View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19969_low_10 (Length: 336)

Name: NF19969_low_10
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19969_low_10
NF19969_low_10
[»] chr3 (22 HSPs)
chr3 (1-310)||(34060098-34060398)
chr3 (123-213)||(33689175-33689265)
chr3 (123-209)||(51046122-51046208)
chr3 (123-209)||(30734451-30734537)
chr3 (123-213)||(55223231-55223321)
chr3 (123-214)||(47492096-47492187)
chr3 (124-209)||(41752967-41753052)
chr3 (123-186)||(29031763-29031826)
chr3 (150-209)||(30580759-30580818)
chr3 (127-209)||(43139762-43139844)
chr3 (150-208)||(51046077-51046135)
chr3 (123-208)||(30580805-30580890)
chr3 (161-209)||(45103112-45103160)
chr3 (123-206)||(18321657-18321740)
chr3 (123-186)||(47677304-47677367)
chr3 (123-185)||(30476523-30476585)
chr3 (95-186)||(49418704-49418803)
chr3 (132-208)||(50524706-50524782)
chr3 (124-186)||(1801496-1801558)
chr3 (163-209)||(50524791-50524837)
chr3 (164-209)||(1801449-1801494)
chr3 (150-186)||(49418717-49418753)
[»] chr1 (28 HSPs)
chr1 (94-209)||(36290427-36290542)
chr1 (123-209)||(29179646-29179732)
chr1 (132-209)||(48498418-48498495)
chr1 (122-213)||(9157309-9157400)
chr1 (123-209)||(1091593-1091679)
chr1 (123-209)||(32540797-32540883)
chr1 (123-209)||(37155049-37155135)
chr1 (123-209)||(48993966-48994052)
chr1 (124-209)||(5995372-5995457)
chr1 (124-209)||(44706834-44706919)
chr1 (123-186)||(47303421-47303484)
chr1 (123-213)||(4608995-4609085)
chr1 (127-186)||(5694942-5695001)
chr1 (123-186)||(29371394-29371457)
chr1 (123-209)||(17127613-17127699)
chr1 (127-205)||(45728294-45728372)
chr1 (136-209)||(21630045-21630118)
chr1 (161-206)||(33219660-33219705)
chr1 (148-209)||(46932000-46932061)
chr1 (169-209)||(15220906-15220946)
chr1 (123-186)||(38674554-38674615)
chr1 (123-186)||(741551-741614)
chr1 (123-174)||(8337900-8337951)
chr1 (165-206)||(2573236-2573277)
chr1 (164-209)||(5995459-5995504)
chr1 (95-151)||(7788269-7788325)
chr1 (161-213)||(29371455-29371507)
chr1 (161-209)||(48993920-48993968)
[»] chr5 (22 HSPs)
chr5 (123-208)||(30117877-30117962)
chr5 (109-208)||(39031186-39031285)
chr5 (123-209)||(19655161-19655247)
chr5 (123-213)||(3180109-3180198)
chr5 (161-213)||(12913890-12913942)
chr5 (123-209)||(291100-291186)
chr5 (123-204)||(16439146-16439227)
chr5 (127-213)||(12913802-12913888)
chr5 (127-209)||(19598335-19598417)
chr5 (169-213)||(2356366-2356410)
chr5 (123-186)||(28818943-28819006)
chr5 (123-198)||(29699381-29699456)
chr5 (161-209)||(2953277-2953325)
chr5 (161-209)||(28819004-28819052)
chr5 (150-209)||(291173-291232)
chr5 (123-186)||(16802470-16802533)
chr5 (169-198)||(7009423-7009452)
chr5 (161-209)||(2093940-2093988)
chr5 (161-209)||(16971231-16971279)
chr5 (161-209)||(29699454-29699502)
chr5 (161-209)||(30117831-30117879)
chr5 (169-213)||(32485644-32485688)
[»] chr8 (16 HSPs)
chr8 (123-209)||(10086760-10086846)
chr8 (127-209)||(5667100-5667182)
chr8 (122-213)||(34229640-34229731)
chr8 (123-209)||(8796425-8796511)
chr8 (123-209)||(35441018-35441104)
chr8 (143-209)||(43844538-43844604)
chr8 (124-209)||(8243438-8243523)
chr8 (123-209)||(5033164-5033250)
chr8 (123-209)||(33841640-33841726)
chr8 (124-209)||(45191177-45191262)
chr8 (123-213)||(4958599-4958688)
chr8 (150-209)||(6296681-6296740)
chr8 (161-208)||(43844475-43844522)
chr8 (150-208)||(10086833-10086891)
chr8 (161-209)||(5033248-5033296)
chr8 (161-209)||(5667184-5667232)
[»] scaffold0586 (2 HSPs)
scaffold0586 (123-213)||(7096-7185)
scaffold0586 (161-211)||(7048-7098)
[»] chr7 (19 HSPs)
chr7 (123-209)||(11016872-11016958)
chr7 (124-209)||(34854745-34854830)
chr7 (124-209)||(38975808-38975893)
chr7 (123-209)||(4290548-4290634)
chr7 (127-193)||(22764753-22764819)
chr7 (123-209)||(27028842-27028928)
chr7 (95-209)||(45231867-45231985)
chr7 (124-213)||(30217504-30217592)
chr7 (123-206)||(15027548-15027631)
chr7 (126-209)||(41018280-41018363)
chr7 (162-209)||(42628383-42628430)
chr7 (132-185)||(10419485-10419538)
chr7 (150-209)||(11016945-11017004)
chr7 (125-208)||(41945859-41945942)
chr7 (124-186)||(7671961-7672023)
chr7 (161-209)||(4290632-4290680)
chr7 (145-209)||(27028731-27028795)
chr7 (126-186)||(29053366-29053426)
chr7 (124-180)||(48000769-48000825)
[»] chr6 (9 HSPs)
chr6 (123-213)||(17750902-17750991)
chr6 (124-209)||(551215-551300)
chr6 (123-209)||(24587464-24587550)
chr6 (122-189)||(13043480-13043547)
chr6 (164-209)||(24975755-24975800)
chr6 (161-209)||(24618604-24618652)
chr6 (123-185)||(10521898-10521960)
chr6 (128-186)||(31654331-31654389)
chr6 (95-131)||(10521938-10521974)
[»] chr4 (23 HSPs)
chr4 (120-209)||(30861820-30861909)
chr4 (123-209)||(23444318-23444404)
chr4 (123-209)||(35682169-35682255)
chr4 (123-209)||(51265448-51265534)
chr4 (123-186)||(38714849-38714912)
chr4 (123-209)||(6271705-6271791)
chr4 (123-188)||(40789203-40789268)
chr4 (161-208)||(5048887-5048934)
chr4 (123-198)||(47661856-47661931)
chr4 (123-186)||(52028575-52028638)
chr4 (95-185)||(55090009-55090107)
chr4 (161-209)||(42375097-42375145)
chr4 (123-209)||(26186065-26186149)
chr4 (123-186)||(42375036-42375099)
chr4 (147-209)||(3862619-3862681)
chr4 (147-209)||(3871376-3871438)
chr4 (122-155)||(28693971-28694004)
chr4 (161-209)||(30709987-30710035)
chr4 (161-193)||(41306637-41306669)
chr4 (161-209)||(47661929-47661977)
chr4 (161-209)||(51265532-51265580)
chr4 (95-131)||(55089890-55089926)
chr4 (95-131)||(55090085-55090121)
[»] chr2 (19 HSPs)
chr2 (123-198)||(15011294-15011369)
chr2 (123-209)||(16514427-16514513)
chr2 (137-209)||(9173044-9173116)
chr2 (123-198)||(6721965-6722040)
chr2 (161-208)||(33018632-33018679)
chr2 (124-209)||(29508741-29508826)
chr2 (150-209)||(6722027-6722086)
chr2 (162-213)||(24116008-24116059)
chr2 (163-209)||(14892349-14892395)
chr2 (161-209)||(14229356-14229404)
chr2 (126-198)||(14470644-14470716)
chr2 (161-209)||(38933674-38933722)
chr2 (123-186)||(2828610-2828673)
chr2 (124-186)||(6217274-6217336)
chr2 (123-193)||(8534165-8534235)
chr2 (163-213)||(14470591-14470641)
chr2 (164-209)||(6217227-6217272)
chr2 (95-131)||(14464568-14464604)
chr2 (161-209)||(32545875-32545923)
[»] scaffold0161 (2 HSPs)
scaffold0161 (132-209)||(27278-27355)
scaffold0161 (161-209)||(27223-27271)
[»] scaffold0180 (1 HSPs)
scaffold0180 (161-213)||(19121-19173)
[»] scaffold0047 (1 HSPs)
scaffold0047 (123-186)||(63783-63846)
[»] scaffold0016 (1 HSPs)
scaffold0016 (123-186)||(49752-49815)
[»] scaffold0481 (1 HSPs)
scaffold0481 (123-155)||(2936-2968)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 34060398 - 34060098
Alignment:
Q  1 atagctagcttaccctttcaacccaatccttctcctccacctgtattatccccacccatttccttgttaactaaaccaaaatataacacttctttgacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  34060398 atagctagcttaccctttcaacccaatccttctcctccac-------atccccacccatttccctgttaactaaaccaaaatatggcacttctttgacat 34060306  T
Q  101 agagttgag-tgatatttgtcaatcacaatgt--------ttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgt 191  Q
    ||||||  | |||||||||||||||||||| |        || ||||||| ||| |||||||||        ||||||||||||||||||||||||||||    
T  34060305 agagttaggatgatatttgtcaatcacaatatcacaatacttatgaaagagagaaaaacacaaa--------cattatgattgaccaatatcaccaatgt 34060214  T
Q  192 catccaactctatgtcacacaaccgacacaagtgttatcccagaacatattatcccacaaacaatgctacatattttaatacattcaattatttcccatt 291  Q
    |||||||||||   ||||||||  |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34060213 catccaactct---tcacacaattgacacaagtgttatcccaaaacatgttatcccacaaacaatgctacatattttaatacattcaattatttcccatt 34060117  T
Q  292 aatctcttctctattactc 310  Q
    |||||||||||||||||||    
T  34060116 aatctcttctctattactc 34060098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 33689265 - 33689175
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    |||||||| |||||||||| ||||||||||||  ||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  33689265 tcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatgtcacacaa 33689175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 51046122 - 51046208
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||||||||||||| ||||||||||||  ||| || |||| |||||| ||||| ||||||||||||||||||||||||||||    
T  51046122 tcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcaccaatgtcatccaactctatgtcac 51046208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 30734451 - 30734537
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| |||||||||||| |||| ||||||| |||||| ||||| |||||||||||| | |||||||||||||    
T  30734451 tcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 30734537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 55223321 - 55223231
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    |||||||| |||||||||| ||||||||| || |||| | | ||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  55223321 tcacaatgcttgtgaaagagagagaaacataagtattctaatattgtgattgaccaatatcaccaatgtcacctaactctatgtcacacaa 55223231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 47492096 - 47492187
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaac 214  Q
    |||||||| |||||||| | ||||||||||||  ||| ||||||| |||||| ||||||| |||||||||| ||||||||||||||| ||||    
T  47492096 tcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaatatgaccaatgtcacccaactctatgtcacccaac 47492187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 41753052 - 41752967
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||||||| | ||||||||||| ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  41753052 cacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 41752967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 29031763 - 29031826
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||| | ||||||||||||||||    
T  29031763 tcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaattgaccaatatcacc 29031826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 30580818 - 30580759
Alignment:
Q  150 cacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||||| ||||||||||||||  ||||||||||||||||| |||| ||||||||||    
T  30580818 cacaaatattgtgacattatgattggtcaatatcaccaatgtcacccaattctatgtcac 30580759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 43139762 - 43139844
Alignment:
Q  127 aatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||| |||||||||| ||||||||||||  ||| || |||| | |||| ||||| |||||||||||| |||||||||||||||    
T  43139762 aatgcttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcaccaatgtcacccaactctatgtcac 43139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 51046135 - 51046077
Alignment:
Q  150 cacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    |||||| ||| ||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  51046135 cacaaacattgtgacattatgattgatcaatgtcaccaatatcatccaactctatgtca 51046077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 30580805 - 30580890
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    ||||||| ||||||||||| | ||||||||||  | | ||||||| |||||||||||| |||| ||||||| |||| |||||||||    
T  30580805 tcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 45103160 - 45103112
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||||    
T  45103160 tgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcac 45103112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 18321740 - 18321657
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgt 206  Q
    ||||||||  ||||||| | ||| |||||||||  || ||||||| |||||||||||| |||||||| ||| ||||||||||||    
T  18321740 tcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcaccaatatcacccaactctatgt 18321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 47677304 - 47677367
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||| ||||||| |||| |||||    
T  47677304 tcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgatcaatgtcacc 47677367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 30476523 - 30476585
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcac 185  Q
    |||||||| |||||||||| ||||||||||||  ||| ||||||| |||||||||||| ||||    
T  30476523 tcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcac 30476585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 49418704 - 49418803
Alignment:
Q  95 tgacatagagttgagtgatatttgtcaatcacaatg--------tttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    ||||||||||||| |||||||| |||||||||||||        ||||||||||| ||||||||||||  ||| ||| ||||| |||||||||| |||||    
T  49418704 tgacatagagttgggtgatattggtcaatcacaatgtcataatatttgtgaaagagagagaaacacaagcattatgatattataattgaccaatgtcacc 49418803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 50524782 - 50524706
Alignment:
Q  132 ttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||  |||| ||| || | |||  |||||||||||||    
T  50524782 ttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatgtcatcattatcactcaactctatgtca 50524706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 1801496 - 1801558
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    ||||||| |||||||||| ||||||||||||| ||| || |||| |||||| ||||| |||||    
T  1801496 cacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 1801558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 50524791 - 50524837
Alignment:
Q  163 acattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||| |||||||| ||||||||||||||||  ||||||||||||||    
T  50524791 acattgtgattgactaatatcaccaatgtcactcaactctatgtcac 50524837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 1801494 - 1801449
Alignment:
Q  164 cattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  1801494 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 1801449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 49418753 - 49418717
Alignment:
Q  150 cacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  49418753 cacaaatattatgacattgtgattgaccaatatcacc 49418717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 36290427 - 36290542
Alignment:
Q  94 ttgacatagagttgagtgatatttgtcaatcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtca 193  Q
    |||||||||||||| |||| ||| | ||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||  ||||  |||||||||||    
T  36290427 ttgacatagagttgggtgacattggccaatcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtca 36290526  T
Q  194 tccaactctatgtcac 209  Q
     |||||||||||||||    
T  36290527 cccaactctatgtcac 36290542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 29179646 - 29179732
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  29179646 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 29179732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 48498495 - 48498418
Alignment:
Q  132 ttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||||| ||||||||||||| ||| ||  |||||||||||||||| |||| ||||||| |||||||||||||||    
T  48498495 ttgtgaaagagagagaaacacaaacattgtggtattatgattgaccaatgtcacaaatgtcacccaactctatgtcac 48498418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 9157400 - 9157309
Alignment:
Q  122 atcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    ||||||||| ||| |||||| ||||||||||||  ||| ||||||| ||||||  |||| | |||||||||| |||||||||||||||||||    
T  9157400 atcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaa 9157309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 1091593 - 1091679
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||| ||||||  |||  |||||||| ||| |||||||||||||||    
T  1091593 tcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcac 1091679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 32540797 - 32540883
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| | ||||| ||||||  |||| ||||||||||||||||| ||||||||||    
T  32540797 tcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcaccaatgtcatccaattctatgtcac 32540883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 37155135 - 37155049
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||  |||||||||| ||||||||||||  ||| ||||||| |||||| ||||| |||||||||||| | |||||||||||||    
T  37155135 tcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcac 37155049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 48993966 - 48994052
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| ||||||  |||| |||||||||||| |||||||||||||||    
T  48993966 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 48994052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 5995457 - 5995372
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||||||| ||||||||||||  ||| || |||| |||||| ||||| | |||||||||||| |||||||||||||    
T  5995457 cacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgttaccaatgtcatcaaactctatgtcac 5995372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 44706834 - 44706919
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||||||| ||||||||||||  |||  | |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  44706834 cacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 44706919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 47303484 - 47303421
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||  ||||||||||    
T  47303484 tcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatcacc 47303421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 4609085 - 4608995
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||| |||| |  |||| ||||| |||||| ||||||| || ||||||||    
T  4609085 tcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcaccgatgtcacccaactccatatcacacaa 4608995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 5694942 - 5695001
Alignment:
Q  127 aatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||| |||||||||| ||||||||||||||||| ||||||| | |||||||||| |||||    
T  5694942 aatgcttgtgaaagagagagaaacacaaatattgtgacattgtaattgaccaatgtcacc 5695001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 29371457 - 29371394
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||| |||||| ||||| |||||    
T  29371457 tcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcacc 29371394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 17127613 - 17127699
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| ||||||| ||||||  |||| |||| ||||||| | |||||||| ||||    
T  17127613 tcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcactaatgtcacctaactctatatcac 17127699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 45728372 - 45728294
Alignment:
Q  127 aatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatg 205  Q
    |||| |||||||||| ||||||||||||  ||| ||| ||| ||||||  ||||||||||||| ||| |||||||||||    
T  45728372 aatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcaccaatatcacccaactctatg 45728294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 21630118 - 21630045
Alignment:
Q  136 gaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||| ||||||||||||  ||| ||||||| ||||||  |||| |||||||||||| |||||| ||||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcac 21630045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 33219660 - 33219705
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgt 206  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||||    
T  33219660 tgacattgtgattgatcaatgtcaccaatgtcatccaactctatgt 33219705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 46932061 - 46932000
Alignment:
Q  148 aacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  46932061 aacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 46932000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 15220906 - 15220946
Alignment:
Q  169 tgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  15220906 tgattggccaatatcaccaatgtcacccaactctatgtcac 15220946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 38674554 - 38674615
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| ||||||||||  |||||||||||  ||| |||||||||||||| |||||||||||    
T  38674554 tcacaatgcttgtgaaaga--gagaaacacaagcattgtgacattatgattggccaatatcacc 38674615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 741551 - 741614
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||||||||| ||||||||||||  ||| ||||||| |||| ||||||| |||||    
T  741551 tcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatcgaccaatgtcacc 741614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 8337900 - 8337951
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattg 174  Q
    ||||||||||||||||||| ||||||||||||| ||| || |||| ||||||    
T  8337900 tcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattg 8337951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 2573236 - 2573277
Alignment:
Q  165 attatgattgaccaatatcaccaatgtcatccaactctatgt 206  Q
    |||||||||| ||||| |||||||| ||||||||||||||||    
T  2573236 attatgattggccaatgtcaccaatatcatccaactctatgt 2573277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 5995459 - 5995504
Alignment:
Q  164 cattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||| ||||||  |||| ||||||||||||||||||||||||||||    
T  5995459 cattgtgattggtcaatgtcaccaatgtcatccaactctatgtcac 5995504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 7788269 - 7788325
Alignment:
Q  95 tgacatagagttgagtgatatttgtcaatcacaatgtttgtgaaagaaagagaaaca 151  Q
    ||||||||||||| | ||| || |||||||| ||| ||||||||||| |||||||||    
T  7788269 tgacatagagttgggcgatgttggtcaatcataatatttgtgaaagagagagaaaca 7788325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 29371455 - 29371507
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    ||||||| ||||||  ||||||||||||||||| | | |||||||||||||||    
T  29371455 tgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaa 29371507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 48993968 - 48993920
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| ||||||  |||| |||||||||||| |||||||||||||||    
T  48993968 tgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 48993920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 30117877 - 30117962
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    ||||||||||| ||||| | ||||||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  30117877 tcacaatgtttatgaaaaagagagaaacacaagcattgtggcattatgattgaccaatatcaccaatgtcatccaactctatgtca 30117962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 39031186 - 39031285
Alignment:
Q  109 gtgatatttgtcaatcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||| ||| ||||||| || | |||||||||||| || |||||||||||    
T  39031186 gtgatattggtcaatcacaatgcttgtgaaagaaagagaaatacaaatattatgatattgtgattgatcagtgtcaccaatgtcaccccactctatgtca 39031285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 19655247 - 19655161
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||| ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  19655247 tcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 19655161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 3180109 - 3180198
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    ||||||||||||||||||| ||||||||||||  ||| || |||| |||||||||||| |||||||||| | |||||||||||| ||||||    
T  3180109 tcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcaccaatgtta-ccaactctatgtgacacaa 3180198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 12913890 - 12913942
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  12913890 tgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcacacaa 12913942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 291186 - 291100
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||||||||||||| | ||||| ||||  ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  291186 tcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 291100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 16439227 - 16439146
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctat 204  Q
    |||||||| |||||||||| ||||||||||||  ||| ||||||| |||||||||||| |||||||| | | ||||||||||    
T  16439227 tcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcaccaatattacccaactctat 16439146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 12913888 - 12913802
Alignment:
Q  127 aatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    |||| |||||||||| ||||| ||||||  ||| ||||||| |||||| ||||| ||||||||||||  ||||| ||||||||||||    
T  12913888 aatgcttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtcaccaatgtcactcaactatatgtcacacaa 12913802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 19598417 - 19598335
Alignment:
Q  127 aatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||| |||||||||| ||||||||||||  ||| ||  ||| |||||||||||| |||||||||| | |||||||||||||||    
T  19598417 aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcaccaatgttacccaactctatgtcac 19598335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 2356366 - 2356410
Alignment:
Q  169 tgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  2356366 tgattggccaatgtcaccaatgtcatccaactctatgtcacacaa 2356410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 28819006 - 28818943
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||||||||| ||||||| |||| |||| ||||||| |||||||||||| |||||    
T  28819006 tcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatgtcacc 28818943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 29699456 - 29699381
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaa 198  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||||||| ||||    
T  29699456 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 29699381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 2953277 - 2953325
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||| ||||| |||||||||||| |||||||||||||||    
T  2953277 tgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 2953325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 28819004 - 28819052
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||||||||||||||| |||||||| |||  ||||||||||||||    
T  28819004 tgacattatgattgaccaatgtcaccaatatcactcaactctatgtcac 28819052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 291173 - 291232
Alignment:
Q  150 cacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||| ||| ||||||| ||||||| |||| |||||||||||| |||||||||| ||||    
T  291173 cacaaacattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatatcac 291232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 16802533 - 16802470
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||| ||||| ||||||||||||||||| | ||||| |||||| ||||| |||||    
T  16802533 tcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtcacc 16802470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 7009423 - 7009452
Alignment:
Q  169 tgattgaccaatatcaccaatgtcatccaa 198  Q
    ||||||||||||||||||||||||||||||    
T  7009423 tgattgaccaatatcaccaatgtcatccaa 7009452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 2093988 - 2093940
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| ||||||| |||| |||||||| ||| |||||||||||||||    
T  2093988 tgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcac 2093940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 16971231 - 16971279
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| ||||||  |||| |||||||||||| |||||||||||||||    
T  16971231 tgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 16971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 29699454 - 29699502
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||| ||||| |||||||| ||| |||||||||||||||    
T  29699454 tgacattgtgattggccaatgtcaccaatatcacccaactctatgtcac 29699502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 30117879 - 30117831
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| ||||||  ||||||||||||||||| |||||||||| ||||    
T  30117879 tgacattgtgattggtcaatatcaccaatgtcacccaactctatatcac 30117831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 32485644 - 32485688
Alignment:
Q  169 tgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    ||||||| |||| |||||||||||| |||||||| ||||||||||    
T  32485644 tgattgatcaatgtcaccaatgtcacccaactctgtgtcacacaa 32485688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 10086846 - 10086760
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||| |||| ||||||| |||| ||||||||||    
T  10086846 tcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcactaatgtcacccaattctatgtcac 10086760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 5667182 - 5667100
Alignment:
Q  127 aatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||| |||||||||| ||||||| ||||  ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  5667182 aatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcac 5667100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 34229731 - 34229640
Alignment:
Q  122 atcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    ||||||||| |||||||||| ||||||||||||  ||| ||||||| ||||||||  || |||| ||||||| |||||||||||||||||||    
T  34229731 atcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattgactcatgtcactaatgtcacccaactctatgtcacacaa 34229640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 8796511 - 8796425
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| ||||||| ||||||||||||||||| ||| ||| | |||||||||||||    
T  8796511 tcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaatatcacaaatatcacctaactctatgtcac 8796425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 35441018 - 35441104
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  35441018 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 35441104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 43844538 - 43844604
Alignment:
Q  143 agagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||||||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  43844538 agagaaacacaagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcac 43844604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 8243438 - 8243523
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||||||| ||||||||||||  ||| || |||| |||||||||||  |||||||||||| |||||||||||||||    
T  8243438 cacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcac 8243523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 5033250 - 5033164
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| ||||||  |||| |||||||||||| |||||||||||||||    
T  5033250 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 5033164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 33841640 - 33841726
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| ||||||  |||| |||||||||||| |||||||||||||||    
T  33841640 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtcaccaatgtcacccaactctatgtcac 33841726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 45191177 - 45191262
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| || ||||||| ||||||||||||| ||| | ||||| ||||||  |||| |||||||| |||||||||||||||||||    
T  45191177 cacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcaccaatatcatccaactctatgtcac 45191262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 4958688 - 4958599
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    |||||||  |||||||||| ||||||||||||| ||| ||||||| |||||| ||||| ||| |||| ||| | || ||||||||||||||    
T  4958688 tcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtcatcaatatca-caaattctatgtcacacaa 4958599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 6296681 - 6296740
Alignment:
Q  150 cacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||| |||| ||||||||| |||||| ||| |||| |||||||||||||||||| ||||    
T  6296681 cacaagtattgtgacattataattgactaatgtcactaatgtcatccaactctatatcac 6296740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 43844522 - 43844475
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    ||||||||||||| |||||||||| |||| ||| ||||||||||||||    
T  43844522 tgacattatgattaaccaatatcatcaatatcacccaactctatgtca 43844475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 10086833 - 10086891
Alignment:
Q  150 cacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    |||||| ||| ||||||| ||||||  |||| |||||||||||| ||||||||||||||    
T  10086833 cacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 5033248 - 5033296
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| ||||||  |||| |||||||||||| |||||||||||||||    
T  5033248 tgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 5033296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 5667184 - 5667232
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| | |||| ||||| |||||||||||||| |||||||||||||    
T  5667184 tgacattgtaattggccaatgtcaccaatgtcatcaaactctatgtcac 5667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 7096 - 7185
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    |||||||| |||||||||| ||||||||||||  ||| ||||||| |||||| ||||| |||||||||||| |||||||||||||||||||    
T  7096 tcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtca-ccaactctatgtcacacaa 7185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 7098 - 7048
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacac 211  Q
    ||||||| |||||| | |||||||||||||||| |||||||||||||||||    
T  7098 tgacattgtgattggctaatatcaccaatgtcacccaactctatgtcacac 7048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 11016958 - 11016872
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||||||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  11016958 tcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 11016872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 34854745 - 34854830
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||||||| | ||||||||||| ||| || |||| |||||||||||| |||||||||||| |||||||||||||||    
T  34854745 cacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaactctatgtcac 34854830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 38975893 - 38975808
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||||||| ||||||||||||  ||| || |||| |||||||||||| | |||||||||| |||||||||||||||    
T  38975893 cacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgttaccaatgtcacccaactctatgtcac 38975808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 4290634 - 4290548
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||  |||||||||| |||||||||| |  ||| || |||| ||||||||||||||||||||| ||| |||||||||||||||    
T  4290634 tcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcaccaatatcacccaactctatgtcac 4290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 22764753 - 22764819
Alignment:
Q  127 aatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtca 193  Q
    |||| |||||||||| ||||||||||||| ||| ||||||| |||||| ||||||||||||||||||    
T  22764753 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcaccaatgtca 22764819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 27028842 - 27028928
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| || ||||||| ||||||||||||| ||| ||||||| |||||||||||| |||||||  ||| |||| ||||||||||    
T  27028842 tcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattgaccaatgtcaccaacatcacccaagtctatgtcac 27028928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 45231867 - 45231985
Alignment:
Q  95 tgacatagagttgagtgatatttgtcaatcacaatg----tttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatg 190  Q
    ||||||||||||| |||| |||   |||||||||||    ||||||||||| ||||||||| ||  ||| | ||||| |||||| ||||| |||||||||    
T  45231867 tgacatagagttgggtgacattgaccaatcacaatgccactttgtgaaagagagagaaacaaaagcattgtaacattgtgattggccaatgtcaccaatg 45231966  T
Q  191 tcatccaactctatgtcac 209  Q
    ||| |||||||||||||||    
T  45231967 tcacccaactctatgtcac 45231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 30217504 - 30217592
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    ||||||| |||||||||| ||||||||| ||| ||||||| ||| |||||| | ||| ||| |||||||| | |||||||||||||||||    
T  30217504 cacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtcatcaatgtca-caaactctatgtcacacaa 30217592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 15027631 - 15027548
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgt 206  Q
    |||||||| |||||||||| ||||||||||||| ||| ||  ||| ||||||  |||| ||||||||||||  |||||||||||    
T  15027631 tcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcaccaatgtcaaacaactctatgt 15027548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 41018280 - 41018363
Alignment:
Q  126 caatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||| |||||||||| ||||||||| ||  ||| || |||| ||||||  |||| |||||||||||| |||||||||||||||    
T  41018280 caatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 41018363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 42628383 - 42628430
Alignment:
Q  162 gacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||| |||||| |||||||||||||||||| |||||||||||||||    
T  42628383 gacattgtgattggccaatatcaccaatgtcacccaactctatgtcac 42628430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 10419538 - 10419485
Alignment:
Q  132 ttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcac 185  Q
    |||||||||| |||||||||||| |||| | |||||||||||||||||| ||||    
T  10419538 ttgtgaaagagagagaaacacaagtattgtaacattatgattgaccaatgtcac 10419485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 11016945 - 11017004
Alignment:
Q  150 cacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||| ||| ||||||| ||||||  |||| |||||||||||| |||||||||||||||    
T  11016945 cacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 11017004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 41945942 - 41945859
Alignment:
Q  125 acaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    |||||| |||||||||| | | |||| |||| ||| |||||||||||||||| ||| ||| ||||||||  ||| |||||||||    
T  41945942 acaatgcttgtgaaagagaaaaaaacgcaaacattatgacattatgattgactaatgtcatcaatgtcactcaattctatgtca 41945859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 7671961 - 7672023
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    ||||||| |||||||||| ||||||||||||| ||| || |||| |||||| ||||| |||||    
T  7671961 cacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 7672023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 4290632 - 4290680
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||| ||||| |||||||||||| |||||| ||||||||    
T  4290632 tgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcac 4290680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 27028795 - 27028731
Alignment:
Q  145 agaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||||  ||| ||||||| |||||| ||||| ||||||||||||  ||||| ||||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcac 27028731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 29053366 - 29053426
Alignment:
Q  126 caatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    ||||| |||||||||| ||||||||||||| ||| || |||| |||||| ||||| |||||    
T  29053366 caatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 29053426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 48000825 - 48000769
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaat 180  Q
    |||||||| ||||||||| ||||||||||||| ||| || |||| |||||| |||||    
T  48000825 cacaatgtctgtgaaagagagagaaacacaaacattgtggcattgtgattggccaat 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 213
Target Start/End: Complemental strand, 17750991 - 17750902
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    |||||||| |||||||||| ||| ||| ||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  17750991 tcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtcaccaatgtcat-caactctatgtcacacaa 17750902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 551215 - 551300
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||||||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||| |||||||| ||||||||||    
T  551215 cacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaattctatgtcac 551300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 24587550 - 24587464
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||| |  |||||||||||  ||| ||||||| |||||||||||| |||| ||||||| |||||||||||||||    
T  24587550 tcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcac 24587464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 13043547 - 13043480
Alignment:
Q  122 atcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaat 189  Q
    ||||||||| |||||||||| ||||||||||||  ||| |||||||  |||||||||||||| |||||    
T  13043547 atcacaatgcttgtgaaagagagagaaacacaagcattgtgacatttcgattgaccaatatcgccaat 13043480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 24975800 - 24975755
Alignment:
Q  164 cattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||    
T  24975800 cattgtgattgaccaatgtcaccaatgtcagccaactctatgtcac 24975755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 24618652 - 24618604
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| ||||||| |||| |||||||||||| |||||||||||||||    
T  24618652 tgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 24618604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 10521898 - 10521960
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcac 185  Q
    |||||||| || ||||||| ||||||||||||  ||| ||||||| |||||||||||| ||||    
T  10521898 tcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgattgaccaatgtcac 10521960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 31654389 - 31654331
Alignment:
Q  128 atgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||||||||| ||||||||||||  ||| ||||||| |||||| ||||| |||||    
T  31654389 atgtttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacc 31654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 10521974 - 10521938
Alignment:
Q  95 tgacatagagttgagtgatatttgtcaatcacaatgt 131  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  10521974 tgacatagagttgagtgacattggtcaatcacaatgt 10521938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 30861820 - 30861909
Alignment:
Q  120 caatcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||||| |||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||| |||||||||||||||||||    
T  30861820 caatcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcac 30861909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 23444318 - 23444404
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  23444318 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 23444404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 35682255 - 35682169
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| |||||||||||| |||| ||||||| |||||| ||||| |||||||| ||| | |||||||||||||    
T  35682255 tcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcaccaatatcacctaactctatgtcac 35682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 51265534 - 51265448
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  51265534 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 51265448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 38714912 - 38714849
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||| |||||| |||||||||||    
T  38714912 tcacaatgtttgtgaaagaaatagaaacataaatattatgacattgtgattggccaatatcacc 38714849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 6271791 - 6271705
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||| ||| |||||||||||||||    
T  6271791 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcacccaactctatgtcac 6271705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 40789268 - 40789203
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaa 188  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||| |||||| ||||| |||||||    
T  40789268 tcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcaccaa 40789203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 5048887 - 5048934
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  5048887 tgacattatgattgaccaatgtcatcaatgtcacccaactctatgtca 5048934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 47661931 - 47661856
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaa 198  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| |||||| ||||| |||||||||||| ||||    
T  47661931 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 47661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 52028638 - 52028575
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||  |||||| |||||||||||    
T  52028638 tcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatcacc 52028575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 55090009 - 55090107
Alignment:
Q  95 tgacatagagttgagtgatatttgtcaatcacaatgt--------ttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcac 185  Q
    |||||||||||||||||| ||| ||||||||||||||        |||||||||| ||||| ||||||  ||| ||||||| |||||||||||| ||||    
T  55090009 tgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgattgaccaatgtcac 55090107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 42375097 - 42375145
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| ||||||| |||| |||||||||||| |||||||||||||||    
T  42375097 tgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 42375145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 26186065 - 26186149
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| ||||||||||  |||||||||||  ||| ||| ||| |||||| ||||| ||| |||||| | |||||||||||||||    
T  26186065 tcacaatgcttgtgaaaga--gagaaacacaagcattgtgaaattgtgattggccaatgtcatcaatgttacccaactctatgtcac 26186149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 42375099 - 42375036
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||| |||||||||||| |||||    
T  42375099 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcacc 42375036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 3862619 - 3862681
Alignment:
Q  147 aaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||  ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  3862619 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3862681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 3871376 - 3871438
Alignment:
Q  147 aaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||  ||| || |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  3871376 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3871438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 28693971 - 28694004
Alignment:
Q  122 atcacaatgtttgtgaaagaaagagaaacacaaa 155  Q
    |||||||||||||||||||| |||||||||||||    
T  28693971 atcacaatgtttgtgaaagagagagaaacacaaa 28694004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 30709987 - 30710035
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||| ||||| |||||||||||| | |||||||||||||    
T  30709987 tgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 30710035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 41306669 - 41306637
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtca 193  Q
    |||||||||| ||||||||||||||||||||||    
T  41306669 tgacattatggttgaccaatatcaccaatgtca 41306637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 47661929 - 47661977
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| ||||||  |||| |||||||||||| |||||||||||||||    
T  47661929 tgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 47661977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 51265532 - 51265580
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||||||||  |||| |||||||||||| ||||||||| |||||    
T  51265532 tgacattatgattggtcaatgtcaccaatgtcacccaactctaagtcac 51265580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 55089890 - 55089926
Alignment:
Q  95 tgacatagagttgagtgatatttgtcaatcacaatgt 131  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  55089890 tgacatagagttgagtgacattggtcaatcacaatgt 55089926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 55090121 - 55090085
Alignment:
Q  95 tgacatagagttgagtgatatttgtcaatcacaatgt 131  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  55090121 tgacatagagttgagtgacattggtcaatcacaatgt 55090085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 15011369 - 15011294
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaa 198  Q
    |||||||| |||||||||| ||||||||||||| ||| || |||| |||||| |||||||||||||||||| ||||    
T  15011369 tcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcaccaatgtcacccaa 15011294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 16514513 - 16514427
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||| |||||||||| ||||||||||||  ||| || |||  |||||| ||||| |||||||||||| |||||||||||||||    
T  16514513 tcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcaccaatgtcacccaactctatgtcac 16514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 9173044 - 9173116
Alignment:
Q  137 aaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||||||||| ||||  ||| || |||| |||||| |||||||||||||||||| |||||||||||||||    
T  9173044 aaagaaagagaaatacaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatgtcac 9173116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 6722040 - 6721965
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaa 198  Q
    ||||||||||||||||||| ||||||||||||  ||| ||| ||| ||||||  |||| |||||||||||||||||    
T  6722040 tcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtcaccaatgtcatccaa 6721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 33018632 - 33018679
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtca 208  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  33018632 tgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 29508741 - 29508826
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||||||| ||||||||||||  |||  | |||| |||||| ||||| |||||||| ||| |||||||||||||||    
T  29508741 cacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatatcacccaactctatgtcac 29508826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 6722027 - 6722086
Alignment:
Q  150 cacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||| ||| ||||||| |||||| |||||||||| ||||||| |||||||||||||||    
T  6722027 cacaaacattgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcac 6722086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 24116008 - 24116059
Alignment:
Q  162 gacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    |||||| ||||||||||||||||| |||| || |||||||||||||||||||    
T  24116008 gacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaa 24116059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 14892349 - 14892395
Alignment:
Q  163 acattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  14892349 acattgtgattgatcaatgtcaccaatgtcatccaactctatgtcac 14892395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 14229404 - 14229356
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||||||||| |||||||||||| | |||||||||||||    
T  14229404 tgacattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcac 14229356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 14470644 - 14470716
Alignment:
Q  126 caatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaa 198  Q
    ||||| |||||||||| ||||||||||||| ||| ||||||| |||||| | ||| | |||||| ||||||||    
T  14470644 caatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggctaatgttaccaatatcatccaa 14470716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 38933674 - 38933722
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||||||||| ||||  |||||||||||| |||||||||||||||    
T  38933674 tgacattatgattggccaacgtcaccaatgtcacccaactctatgtcac 38933722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 2828673 - 2828610
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| || ||||||| ||||||||||||  ||||||||||| |||||| ||||| |||||    
T  2828673 tcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcacc 2828610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 6217274 - 6217336
Alignment:
Q  124 cacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    ||||||| |||||||||| ||||||||||||| ||| || |||| |||||| ||||| |||||    
T  6217274 cacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 6217336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 8534235 - 8534165
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtca 193  Q
    |||||||  |||||||| | ||||||||||||||||||| ||||| | ||||| |||| ||| ||||||||    
T  8534235 tcacaattcttgtgaaatagagagaaacacaaatatttttacattgtaattgatcaatgtcatcaatgtca 8534165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 14470641 - 14470591
Alignment:
Q  163 acattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    ||||| ||||||  |||| |||||||||||| |||||||||||||||||||    
T  14470641 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaa 14470591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 6217272 - 6217227
Alignment:
Q  164 cattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||| |||||| ||||| |||||||||||| |||||||||||||||    
T  6217272 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 6217227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 14464568 - 14464604
Alignment:
Q  95 tgacatagagttgagtgatatttgtcaatcacaatgt 131  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  14464568 tgacatagagttgagtgacattggtcaatcacaatgt 14464604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 32545875 - 32545923
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||||||||| ||||| ||||||||||||   |||||||||||||    
T  32545875 tgacattatgattggccaatgtcaccaatgtcactaaactctatgtcac 32545923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 27278 - 27355
Alignment:
Q  132 ttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    |||||||||| ||||||||| ||  ||| || |||| |||||| |||||||||||||||||| |||||||||| ||||    
T  27278 ttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatatcac 27355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 27271 - 27223
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcac 209  Q
    ||||||| |||||| |||||||||| ||||||| |||||||||||||||    
T  27271 tgacattgtgattggccaatatcactaatgtcacccaactctatgtcac 27223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 19173 - 19121
Alignment:
Q  161 tgacattatgattgaccaatatcaccaatgtcatccaactctatgtcacacaa 213  Q
    ||||||| ||||||| |||||||| |||||||| |||||||||||||||||||    
T  19173 tgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcacacaa 19121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 63846 - 63783
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||||||||| ||||||||||||| ||| || |||| |||||| ||||| |||||    
T  63846 tcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacc 63783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 49752 - 49815
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaatattttgacattatgattgaccaatatcacc 186  Q
    |||||||| |||||||||||||||||||||||  ||| || |||| |||||| ||||| |||||    
T  49752 tcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatgtcacc 49815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 2936 - 2968
Alignment:
Q  123 tcacaatgtttgtgaaagaaagagaaacacaaa 155  Q
    ||||||||||||||||||| |||||||||||||    
T  2936 tcacaatgtttgtgaaagagagagaaacacaaa 2968  T

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