View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19969_low_5 (Length: 376)
Name: NF19969_low_5
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19969_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 53449367 - 53449024
Alignment:
| Q |
18 |
gtatcaaacatggtaaaggggaagattgatgtatgaatcaaagagtaatgagatatttttggcaatagaaatattttgattatcgcaaaccacaagacat |
117 |
Q |
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| T |
53449367 |
gtatcaaacatggtaaaggggaagattgatgtatgaatcaaagagtaatgagatatttttggcattagaaatattttgattatcgcaaaccacaagacat |
53449268 |
T |
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| Q |
118 |
aaacttaacagcttaagtggtgttcatgacttgtgcgatgattcccatggtatatggtctgtttagaagtaaatttacctgtaaaagtgactgctgttgt |
217 |
Q |
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| T |
53449267 |
aaacttaacagcttaagtggtgttcatgacttgtgcgatgattcccatggtatatggtctgtttagaagtaaatttacctgtaaaagtgactgc---tgt |
53449171 |
T |
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| Q |
218 |
tactgctaaatacttgaatgtttcatttatatagtttgaacatacactgttgttgtaacttgtgttcatcctaataccatgtttatttatcctaggaatt |
317 |
Q |
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| T |
53449170 |
tactgctaaatacttgaatgtttcatttatatagtttgaacatacactgttgttgtaacttgtgttcatcctaataccatgtttatttatcctaggaatt |
53449071 |
T |
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| Q |
318 |
attctcttgaaatttattctatttgtttttccttacaattttatttt |
364 |
Q |
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| T |
53449070 |
attctcttgaaatttattctatttgtttttccttacaattttatttt |
53449024 |
T |
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