View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19969_low_14 (Length: 308)
Name: NF19969_low_14
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19969_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 31995502 - 31995224
Alignment:
| Q |
12 |
tattctagcttgcagttcagttggcaggttggcatatatagggcatataattaactcgtctaatttagtccccaaacctctcatctgatacttcaggttt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31995502 |
tattctagcttgcagttcagttggcaggttggcatatatagggcatataattaactcatctaatttagtccccaaacctctcatctgatacttcaggttt |
31995403 |
T |
|
| Q |
112 |
tcttctacgctttcaatttcttcttgaccagcaaggaataccaatatatctccaggaggttgagtggcatggatttgaagcgttgtgacaatagcagcat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31995402 |
tcttctacgctttcaatttcttcttgaccagcaaggaataccaatatatctccaggaggttgagtggcatggatttgaagcgttgtgacaatagcagcat |
31995303 |
T |
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| Q |
212 |
ccatgtagttagatactgctgttttggagtagtgtatttcaacaggataccgtctcccaggaattttgaatattggagc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31995302 |
ccatgtagttagatactgctgttttggagtagtgtatttcaacaggataccgtctcccaggaattttgaatattggagc |
31995224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 15841952 - 15841674
Alignment:
| Q |
12 |
tattctagcttgcagttcagttggcaggttggcatatatagggcatataattaactcgtctaatttagtccccaaacctctcatctgatacttcaggttt |
111 |
Q |
| |
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|||| ||||||| |||||||||| ||||||||||||||||| ||||||||||| || ||| |||||| || |||| ||||||| ||| ||||||| || |
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| T |
15841952 |
tattttagcttgtggttcagttggtaggttggcatatataggacatataattaattcagctattttagttcctaaacgtctcatccgatgcttcaggatt |
15841853 |
T |
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| Q |
112 |
tcttctacgctttcaatttcttcttgaccagcaaggaataccaatatatctccaggaggttgagtggcatggatttgaagcgttgtgacaatagcagcat |
211 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15841852 |
tcttctacggtttcaatttcttcttgaccactaaggaataccaatatttctctgggagattgagtggcatggatttgaagcgttgtgacaatagcagcat |
15841753 |
T |
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| Q |
212 |
ccatgtagttagatactgctgttttggagtagtgtatttcaacaggataccgtctcccaggaattttgaatattggagc |
290 |
Q |
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||| ||||| || | ||| || ||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15841752 |
ccaagtagtcagcttctggtgcttttgtgaagtgtatttcaactggataccgtctcccaggaattttgaatattggagc |
15841674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 24009954 - 24009684
Alignment:
| Q |
12 |
tattctagcttgcagttcagttggcaggttggcatatatagggcatataattaactcgtctaatttagtccccaaacctctcatctgatacttcaggttt |
111 |
Q |
| |
|
|||| ||||||| | ||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||| ||| || | || |||||| | | |
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| T |
24009954 |
tattttagcttgtatttcagttggtaggttggcatatataggacatataattaactcagctattttagtccccaaggctcccacccgaagcttcagatgt |
24009855 |
T |
|
| Q |
112 |
tcttctacgctttcaatttcttcttgaccagcaaggaataccaatatatctccaggaggttgagtggcatggatttgaagcgttgtgacaatagcagcat |
211 |
Q |
| |
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|||||| || ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| |||||| |||||||| || ||||||||||||| |
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| T |
24009854 |
tcttctgcggtttcaatttcttcttgaccagtaaggaatagcaatatatctccgggaggttgagtggtatggatctgaagcgtcgtaacaatagcagcat |
24009755 |
T |
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| Q |
212 |
ccatgtagttagatactgctgttttggagtagtgtatttcaacaggataccgtctcccaggaattttgaat |
282 |
Q |
| |
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| | |||||| | | ||||| ||| | | ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
24009754 |
caaagtagttggcttctgctttttccgtgaagtgtatttcaacaggatatggtctcccaggaatttcgaat |
24009684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 7287747 - 7287469
Alignment:
| Q |
12 |
tattctagcttgcagttcagttggcaggttggcatatatagggcatataattaactcgtctaatttagtccccaaacctctcatctgatacttcaggttt |
111 |
Q |
| |
|
|||| |||| || ||||||||||| ||||||||||||||||| ||||||||||| || | | ||||||||| || ||||| | ||| ||||| | || |
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| T |
7287747 |
tattttagcctgtagttcagttggtaggttggcatatataggacatataattaattcagcaattttagtccctaagcctctagttcgatgcttcaagatt |
7287648 |
T |
|
| Q |
112 |
tcttctacgctttcaatttcttcttgaccagcaaggaataccaatatatctccaggaggttgagtggcatggatttgaagcgttgtgacaatagcagcat |
211 |
Q |
| |
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||||| | |||| |||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| | ||| |||||||| |||| |
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| T |
7287647 |
tcttcagccgtttcgatttcttcttgaccagtaaggaatattaatatatctccaggaggttgagtaacatggatttgaagtgctgttacaatagctgcat |
7287548 |
T |
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| Q |
212 |
ccatgtagttagatactgctgttttggagtagtgtatttcaacaggataccgtctcccaggaattttgaatattggagc |
290 |
Q |
| |
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| | ||||| || | ||| || ||||| ||||||||||||| ||||||| |||||| |||||||||||||| ||||| |
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| T |
7287547 |
ctaagtagtcagcttctggtgctttggtaaagtgtatttcaactggataccttctccctggaattttgaatatcggagc |
7287469 |
T |
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