View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19969_high_9 (Length: 336)
Name: NF19969_high_9
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19969_high_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 23 - 336
Target Start/End: Original strand, 53577063 - 53577377
Alignment:
| Q |
23 |
caaaataatcacaatataagttatctcgttatttttggtttataagacgatgaatatcaatctttataaacttatatttaagactttcgcatcctatcca |
122 |
Q |
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| T |
53577063 |
caaaataatcacaatataagttatctcgttatttttggtttataagacgatgaatatcaatctttataaacttatatttaagactttcgcatcctatcca |
53577162 |
T |
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| Q |
123 |
cttaatgtaaacggcgaggtagcctaaattgatcaaacactggtaccatattattttttatattttgtataacttattcttacaaatttggccactaaat |
222 |
Q |
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| T |
53577163 |
attaatgtaaacggcgaggtagcctaaattgatcaaacactggtaccatattattttttatattttgtataacttattcttacaaatttggccactaaat |
53577262 |
T |
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| Q |
223 |
aagagagaattatgtcacattttattgcttaga-nnnnnnnncttctaaaatagttggaatttgtttccgtccgcaaataaatgtataacttgttgttgt |
321 |
Q |
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| T |
53577263 |
aagagagaatgatgtcacattttattgcttagattttttttccttctaaaatagttggaatttgtttccgtccgcaaataaatgtataacttgttgttgt |
53577362 |
T |
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| Q |
322 |
gtgcaagtgtgagtt |
336 |
Q |
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| T |
53577363 |
gtgcaagtgtgagtt |
53577377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 53577834 - 53577957
Alignment:
| Q |
191 |
ataacttattcttacaaatttggccactaaataagagagaattatgtcacattttattgcttagannnnnnnncttctaaaatagttggaatttgtttcc |
290 |
Q |
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| T |
53577834 |
ataacttattcttacaaatttgacctctaaataagagagaatgatgtcacattttatagcttagatttttttt-tttttaaatagttagaatttgtttcc |
53577932 |
T |
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| Q |
291 |
gtccgcaaataaatgtataacttgt |
315 |
Q |
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| T |
53577933 |
gtccgcaaataaatgtataacttgt |
53577957 |
T |
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