View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19969_low_18 (Length: 252)
Name: NF19969_low_18
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19969_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 45067402 - 45067648
Alignment:
| Q |
1 |
taatcaatccgtgcaaagaataatgagtcaaatccaacctatgccaacaagggtagtgcttaagaaacaagtnnnnnnntgtgtgaaaaaatgaatagac |
100 |
Q |
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| T |
45067402 |
taatcaatccgtgcaaagaataatgagtcaaatccaacctatgccaacaagggtagtgcttaagaaacaagtaaaaaaatgtgtgaaaaaatgaatagac |
45067501 |
T |
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| Q |
101 |
ttataggcaaatcaacttcaaaatcattctttttctcatcatcaaatttatatgtttcttacaatttaacaaaatggtacctctgctcccaacaagtagg |
200 |
Q |
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| T |
45067502 |
ttataggcaaatcaacttcaaaatcattctttttctcatcatcaaatttatatgtttcttacaatttaacaaaatggtacctctgctcccaacaagtagg |
45067601 |
T |
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| Q |
201 |
cctgcactgcagaatgtccaaatggatcaatttgccatcatattctt |
247 |
Q |
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| T |
45067602 |
cctgcactgcagaatgtccaaatggatcaatttgccatcctattctt |
45067648 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 32399827 - 32399896
Alignment:
| Q |
168 |
aacaaaatggtacctctgctcccaacaagtaggcctgcactgcagaatgtccaaatggatcaatttgcca |
237 |
Q |
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| T |
32399827 |
aacaatatcgtacctcagctccaagcaagtaagcctgaactgcagaatggccaaacggatcaatctgcca |
32399896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 32385484 - 32385536
Alignment:
| Q |
185 |
gctcccaacaagtaggcctgcactgcagaatgtccaaatggatcaatttgcca |
237 |
Q |
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| T |
32385484 |
gctcccaataaataagcctgcacagcagaatgtccaaacgggtcaatttgcca |
32385536 |
T |
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