View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19969_high_5 (Length: 348)

Name: NF19969_high_5
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19969_high_5
NF19969_high_5
[»] chr3 (11 HSPs)
chr3 (22-341)||(2769099-2769418)
chr3 (22-339)||(2759246-2759563)
chr3 (22-342)||(2818586-2818906)
chr3 (22-341)||(2807297-2807616)
chr3 (22-341)||(2838389-2838708)
chr3 (22-327)||(2855599-2855904)
chr3 (22-327)||(5412930-5413235)
chr3 (22-339)||(2749027-2749344)
chr3 (22-327)||(2797405-2797710)
chr3 (247-327)||(2790411-2790491)
chr3 (21-200)||(2790491-2790670)
[»] scaffold0691 (1 HSPs)
scaffold0691 (22-341)||(5941-6260)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 341
Target Start/End: Complemental strand, 2769418 - 2769099
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    |||||||||||||||||||||| || ||||||||||||||||||||| | ||||||| ||||||| |  ||| ||||| ||||| | ||||| |||||||    
T  2769418 aagaatatcaaatacctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcag 2769319  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2769318 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttac 2769219  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    | ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2769218 cttttggctgtcataaactagtttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 2769119  T
Q  322 caaccaaatagttcttctct 341  Q
    |||||||||| |||||||||    
T  2769118 caaccaaataattcttctct 2769099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 339
Target Start/End: Complemental strand, 2759563 - 2759246
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |  ||| |||||||||||||||||||||||||||    
T  2759563 aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag 2759464  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||  |||||||||| | || ||||||    
T  2759463 tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttac 2759364  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    | ||||||||||| ||||||| ||||||||||||||||| |    ||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||    
T  2759363 cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataac 2759264  T
Q  322 caaccaaatagttcttct 339  Q
    |||||| |||||||||||    
T  2759263 caaccatatagttcttct 2759246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 342
Target Start/End: Complemental strand, 2818906 - 2818586
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |  ||||||||  ||| | ||  |||||||||||    
T  2818906 aagaatattaaatacctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcag 2818807  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
     ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||| ||||||||||| | || ||||||    
T  2818806 cttcctgataaaattgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttac 2818707  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    | ||||||||||| ||||||| ||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  2818706 cttttggctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataac 2818607  T
Q  322 caaccaaatagttcttctctc 342  Q
    |||||| ||||||||||||||    
T  2818606 caaccatatagttcttctctc 2818586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 22 - 341
Target Start/End: Complemental strand, 2807616 - 2807297
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    |||||||||||||||||||||| ||  ||||||| ||| || |||| |||||||||  ||||||| || ||||||||||| |||||||||||||||||||    
T  2807616 aagaatatcaaatacctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcag 2807517  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  2807516 tttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttac 2807417  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    ||||||||| ||| ||||||| ||||||||||||||||||| |  ||| |||||||||||||| || ||||| ||||||| |||| ||||||||||||||    
T  2807416 cgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataac 2807317  T
Q  322 caaccaaatagttcttctct 341  Q
    ||| || | | |||||||||    
T  2807316 caaacagacatttcttctct 2807297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 22 - 341
Target Start/End: Original strand, 2838389 - 2838708
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    ||||||||||| |||||||||| ||  ||||||| ||| || |||  ||||||||||  ||||||    ||| | ||| ||| |||||||||||||||||    
T  2838389 aagaatatcaagtacctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcag 2838488  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
    || || ||||||||||||||||||| |||||||  || ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  2838489 ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttac 2838588  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    | ||||||| ||| ||||||| ||||||||||||||||||| |  |||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  2838589 cttttggctttcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataac 2838688  T
Q  322 caaccaaatagttcttctct 341  Q
    |||||| ||| |||||||||    
T  2838689 caaccatatatttcttctct 2838708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 22 - 327
Target Start/End: Original strand, 2855599 - 2855904
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    ||||||| |||||||||||||| ||  ||||||| |||||| | |||||||||||||  |||||| |  ||| | ||| ||  |||||||||||||||||    
T  2855599 aagaataccaaatacctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcag 2855698  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
    || || ||||||||||||||||||| |||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2855699 ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttac 2855798  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    | ||||||||||| ||| ||| ||||||||||| ||||||| | ||||||||||||| |||||||| |||||| |||||| || |  ||| |||||||||    
T  2855799 cttttggctgtcaaaaattagcttggcaagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataac 2855898  T
Q  322 caacca 327  Q
    ||||||    
T  2855899 caacca 2855904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 22 - 327
Target Start/End: Complemental strand, 5413235 - 5412930
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    |||||||||||||||||||||| ||  ||||||| ||| || |||||||||||||||| |||||| |  ||| ||||| |||  ||||||| ||||||||    
T  5413235 aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcag 5413136  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
    || || ||||||||||||||||||| |||||||  || ||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||| |||    
T  5413135 ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgatac 5413036  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    | ||||||| ||| ||||||| ||||||||||||||||||| |   ||||||||||||||||||||||| ||||| || |  |||||||| |||||||||    
T  5413035 cttttggctttcaaaaactagcttggcaagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataac 5412936  T
Q  322 caacca 327  Q
    ||||||    
T  5412935 caacca 5412930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 22 - 339
Target Start/End: Complemental strand, 2749344 - 2749027
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    |||||||||||||||||||||| ||  ||||||| ||| || |||||||| ||||||  |||||| |  ||| ||||| |||   |||||| ||||| ||    
T  2749344 aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag 2749245  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
    |   | |||| |||||||||||||| |||||||  || |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||    
T  2749244 tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatac 2749145  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    | ||| ||| ||| ||||||| ||||||||||||||||||| |   || |||||||||||||| |||||||| ||||||| |||| |||| |||||||||    
T  2749144 ctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataac 2749045  T
Q  322 caaccaaatagttcttct 339  Q
    |||||| | |||||||||    
T  2749044 caaccagacagttcttct 2749027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 22 - 327
Target Start/End: Complemental strand, 2797710 - 2797405
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    ||||||||||||||| | |||| ||  ||||||| ||| || | |||||||| |||| ||||||| |  ||| ||||| |||    |||||||  |||||    
T  2797710 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcag 2797611  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
    ||||   |||||||| ||||||||| || |||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  2797610 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttac 2797511  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    | |||| |||||  ||||||| ||||||||||||||||||| |  ||| |||||||| |||||||| ||||||||||||| |||||  ||||| | ||||    
T  2797510 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 2797411  T
Q  322 caacca 327  Q
    ||||||    
T  2797410 caacca 2797405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 2790491 - 2790411
Alignment:
Q  247 gcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaacca 327  Q
    |||||||||||||||| |  ||| |||||||| |||||||| ||||||||||||| |||||  ||||||||||||||||||    
T  2790491 gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaacca 2790411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 2790670 - 2790491
Alignment:
Q  21 gaagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttca 120  Q
    |||||||||||||||| | |||| ||  ||||||| ||| || | || ||| |||||| ||||||| |  ||| ||||| |||    ||||||| |||||    
T  2790670 gaagaatatcaaatactttttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggccttca 2790571  T
Q  121 gtttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacg 200  Q
    |||||   |||||||| ||||||||| || |||| || ||| ||||| ||| ||||||||||||| ||||||||||||||    
T  2790570 gtttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaagcacg 2790491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 22 - 341
Target Start/End: Original strand, 5941 - 6260
Alignment:
Q  22 aagaatatcaaatacctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcag 121  Q
    |||||||||||||||||||||| ||  ||||||| ||| || |||||||| | |||| ||||||| |  ||| ||||| | |  ||||||||||||||||    
T  5941 aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcag 6040  T
Q  122 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgctgttac 221  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| | || ||||||    
T  6041 tttcccgacaaaattgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttac 6140  T
Q  222 cgtttggctgtcataaactagtttggcaagagtggtttttcttttaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 321  Q
    | ||||||||||| ||||||| ||||||||||||||||| | | |||| ||||||||||||||||| || || ||||||| ||||| || ||||||||||    
T  6141 cttttggctgtcaaaaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataac 6240  T
Q  322 caaccaaatagttcttctct 341  Q
    |||||| ||| ||| |||||    
T  6241 caaccatataattcctctct 6260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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