View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19968_low_8 (Length: 237)
Name: NF19968_low_8
Description: NF19968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19968_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 13541938 - 13541771
Alignment:
| Q |
6 |
tacagacagaaccagaaagatgtaaggtcatattcatgtgccacttaacatgttgaaggagcagtaaacaaatgcaccactagactcaat-gaggtatga |
104 |
Q |
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| T |
13541938 |
tacagacagaaccagaaaggtgtaaggtcatattcatgtgccacttaacatgttgaaggagcagtaaacaaatgcaccactagactcgatggaggtatga |
13541839 |
T |
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| Q |
105 |
ttaatacaaccatttgggaaatcagattccttacattcagtcaaattgtaattatgtggcctcaatta |
172 |
Q |
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| T |
13541838 |
ttaatacaaccatttgggaaatcatattccttacattaagtcaaattgtaattatgtggcctcaatta |
13541771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 13682535 - 13682702
Alignment:
| Q |
6 |
tacagacagaaccagaaagatgtaaggtcatattcatgtgccacttaacatgttgaaggagcagtaaacaaatgcaccactagactcaat-gaggtatga |
104 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
13682535 |
tacagacagaaccagaaaggtgtaaggtcatattcatgtgccacttaacatgttgaaggagcagtaaacaaatgcaccactagactcgatggaggtatga |
13682634 |
T |
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| Q |
105 |
ttaatacaaccatttgggaaatcagattccttacattcagtcaaattgtaattatgtggcctcaatta |
172 |
Q |
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| T |
13682635 |
ttaatacaaccatttgggaaatcatattccttacattaagtcaaattgtaattatgtggcctcaatta |
13682702 |
T |
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