View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19969_low_20 (Length: 233)

Name: NF19969_low_20
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19969_low_20
NF19969_low_20
[»] chr2 (3 HSPs)
chr2 (13-210)||(43559094-43559281)
chr2 (135-208)||(36071563-36071636)
chr2 (143-200)||(35796522-35796579)
[»] chr1 (3 HSPs)
chr1 (135-211)||(36003021-36003097)
chr1 (136-210)||(33351050-33351124)
chr1 (102-200)||(26918731-26918828)
[»] chr8 (1 HSPs)
chr8 (135-209)||(4271485-4271559)
[»] chr3 (1 HSPs)
chr3 (135-209)||(49918006-49918080)
[»] chr4 (2 HSPs)
chr4 (134-208)||(33583345-33583419)
chr4 (134-200)||(33589099-33589165)
[»] chr7 (1 HSPs)
chr7 (143-209)||(41826236-41826302)
[»] chr6 (1 HSPs)
chr6 (139-204)||(6282874-6282939)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 43559094 - 43559281
Alignment:
Q  13 gtttatacattttttatctctcaattttgtttcctctgtgtcacatacatacatgatgtaatgtaatattgtgcaaatgccaaatacacaaataaagtta 112  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  43559094 gtttatacattttttatctctcaattttgtttcc----------atacatacatgatgtaatgtaatgttgtgcaaatgccaaataaacaaataaagtta 43559183  T
Q  113 atattcaaacaacaacatcagcagcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgct 210  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43559184 atattcaaataaaaacatcaggagcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgct 43559281  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 36071563 - 36071636
Alignment:
Q  135 agcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36071563 agcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtg 36071636  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 35796579 - 35796522
Alignment:
Q  143 tggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35796579 tggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 35796522  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 36003021 - 36003097
Alignment:
Q  135 agcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgctt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36003021 agcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgctt 36003097  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 33351124 - 33351050
Alignment:
Q  136 gcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgct 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33351124 gcgctcatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgct 33351050  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 26918731 - 26918828
Alignment:
Q  102 aaataaagttaatattcaaacaacaacatcagcagcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 200  Q
    ||||||||||||  | |||||||||| |  || ||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26918731 aaataaagttaaactacaaacaacaa-acaagaagcacccgtggcctaacggataaggcgtttgacttctaatcaagcgattgtgggttcgagtcccac 26918828  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 4271485 - 4271559
Alignment:
Q  135 agcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271485 agcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgc 4271559  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 49918006 - 49918080
Alignment:
Q  135 agcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49918006 agcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgc 49918080  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 33583419 - 33583345
Alignment:
Q  134 cagcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtg 208  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  33583419 cagcgcccgtggcctaatggataaggcgtttgacttctaatcaagcgattgtgggttcgagtcccaccgggcgtg 33583345  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 33589165 - 33589099
Alignment:
Q  134 cagcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 200  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33589165 cagcacccgtggcctaatggataaggcgtttgacttctaatcaagcgattgtgggttcgagtcccac 33589099  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 41826302 - 41826236
Alignment:
Q  143 tggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgc 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  41826302 tggcctaatggataaggcgtttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtgc 41826236  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 6282939 - 6282874
Alignment:
Q  139 cccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactggg 204  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||    
T  6282939 cccatggcctaatggataaggcgcttgacttctaatcaagtgattgtgggtttgagttccattggg 6282874  T

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