View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19969_low_15 (Length: 292)
Name: NF19969_low_15
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19969_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 52 - 285
Target Start/End: Original strand, 36617954 - 36618187
Alignment:
| Q |
52 |
acagagaacaaaaggaatatagggcagccaccagatttttgctgggcctcttggtaggcagcatcaagcttcttgttgccattttgagtgctcgcccaca |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36617954 |
acagagaacaaaaggaatatagggcagccaccagatttttgctgggcctcttggtaggcagcatcaagcttcttgttgccattttgagtgctggcccaca |
36618053 |
T |
|
| Q |
152 |
cattatacttgatgcttttatgaatgtcatcctcgctgtaagacttgatgacaaaaaatttagcatcggtgtattcttctggaaaatcagccgtgttata |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36618054 |
cattatacttgatgcttttatgaatgtcatcctcgctgtaagacttgatgacaaaaaatttagcatcggtgtattcttctggaaaatcagccttgttata |
36618153 |
T |
|
| Q |
252 |
ttgttcacggtctggagtagtactattcttctct |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36618154 |
ttgttcacggtctggagtagtactattcttctct |
36618187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36617821 - 36617873
Alignment:
| Q |
1 |
tcaacaggaccagtcatctctgctagcccaacaaattgtccactggtattaac |
53 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36617821 |
tcaacaggaccggtcatctctgctagcccaacaaattgtccactggtattaac |
36617873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 10207979 - 10207870
Alignment:
| Q |
109 |
gcagcatcaagcttcttgttgccattttgagtgctcgcccacacattatacttgatgcttttatgaatgtcatcctcgctgtaagacttgatgacaaaaa |
208 |
Q |
| |
|
|||||||| || |||||||||||||| | || || | |||||||||||| || || || || || || |||||||| || ||||| ||||||||||||| |
|
|
| T |
10207979 |
gcagcatctagtttcttgttgccattaggggtacttgtccacacattatatttcatactcttgtggatatcatcctcactataagatttgatgacaaaaa |
10207880 |
T |
|
| Q |
209 |
atttagcatc |
218 |
Q |
| |
|
| || ||||| |
|
|
| T |
10207879 |
actttgcatc |
10207870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University