View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19969_low_19 (Length: 240)
Name: NF19969_low_19
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19969_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 2935626 - 2935839
Alignment:
| Q |
13 |
acattgctcaataacgttttagtagatatgtattttacaagtgttcctcaagtattactactctcatgatgccataaatatatatggtgtgtgttcaagt |
112 |
Q |
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| T |
2935626 |
acattgctcaataacgttttagtagatacgtattttacaagtgttcctcaagtattactactctcatgatgccataaatatatatggtgtgtgttcaagt |
2935725 |
T |
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| Q |
113 |
gttctctagacaatttaccttgaacttgataaaagtttgttatatgttgtttgcattcattggctttgtaagaagtatttgtgttgtgtgatcaaatata |
212 |
Q |
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| T |
2935726 |
gttctctagacaatttaccttgaacttgataaaagtttgttatatgttgtttg----tattgactttgtaagaagtattggtgttgtgtgatcaaatata |
2935821 |
T |
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| Q |
213 |
aaactactatgctctgtg |
230 |
Q |
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| T |
2935822 |
aaactactatgctttgtg |
2935839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 2920815 - 2920891
Alignment:
| Q |
153 |
tatatgttgtttgcattcattggctttgtaagaagtatttgtgttgtgtgatcaaatataaaactactatgctctgtg |
230 |
Q |
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| T |
2920815 |
tatatgttgtttgcattcattagctttgtatgaagta-ttgtattgtgtgatcaaatataaaattactatgctttgtg |
2920891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 2920761 - 2920812
Alignment:
| Q |
84 |
ccataaatatatatggtgtgtgttcaagtgttctctagacaatttaccttga |
135 |
Q |
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| T |
2920761 |
ccataaatatatatgttgtgtgttcaagtgttctccaaacattttaacttga |
2920812 |
T |
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