View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19969_low_6 (Length: 368)
Name: NF19969_low_6
Description: NF19969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19969_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 11592016 - 11591743
Alignment:
| Q |
18 |
tgatagatagtctattaagaattttgtctaggatttgatttatttgtagtttttcaaatagacaaatgttactagttagttagtatattaggtaggtcta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11592016 |
tgatagatagtctattaagaattttgtctaggatttgatttatttgtagtttttcaaatagacaaatgttattagttagttagtatattaggtaggtcta |
11591917 |
T |
|
| Q |
118 |
ccacccattatggccatgttaagttgcgaatggaatcgctggttcgatgggaggcaggcgcccccaaaaggccgggcagcttcaacaaaatcattttatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11591916 |
ccacccattatggccatgttaagttgcgaatggaatcgctggttcgaggggaggcgggcacccccaaaaagccgggcagcttcaacaaaatcattttatc |
11591817 |
T |
|
| Q |
218 |
gaagtcaccataaacatatgacattattttgattctactatctataggcatttgtcccttttgtttgattattg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11591816 |
gaagtcaccataaacatatgacattattttgattctactatctataggcatttgtcctttttgtttgattattg |
11591743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 11646104 - 11646245
Alignment:
| Q |
18 |
tgatagatagtctattaagaattttgtctaggatttgatttatttgtagtttttcaaatagacaaatgttactagttagttagtatattaggtaggtcta |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11646104 |
tgatagatagtct--taagaattttgtctaggatttgatttatttgtagtttttcaaatagaaaaatgttactagttagttagtatattaggtaggtcta |
11646201 |
T |
|
| Q |
118 |
ccacccattatggccatgttaagttgcgaatggaatcgctggtt |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11646202 |
ccacccattatggccatgttaagttgcgaatggaatcgctggtt |
11646245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 224 - 357
Target Start/End: Original strand, 11646246 - 11646377
Alignment:
| Q |
224 |
accataaacatatgacattattttgattctactatctataggcatttgtcccttttgtttgattattggcaaaatgaggaatgaaagttttatttatagc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11646246 |
accataaacatatgacattattttgattctactatctataggcatttgtcccttttgtttgattattggcaaaatgaggaatgaaagttttatttatagc |
11646345 |
T |
|
| Q |
324 |
tctttgcaatctcagagttctctcaagtctctgt |
357 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
11646346 |
tctttgcaatctc--agttctctcaagtctctgt |
11646377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University