagtcttct 196  Q
     |||||||||         | ||||||||| ||||| |||||| ||||||||  |       |||||||||||| |||| || |||| || |||||||||    
T  12900813 agatgatcaccaagggttatcaagaaaaattatgaa-gtctctacttctctctttactcttcttgagagtaatggcttaggtctttgaactaagtcttct 12900911  T
Q  197 tctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaagttatttca 296  Q
    |||||||| ||||| |||  |||||||||||||||||| |  |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12900912 tctatctttctactagttgattaagttgtcaatttacattccattcaatcactttctcttgtattgtgtttttcattgaattcaatacaaagtcatttca 12901011  T
Q  297 tct 299  Q
    |||    
T  12901012 tct 12901014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 46502783 - 46502922
Alignment:
Q  159 ttgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgt 258  Q
    |||||||||||| |||| || ||| ||| |||||||||||||| || |||||  ||  |||||||||||||||||| |||||||||||||||||||||||    
T  46502783 ttgagagtaatggcttaggtctttagactaagtcttcttctatttttctactaattcattaagttgtcaatttacattttattcgatcaatttctcttgt 46502882  T
Q  259 attgtgtttttcattgaattcaatacaaagttatttcatc 298  Q
    ||||||||||| | ||||||||||||| || |||||||||    
T  46502883 attgtgttttttagtgaattcaatacagagctatttcatc 46502922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 42048901 - 42048987
Alignment:
Q  37 agaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaaggatgatcact 123  Q
    |||||||||| ||||||||||||||||||||||| ||||  ||||||||  | ||||||||||||| || ||||||| |||||||||    
T  42048901 agaaaatacacttggcaaaatgtaattggttgagctaaagagacatgtggctcgtgattgtgcatatatagggaaagtatgatcact 42048987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 299
Target Start/End: Original strand, 4520704 - 4520840
Alignment:
Q  159 ttgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgt 258  Q
    |||||| ||||||||||||| |||| || |||||||||| | |||| ||||| | |||| ||||||| |||||||| | ||||  ||||||||| | |||    
T  4520704 ttgagaataatgacttaagtctttgaactaagtcttcttttgtctttctactag-ttctaaagttgttaatttacattgtatttaatcaatttc-cctgt 4520801  T
Q  259 attgtgtttttcattgaattcaatacaaagttatttcatct 299  Q
    ||||||||||||| ||||||  ||||| |||||||||||||    
T  4520802 attgtgtttttcagtgaatt--atacatagttatttcatct 4520840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 39773357 - 39773496
Alignment:
Q  159 ttgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgt 258  Q
    |||||||||||| |||| || ||| ||| ||||||||||||||||| ||||| |||  |||| ||||||||||||| | ||||| |||||||||||||||    
T  39773357 ttgagagtaatggcttaggtctttagactaagtcttcttctatctttctactagttcattaaattgtcaatttacattctattcaatcaatttctcttgt 39773456  T
Q  259 attgtgtttttcattgaattcaatacaaagttatttcatc 298  Q
    ||||| ||||| | ||||||||||||||||||||||||||    
T  39773457 attgtattttttagtgaattcaatacaaagttatttcatc 39773496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 29346833 - 29346786
Alignment:
Q  157 ctttgagagtaatgacttaagtttttggaccaagtcttcttctatctt 204  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  29346833 ctttgagggtaatgacttaagtctttggactaagtcttcttctatctt 29346786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 29346878 - 29346841
Alignment:
Q  124 tgaagaaaaatgatgaaagtctctcttctctccctttg 161  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  29346878 tgaagaaaaatgatgaaagtctctcctttctccctttg 29346841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 188 - 299
Target Start/End: Original strand, 12324589 - 12324700
Alignment:
Q  188 aagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaa 287  Q
    |||||||||||||| |||||||| ||||||||||||  ||||||||| | |||||  ||||||| ||||||||||||||||||||| |||||||||||||    
T  12324589 aagtcttcttctatattcctactagtttcttaagtttacaatttacattgtattcagtcaatttatcttgtattgtgtttttcattaaattcaatacaaa 12324688  T
Q  288 gttatttcatct 299  Q
    ||||||||||||    
T  12324689 gttatttcatct 12324700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 11183882 - 11183981
Alignment:
Q  14 tgttatgattc-aaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 112  Q
    ||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||  | ||||| ||||||||  |||| ||||||||||||| ||||||    
T  11183882 tgttatgattctaaatagcatatgagaaaatacacttggcaaaatgtaattggtttggataaatagacatgtgtctagttattgtgcataaatagggaaa 11183981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 19261799 - 19261761
Alignment:
Q  124 tgaagaaaaatgatgaaagtctctcttctctccctttga 162  Q
    |||||||||||||||||||||| || |||||||||||||    
T  19261799 tgaagaaaaatgatgaaagtctatcctctctccctttga 19261761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 30062980 - 30063087
Alignment:
Q  14 tgttatgattcaaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaag 113  Q
    |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||| || |||||||||  ||||||    
T  30062980 tgttgtgattcaaatagcacatgagaaaatacacttggcaaaatgtaattggttgaggtaaatggacatgtggccagtgtttttgcataaatatggaaag 30063079  T
Q  114 gatgatca 121  Q
    ||||||||    
T  30063080 gatgatca 30063087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 10086065 - 10086175
Alignment:
Q  14 tgttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 112  Q
    |||||||||||||| || ||||||||||||||||  | | ||||| |||||||||||| ||||||||||||||  ||||||||||| |||||| ||||||    
T  10086065 tgttatgattcaaaatagcacatgagaaaatacacattgaaaaatataattggttgagataaatggacatgtggctagtgattgtgtataaatagggaaa 10086164  T
Q  113 ggatgatcact 123  Q
    |||||||||||    
T  10086165 ggatgatcact 10086175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 165736 - 165814
Alignment:
Q  39 aaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaaggatga 118  Q
    ||||||||||||| |||||||||||| |||||||||||  ||| |||  ||||||| ||| ||||| |||||||||||||    
T  165736 aaaatacatttggtaaaatgtaattgattgaggtaaataaacacgtggctagtgatcgtgtataaa-tgggaaaggatga 165814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 6033408 - 6033315
Alignment:
Q  162 agagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaa-tttacactttattcgatcaatttctct 255  Q
    |||||||||| ||| ||||| |||| ||||||||||||||||| ||||   |||||||||||||||| ||| || | ||||| ||||||||||||    
T  6033408 agagtaatgattta-gttttaggactaagtcttcttctatctttctacaattttcttaagttgtcaattttgcattgtattccatcaatttctct 6033315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 6919323 - 6919404
Alignment:
Q  14 tgttatgattcaa-ataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgat 94  Q
    ||||||||||||| ||| || ||| ||||||||| |||||| ||  ||||||||||||| |||||||||||||  |||||||    
T  6919323 tgttatgattcaatatagcatatgggaaaatacacttggcataacataattggttgaggcaaatggacatgtggctagtgat 6919404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 298
Target Start/End: Complemental strand, 5369 - 5230
Alignment:
Q  159 ttgagagtaatgacttaagtttttggaccaa-gtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttg 257  Q
    |||||||||||| |||| || ||| ||| || ||| ||||||||||| ||||| |||  |||||||||||||||||| | ||||  | ||||||||||||    
T  5369 ttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctactagttcattaagttgtcaatttacattctatttaaacaatttctcttg 5270  T
Q  258 tattgtgtttttcattgaattcaatacaaagttatttcatc 298  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  5269 tattgtgttttt-agtgaattcaatacaaagttatttcatc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 3921 - 4060
Alignment:
Q  159 ttgagagtaatgacttaagtttttggaccaa-gtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttg 257  Q
    |||||||||||| |||| || ||| ||| || ||| ||||||||||| ||||| |||  |||||||||||||||||| | ||||  | ||||||||||||    
T  3921 ttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctactagttcattaagttgtcaatttacattctatttaaacaatttctcttg 4020  T
Q  258 tattgtgtttttcattgaattcaatacaaagttatttcatc 298  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  4021 tattgtgttttt-agtgaattcaatacaaagttatttcatc 4060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 296
Target Start/End: Original strand, 37263989 - 37264096
Alignment:
Q  188 aagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaa 287  Q
    ||||||||||||||||| ||||  |||||||| |||||| |||| |||| ||| | ||||||||||||||||||||||  |||| |||| ||||||||||    
T  37263989 aagtcttcttctatctttctacaagtttctta-gttgtccatttgcactgtatcccatcaatttctcttgtattgtgtaattcagtgaactcaatacaaa 37264087  T
Q  288 gttatttca 296  Q
    |||||||||    
T  37264088 gttatttca 37264096  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 17011681 - 17011644
Alignment:
Q  124 tgaagaaaaatgatgaaagtctctcttctctccctttg 161  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  17011681 tgaagaaaaatgatgcaagtctctcctctctccctttg 17011644  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 17545520 - 17545557
Alignment:
Q  124 tgaagaaaaatgatgaaagtctctcttctctccctttg 161  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  17545520 tgaagaaaaatgatgcaagtctctcctctctccctttg 17545557  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 36316095 - 36316058
Alignment:
Q  125 gaagaaaaatgatgaaagtctctcttctctccctttga 162  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  36316095 gaagaaaaatgatgaaaatctctcctctctccctttga 36316058  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 39721403 - 39721339
Alignment:
Q  16 ttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatgga 79  Q
    |||||||||||| || ||||||| |||||||| ||| || ||| |||||||| ||||||||||||    
T  39721403 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggtcgaggtaaatgga 39721339  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 34272244 - 34272325
Alignment:
Q  14 tgttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgat 94  Q
    |||||||||||||| || || |||||||||||||||||||| ||  ||||||||| |||||||||||||||||| |||||||    
T  34272244 tgttatgattcaaaatagcatatgagaaaatacatttggcataacataattggtttaggtaaatggacatgtgactagtgat 34272325  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 15027118 - 15027066
Alignment:
Q  25 aaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatg 77  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  15027118 aaataacacatgagaaaatacatttggcataacataattggttgaggtaaatg 15027066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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