View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19969_high_13 (Length: 281)
Name: NF19969_high_13
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19969_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 270
Target Start/End: Original strand, 53418624 - 53418857
Alignment:
| Q |
28 |
tattaatttttgtttacataattcttatttaccgcttgatcaatctacagttttcttaagtattgtgcataatcacttaatccacttgaatgctaattga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
53418624 |
tattaatttttgtttacataattcttatttaccgcttgatcaatctacagttttcttaagtattgtgcataatcactt---------gtatgctaattga |
53418714 |
T |
|
| Q |
128 |
gatgcttgtcaagaataaatatgttaaaacctgtttcaagcacgagtttatgattttagttgcagttcaattataacctttatttttgttcaagattatc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53418715 |
gatgcttgtcaagaataaatatgttaaaacctgtttcaagcacgagtttatgattctagttgcagttcaattataaccttgatttttgttcaagattatc |
53418814 |
T |
|
| Q |
228 |
tgacatctgaattttattgattatttttcattaatttgttcat |
270 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53418815 |
tgctatctgaattttattgattgtttttcattaatttgttcat |
53418857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 53419743 - 53419782
Alignment:
| Q |
141 |
aataaatatgttaaaacctgtttcaagcacgagtttatga |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
53419743 |
aataaatatgttaaaacctgtttcaagcacaagtgtatga |
53419782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6920848 - 6920886
Alignment:
| Q |
1 |
acgtcatacaatttaggacggaggtagtattaatttttg |
39 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6920848 |
acgtcatacaatttgggacggaggtagtattaatttttg |
6920886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 4508659 - 4508576
Alignment:
| Q |
184 |
tagttgcagttcaatt-ataacctttatttttgttcaagattatctgacatctgaattttattgattatttttcattaatttgttca |
269 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||| ||||||||| |||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
4508659 |
tagttgcagttcaatttataaccttgattt--gttctagattatcttgtatctgaattt-attgattgtttttcattaatgtgttca |
4508576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 4509214 - 4509270
Alignment:
| Q |
212 |
tttgttcaagattatctgacatctgaattttattgattatttttcattaatttgttca |
269 |
Q |
| |
|
||||||| |||||||||| |||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
4509214 |
tttgttctagattatctggtatctgaattt-attgattgtttttcattaatgtgttca |
4509270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14528005 - 14528039
Alignment:
| Q |
1 |
acgtcatacaatttaggacggaggtagtattaatt |
35 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
14528005 |
acgtcatacaatttaggacggagggagtattaatt |
14528039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38045170 - 38045207
Alignment:
| Q |
1 |
acgtcatacaatttaggacggaggtagtattaattttt |
38 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
38045170 |
acgtcatacaatttgggacggagggagtattaattttt |
38045207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 52703625 - 52703657
Alignment:
| Q |
1 |
acgtcatacaatttaggacggaggtagtattaa |
33 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
52703625 |
acgtcatacaatttaggacggaggaagtattaa |
52703657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University