View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19968_low_1 (Length: 490)
Name: NF19968_low_1
Description: NF19968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19968_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 8725126 - 8725618
Alignment:
| Q |
1 |
acaattttacaatgcctatttaaaaaatgaaaacaatgttatccagagcacgtttgcaactgttgacgaggaaaataagttcgtcaattcgatgttcgtt |
100 |
Q |
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| T |
8725126 |
acaattttacaatgcctatttcaaaaatgaaaacaatgttatacagagcacgtttgcaactgttgacgaggaaaataagttcgtcaattcgatgttcgtt |
8725225 |
T |
|
| Q |
101 |
aacggggattttgttactactgaaagcagaagacaatcataacacaagaatataacgtggaaaactccgaagcctctctcactctctgaagtaaatattt |
200 |
Q |
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| T |
8725226 |
aacggggattttgttactactgaaagcagaagacaatcataacacaagaatataacgtggaaaactccgaagcctctctcactctctgaagtaaatattt |
8725325 |
T |
|
| Q |
201 |
atactacagctctcaacatgttaagacaagagtatgagataaaga----------------taagtgtttacgacttgtgcatattgtaaataagaattt |
284 |
Q |
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| T |
8725326 |
atactacagctctcaacatgttaagacaagagtatgagataaagataagagtatataaacttaagtgtttccgacttgtgcatattgtaaataagaattt |
8725425 |
T |
|
| Q |
285 |
gattatatacaacatcgacctccctcttcctttaacatactcggtgatgtgagacttattctaagatgtttcattccaatcaattccaacaagtctgttt |
384 |
Q |
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| T |
8725426 |
gattatatacaacatcgacctccctcttcctttaacatactcggtaatgtgagacttgttctaagatgtttcattccaatcaattccaacaagtctgttt |
8725525 |
T |
|
| Q |
385 |
ccatttgtttctgaaccatccattatggtaacatgagtgttgccacatttttgcaatgcagggtgattttattttatggattaggaataaagt |
477 |
Q |
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| T |
8725526 |
ccatttgtttgtgaaccatccattatggtaacatgagtgttgccacatttttgcaatgcagggtgattttcttttatggattaggaataaagt |
8725618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 7284456 - 7284484
Alignment:
| Q |
135 |
aatcataacacaagaatataacgtggaaa |
163 |
Q |
| |
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| T |
7284456 |
aatcataacacaagaatataacgtggaaa |
7284484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 42234168 - 42234132
Alignment:
| Q |
328 |
gtgatgtgagacttattctaagatgtttcattccaat |
364 |
Q |
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| T |
42234168 |
gtgatgtgatacttgttctaagatgtttcattccaat |
42234132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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