View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19969_low_2 (Length: 468)

Name: NF19969_low_2
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19969_low_2
NF19969_low_2
[»] chr1 (12 HSPs)
chr1 (1-468)||(13085598-13086055)
chr1 (378-468)||(13271444-13271534)
chr1 (295-468)||(13081109-13081282)
chr1 (328-468)||(12964119-12964259)
chr1 (324-468)||(13244765-13244909)
chr1 (408-468)||(19279412-19279472)
chr1 (329-468)||(30368352-30368491)
chr1 (363-468)||(13094242-13094347)
chr1 (329-468)||(13070420-13070559)
chr1 (363-468)||(13129671-13129776)
chr1 (363-468)||(13161364-13161469)
chr1 (363-467)||(13010616-13010720)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 13085598 - 13086055
Alignment:
Q  1 actatagaaacatagagaatttgtaataaattgacaaagataaagaattcctaggaatttcttaataaagactagaataaattattatctaatataagat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  13085598 actatagaaatatagagaatttgtaataaattgacaaagataaagaattcctaggaatttcttaataaagactagaataaattat---ctaatataagat 13085694  T
Q  101 ggaatacataaccctttttatatatccaaagtgtagttagatagagaattaaccgaaaataaaccaaattgaataccggtattatnnnnnnnccaaggat 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  13085695 ggaatacataaccctttttatatatccaaagtgtaggtagatagagaattaaccgaaaataaaccaaattgaataccggtattagaaaagaaccaaggat 13085794  T
Q  201 aacactaacttatcataaacattaaagatatccatctatttgaacatcattaaacacaaatggaaaataaaatgattgaacatatatcaataagcattct 300  Q
    ||||||||||||||||||||| ||||||||       |  |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13085795 aacactaacttatcataaacactaaagata-------aaatgaatatcattaaacacaaatggaaaataaaatgattgaacatatatcaatgagcattct 13085887  T
Q  301 taacttcacaaaactgataatgtttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagt 400  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13085888 taacttcaaaaaactgataatgtttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagt 13085987  T
Q  401 tacagaatgaccttccacaacttgtatgtggaacttccataatatagcagctgcaaccattttcattt 468  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  13085988 tacagaatgaccttccacaacttgtatgtgaaacttccataacatagcagctgcaaccattttcattt 13086055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 378 - 468
Target Start/End: Original strand, 13271444 - 13271534
Alignment:
Q  378 agaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtggaacttccataatatagcagctgcaaccattttcattt 468  Q
    |||||||| ||||| || ||||| ||||| ||||||||||| || |||||||| ||||||||||||| || ||||||||||||||||||||    
T  13271444 agaacaatcgaaaccctaggagtaacagactgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcattt 13271534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 468
Target Start/End: Complemental strand, 13081282 - 13081109
Alignment:
Q  295 cattcttaacttcacaaaactgataatgtttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactct 394  Q
    |||||| ||||| | ||||||  ||||| ||||||||||| |||||| ||| || |||||| || || |||||||||||||| || | ||||||||| ||    
T  13081282 cattctgaactttataaaacttgtaatgcttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccct 13081183  T
Q  395 tggagttacagaatgaccttccacaacttgtatgtggaacttccataatatagcagctgcaaccattttcattt 468  Q
     ||| |||  || ||||||||||| || || ||||| |||||  |||| |  ||||||||||||||||||||||    
T  13081182 aggaattattgagtgaccttccaccacctgaatgtgaaacttaaataaaactgcagctgcaaccattttcattt 13081109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 468
Target Start/End: Complemental strand, 12964259 - 12964119
Alignment:
Q  328 atcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtat 427  Q
    ||||||| ||||||  ||| |||||||| || || ||||||| ||| || ||||| |||| ||| |||||||| ||| | ||||||||||| |||| |||    
T  12964259 atcaaatgcatctttgactgactttgaccttcaaaccatgtttcatacgaagaaccatagcaacccttggagtaacaaagtgaccttccaccacttctat 12964160  T
Q  428 gtggaacttccataatatagcagctgcaaccattttcattt 468  Q
    ||| |||||||| || | |  ||| ||||||||||||||||    
T  12964159 gtgaaacttccacaacacattagcagcaaccattttcattt 12964119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 468
Target Start/End: Complemental strand, 13244909 - 13244765
Alignment:
Q  324 ttatatcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 423  Q
    ||||||||||| |||||| |||| |||| ||| || || || |||| |||||| |  |||||||||  |||  | |||||||  ||||||||||| || |    
T  13244909 ttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttacagggtgaccttccaccacct 13244810  T
Q  424 gtatgtggaacttccataatatagcagctgcaaccattttcattt 468  Q
    ||||| | ||||||||||| | || ||||||||||||||||||||    
T  13244809 gtatgcgaaacttccataacaaagaagctgcaaccattttcattt 13244765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 408 - 468
Target Start/End: Complemental strand, 19279472 - 19279412
Alignment:
Q  408 tgaccttccacaacttgtatgtggaacttccataatatagcagctgcaaccattttcattt 468  Q
    ||||||||||| || |||||| | ||||||||||||| |||||||||||||||||||||||    
T  19279472 tgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcattt 19279412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 468
Target Start/End: Complemental strand, 30368491 - 30368352
Alignment:
Q  329 tcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg 428  Q
    |||||| |||||| || |||| ||||| || || ||||||| ||| |  || |||| |||| | || || |||||||  ||||||||||| || ||||||    
T  30368491 tcaaatgcatcttttagtaaccttgacgttcaagccatgtttcattcaaaggacaacagaagccctaggggttacagggtgaccttccacgacctgtatg 30368392  T
Q  429 tggaacttccataatatagcagctgcaaccattttcattt 468  Q
    || ||||||||||| |  |||||||||||||| |||||||    
T  30368391 tgaaacttccataacaaggcagctgcaaccatcttcattt 30368352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 468
Target Start/End: Original strand, 13094242 - 13094347
Alignment:
Q  363 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtggaacttccataatatagcagctgcaaccattt 462  Q
    ||||||| |||||| ||||  | |||||  ||||| |||||||  ||||||||||| || |||||||| ||||||| ||| | ||||||||| ||||| |    
T  13094242 ccatgtttcatgcgaagaaacacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatct 13094341  T
Q  463 tcattt 468  Q
    ||||||    
T  13094342 tcattt 13094347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 468
Target Start/End: Complemental strand, 13070559 - 13070420
Alignment:
Q  329 tcaaattcatcttctactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatg 428  Q
    |||||| |||||| || | ||||| || ||||| ||||||| |||| | |||||||  ||||   |||| |||||||  ||||||||||| || ||||||    
T  13070559 tcaaatgcatcttttagtgactttaaccttgaagccatgtttcatgtgaagaacaaatgaaagctttggggttacagggtgaccttccaccacctgtatg 13070460  T
Q  429 tggaacttccataatatagcagctgcaaccattttcattt 468  Q
    || ||||||  ||| | ||||||||| ||||| |||||||    
T  13070459 tgaaacttctgtaacaaagcagctgcgaccatcttcattt 13070420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 468
Target Start/End: Original strand, 13129671 - 13129776
Alignment:
Q  363 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtggaacttccataatatagcagctgcaaccattt 462  Q
    ||||||| |||||| ||||  | |||||  ||||| |||||||  ||||||||||| || |||||||| ||||||  ||| | ||||||||| ||||| |    
T  13129671 ccatgtttcatgcgaagaagcacagaaagccttggggttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatct 13129770  T
Q  463 tcattt 468  Q
    ||||||    
T  13129771 tcattt 13129776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 468
Target Start/End: Original strand, 13161364 - 13161469
Alignment:
Q  363 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtggaacttccataatatagcagctgcaaccattt 462  Q
    ||||||| |||||| ||||  | |||||  ||||| ||||||   ||||||||||| || |||||||| ||||||| ||| | ||||||||| ||||| |    
T  13161364 ccatgtttcatgcgaagaaacacagaaagccttggggttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatct 13161463  T
Q  463 tcattt 468  Q
    ||||||    
T  13161464 tcattt 13161469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 467
Target Start/End: Original strand, 13010616 - 13010720
Alignment:
Q  363 ccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaacttgtatgtggaacttccataatatagcagctgcaaccattt 462  Q
    |||||||  ||||| |||| |||||||| | |||| ||||  | |||||||||||| ||||||||| | || |||||||| | | ||||||| ||||| |    
T  13010616 ccatgttttatgcgaagaataatagaaagttttggggttatggcatgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatct 13010715  T
Q  463 tcatt 467  Q
    |||||    
T  13010716 tcatt 13010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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