View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19969_low_17 (Length: 280)
Name: NF19969_low_17
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19969_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 52 - 263
Target Start/End: Original strand, 24044659 - 24044870
Alignment:
| Q |
52 |
actattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatcttttaattttaaagtaatgttg |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24044659 |
actattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatcttttaattttaaagtaatgttg |
24044758 |
T |
|
| Q |
152 |
attgatgtttcaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacagatgtattgatacaattccatcgatatggatcttgattaa |
251 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24044759 |
attgatgtttgaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacagatgtattgatacaattccatcgatatggatcttgattaa |
24044858 |
T |
|
| Q |
252 |
ttagctttttgt |
263 |
Q |
| |
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|||||||||||| |
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| T |
24044859 |
ttagctttttgt |
24044870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 58 - 250
Target Start/End: Original strand, 24052836 - 24053039
Alignment:
| Q |
58 |
caaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatctttt-----------aattttaaagtaa |
146 |
Q |
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|||||||||||||| || ||||||| |||| |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
24052836 |
caaaccacagataccgcctaaatgttcattggttaggaatataatattttcccaacttaaattaatttaatctgttttttccatggaaattttaaagtaa |
24052935 |
T |
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| Q |
147 |
tgttgattgatgtttcaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacagatgtattgatacaattccatcgatatggatcttg |
246 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
24052936 |
tgttgattgttgtttgaaatggtcatcagaaagaaatttaaagtaaagttagaaaatttgaaacagatgtattgatacaattccctcaatatggatcttg |
24053035 |
T |
|
| Q |
247 |
atta |
250 |
Q |
| |
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|||| |
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| T |
24053036 |
atta |
24053039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 58 - 250
Target Start/End: Original strand, 24049693 - 24049896
Alignment:
| Q |
58 |
caaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatctttt------------aattttaaagta |
145 |
Q |
| |
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|||||||||||||| || ||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24049693 |
caaaccacagataccgcctaaatgttcattggttaggagtataatattttcccaacttaaattaatttaatctttttttttccatggaaattttaaagta |
24049792 |
T |
|
| Q |
146 |
atgttgattgatgtttcaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacagatgtattgatacaattccatcgatatggatctt |
245 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| |||||||||| || ||||||||||| |
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| T |
24049793 |
atgttgattgatgtttgaaatggtcatcagaaa-aaatttaaagtactgttagaaaatttgaaacagatgtattcatacaattccctcaatatggatctt |
24049891 |
T |
|
| Q |
246 |
gatta |
250 |
Q |
| |
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||||| |
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|
| T |
24049892 |
gatta |
24049896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 24106419 - 24106509
Alignment:
| Q |
38 |
acagttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaacttaaattaatttaatc |
129 |
Q |
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|||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
24106419 |
acagttctaaggccac-attcaaaccacagacacggcagaaatgttgattgattaggaatataatattttcttaactaaaattaatttaatc |
24106509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 24102191 - 24102266
Alignment:
| Q |
40 |
agttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaactt |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| ||||||||| ||||| |
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| T |
24102191 |
agttctaaggccacgattcaaaccacagataccgcggaaatgttgattgattacgaatataatattttcctaactt |
24102266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 4261242 - 4261164
Alignment:
| Q |
37 |
aacagttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaactt |
115 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
4261242 |
aacagttctaaggccaccattcaaaccatagataccgcagaaatgttgattgattaggaatatagtattttcctaactt |
4261164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 4301026 - 4300967
Alignment:
| Q |
40 |
agttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatat |
99 |
Q |
| |
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|||||||| ||||| |||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
4301026 |
agttctaaagccaccattcaaaccacagatacttctgaaatgttgattgattaggaatat |
4300967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 4267983 - 4267934
Alignment:
| Q |
163 |
aaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaaacag |
212 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
4267983 |
aaatggtcatcagacagaaatttaaagtaatgttagaaaatttgaaacag |
4267934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 4268115 - 4268040
Alignment:
| Q |
40 |
agttctaaggccactattcaaaccacagatactgcagaaatgttgattgattaggaatattatattttcccaactt |
115 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| || | |||||||||||||||| ||||| ||||||||| ||||| |
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| T |
4268115 |
agttctaaggccaccattcaaacaatagataccgcggcaatgttgattgattagaaatataatattttcctaactt |
4268040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 4261106 - 4261046
Alignment:
| Q |
134 |
aattttaaagtaatgttgattgatgtttcaaatggtcatcagaaagaaatttaaagtaatttt |
196 |
Q |
| |
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||||||||||||||||| | ||| ||| |||||||||||||| ||||||||||||||||||| |
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| T |
4261106 |
aattttaaagtaatgttta--gatatttgaaatggtcatcagacagaaatttaaagtaatttt |
4261046 |
T |
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