View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19968_low_2 (Length: 461)
Name: NF19968_low_2
Description: NF19968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19968_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 31304028 - 31304453
Alignment:
| Q |
19 |
ccacctttgggttcaaaaactaaaacagttggagaaaggtggaaggagtatcaggggatgagaaattgggacggtttgcttgatccgttggacgacattc |
118 |
Q |
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| T |
31304028 |
ccacctatggatccaaaaactaaaacacttggaaaaaggtggaaggagtatcaagggatgagaaattgggacggtttgcttgatccgttggacgacattc |
31304127 |
T |
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| Q |
119 |
tacgttgtgaaatcctacgctatggccattttgttgaagctacgtataaatcatttgagtttgatccttcatcttccaagtatgcaaattgtagatttcc |
218 |
Q |
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| T |
31304128 |
tacgttgtgaaatcctacgctatggccattttgttgaagctacgtataaatcatttgagtttgatccttcatcttccaagtatgcaaattgtagatttcc |
31304227 |
T |
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| Q |
219 |
caaaagcacactcttagaatgttgtggtttacctaacacggggtacaaagtgaccaaatacctacatgcaacttctgggattcagctaccaagttggatg |
318 |
Q |
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| T |
31304228 |
caaaagcacactcttagaatgttgtggtttacctaacacggggtacaaagtgaccaaatacctacatgcaacttctgggattcagctaccaagttggatg |
31304327 |
T |
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| Q |
319 |
gataaggcaccagattgggtagcaacccaatcaagctatattggatacgtagctgtgtgtgataacaaggaagaaatcaaaagacttggacggcgtgatg |
418 |
Q |
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| T |
31304328 |
gataaggcaccaaattgggtagcaacccaatcaagctatattggatacgtagctgtgtgtgataacaaggaagaaatcaaaagacttggacggcgtgatg |
31304427 |
T |
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| Q |
419 |
tggttattgctattagaggaacatgc |
444 |
Q |
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| T |
31304428 |
tggttattgctattagaggaacatgc |
31304453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 395
Target Start/End: Original strand, 31262064 - 31262332
Alignment:
| Q |
127 |
gaaatcctacgctatggccattttgttgaagctacgtataaatcatttgagtttgatccttcatcttccaagtatgcaaattgtagatttcccaaaagca |
226 |
Q |
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| T |
31262064 |
gaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaattcgacccttcttcatcaaactatgccacaaacaagttccccaaaacca |
31262163 |
T |
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| Q |
227 |
cactcttagaatgttgtggtttacctaacacggggtacaaagtgaccaaatacctacatgcaacttctgggattcagctaccaagttggatggataaggc |
326 |
Q |
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| T |
31262164 |
cactcttcaaaaaatgtggtttacccaaaaccggttacaaagtaacaaaacatttacatgctacctcaggaattcaactacctagttggatagacaaagc |
31262263 |
T |
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| Q |
327 |
accagattgggtagcaacccaatcaagctatattggatacgtagctgtgtgtgataacaaggaagaaat |
395 |
Q |
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| T |
31262264 |
accatcatgggttgcaacaaaatcaagctacattggttatgtagctgtttgtgacaacaaagaagaaat |
31262332 |
T |
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