View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19968_low_3 (Length: 451)
Name: NF19968_low_3
Description: NF19968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19968_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 207 - 434
Target Start/End: Original strand, 7094027 - 7094248
Alignment:
| Q |
207 |
atcttgaggcaaggcaacttatgtgtttggatcatctattgattactcattaaatcttgattgttagattaatttaatagcttggagtactatatctttt |
306 |
Q |
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| T |
7094027 |
atcttgaggcaaggcaacttatgtgtttggatcatcttcggattactcattaaatcttgattgttagattaatttaataggttggagtactatatcttt- |
7094125 |
T |
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| Q |
307 |
attttacctaaaattgaattattgtaaaagaatacaaaatcttggtggacaagaaacaaaactcgtgtaaaagtcaaacgtatataaagtcttacatttt |
406 |
Q |
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| T |
7094126 |
attttacctaaaattgaattattgtaaaagaatacaaaatcttggtggacaagaaacaaaactcgtgtaaaagtcaaacgtatataaagtcttacatttt |
7094225 |
T |
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| Q |
407 |
ttatgtaatgtaacttcgagcgatattt |
434 |
Q |
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|||||| ||||||||||||||||| |
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| T |
7094226 |
ttatgt-----aacttcgagcgatattt |
7094248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 7093910 - 7093987
Alignment:
| Q |
90 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacacaaaatggccttctag |
167 |
Q |
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| T |
7093910 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacacaaaatggccttctag |
7093987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 25252499 - 25252436
Alignment:
| Q |
90 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacaca |
153 |
Q |
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| T |
25252499 |
cgaaacaaggacatgatagaaaccaatgttgagccgtctctaagcctccgcaaccagtcacaca |
25252436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 23810964 - 23811011
Alignment:
| Q |
91 |
gaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctcc |
138 |
Q |
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| T |
23810964 |
gaaacaaggacaggagagaaacaaatggtgagccgtctctaagcctcc |
23811011 |
T |
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