View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1996_high_14 (Length: 299)

Name: NF1996_high_14
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1996_high_14
NF1996_high_14
[»] chr6 (24 HSPs)
chr6 (35-290)||(5257116-5257371)
chr6 (35-290)||(5284174-5284426)
chr6 (24-262)||(5157444-5157676)
chr6 (19-185)||(5434063-5434229)
chr6 (21-254)||(5396980-5397207)
chr6 (19-185)||(5128304-5128470)
chr6 (19-185)||(5176767-5176933)
chr6 (24-262)||(5425943-5426175)
chr6 (24-262)||(5066510-5066742)
chr6 (19-185)||(5278594-5278760)
chr6 (35-185)||(5073795-5073945)
chr6 (19-265)||(5354427-5354667)
chr6 (19-185)||(5102501-5102667)
chr6 (24-146)||(5350427-5350549)
chr6 (19-109)||(5690122-5690212)
chr6 (21-96)||(5181903-5181978)
chr6 (19-185)||(5344889-5345055)
chr6 (71-185)||(5243800-5243914)
chr6 (19-88)||(5447615-5447684)
chr6 (24-114)||(5096741-5096831)
chr6 (24-114)||(5370604-5370694)
chr6 (24-184)||(5383359-5383519)
chr6 (30-75)||(5447196-5447241)
chr6 (19-79)||(5281328-5281388)
[»] chr7 (1 HSPs)
chr7 (22-185)||(36213716-36213879)
[»] chr4 (6 HSPs)
chr4 (19-185)||(4344674-4344840)
chr4 (19-185)||(4361105-4361271)
chr4 (21-183)||(4123828-4123990)
chr4 (19-185)||(4320506-4320672)
chr4 (19-142)||(4335373-4335496)
chr4 (19-109)||(4133388-4133478)
[»] chr5 (1 HSPs)
chr5 (19-185)||(8877637-8877803)
[»] scaffold0294 (1 HSPs)
scaffold0294 (24-184)||(8788-8948)
[»] chr2 (1 HSPs)
chr2 (19-89)||(22584197-22584267)
[»] chr3 (4 HSPs)
chr3 (34-91)||(47986833-47986890)
chr3 (34-91)||(47996120-47996177)
chr3 (34-91)||(48005407-48005464)
chr3 (34-91)||(48014692-48014749)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 35 - 290
Target Start/End: Complemental strand, 5257371 - 5257116
Alignment:
Q  35 atctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctttgcgcggttat 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |||||||||||||| |||||||    
T  5257371 atctttaaccactctaattgcaaataacactgcaataacaagagtgccattatcagttttaagatcaaaaagcatcgaatttgtctctttgcacggttat 5257272  T
Q  135 gaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattacatcttctgtct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5257271 gaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatgatctcccatttccatttcaaattacatcttctgtct 5257172  T
Q  235 tgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatct 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5257171 tgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatct 5257116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 35 - 290
Target Start/End: Complemental strand, 5284426 - 5284174
Alignment:
Q  35 atctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctttgcgcggttat 134  Q
    ||||||||||||||| || || |||||||| ||||||||||||||||| |||||||| ||||| || ||| |||| |||| | |  ||||| ||||||||    
T  5284426 atctttaaccactctgatagctaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatattgctttgtgcggttat 5284327  T
Q  135 gaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattacatcttctgtct 234  Q
    || ||| ||||||||  ||||||||||||||| |||||||| ||||||||| ||   || ||| ||||||||||||||||||||||| | |||||||       
T  5284326 gagggactttcaagcgatgtgtttccattaataattttgtcatggatgtcagca---acaaataatctcccatttccatttcaaatttcttcttctgaaa 5284230  T
Q  235 tgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatct 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5284229 tgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatct 5284174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 5157676 - 5157444
Alignment:
Q  24 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 123  Q
    ||||| ||||||||||||||||||||  ||||| |  |||||||||||| |||||| || |||||||| ||||| |||||| |||| ||||   ||||||    
T  5157676 gaacagatggaatctttaaccactctgcttgcacacgacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatctctt 5157577  T
Q  124 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattac 223  Q
    || |||| ||||||||||||||  |   |||||||||||  ||||||| ||||||||||||| |   ||| ||| ||||||||| ||||||||||   ||    
T  5157576 tgggcggctatgaaggattttctcgtgatgtgtttccatctatcatttggtcttggatgtcacc---aacaaataatctcccatctccatttcaa---ac 5157483  T
Q  224 atcttctgtcttgtcatctcttgtttctttagatgtacc 262  Q
    |||| ||| | |||||||||||||| |||||||||||||    
T  5157482 atctgctgccatgtcatctcttgttcctttagatgtacc 5157444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 5434063 - 5434229
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||  |||||||  | ||||||||| |||| |||| | |    
T  5434063 acttggaacatatggaatctttaaccactctgcttgcaaataacactgcaataaaaagagtgcctctttcagtactgagatcaaaaagcattggatatat 5434162  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
    ||||||| |||||||||||||||| |||  |  | | |||||||| ||||||  |||||||||||||    
T  5434163 ctctttgtgcggttatgaaggattctcacacgatttatttccatttatcattcagtcttggatgtca 5434229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 5396980 - 5397207
Alignment:
Q  21 ttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtct 120  Q
    |||||||| |||||||||||||||||  |  ||||||||||||||||||||| ||||||||| |||||| || |||| | |||| |||| |||||| |||    
T  5396980 ttggaacagatggaatctttaaccaccttggttgcaaataacactgcaataaaaagagtgccgttttcaattttaaggttaaaaagcattggatttatct 5397079  T
Q  121 ctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaat 220  Q
    ||||| |||| ||||||||||||||| |    |||||||||   ||||||| ||||||||||||| |   ||| | | | ||||||||||||||||||      
T  5397080 ctttgtgcggatatgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcacc---aacaattaacctcccatttccatttcaa-- 5397174  T
Q  221 tacatcttctgtcttgtcatctcttgtttcttta 254  Q
     |||||| ||| | ||||||||||| ||||||||    
T  5397175 -acatctgctgccatgtcatctcttatttcttta 5397207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 5128470 - 5128304
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||||||||| |||||||| ||||| |||||  ||||||||||||||||||||| |||||| || |||||||| ||||| |||||| |||| |||| | |    
T  5128470 acttggaacaaatggaatcattaacaactctgcttgcaaataacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatatat 5128371  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
    |||| || ||||  ||||||||||||||||   |||||||||||  ||||| | |||||||||||||    
T  5128370 ctctctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatctggtcttggatgtca 5128304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 5176767 - 5176933
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||| || ||| | ||||| |||||| |||| ||||   |    
T  5176767 acttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagcattggatacat 5176866  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
    ||||||| |||| ||||||||||| ||| |   | | ||||||| |||||||| |||||||||||||    
T  5176867 ctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtca 5176933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 262
Target Start/End: Original strand, 5425943 - 5426175
Alignment:
Q  24 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 123  Q
    ||||| |||||||||||||||||||| |||||| |||| |||||||||| |||||| || |||||||| ||||  ||| || |||| ||||   ||||||    
T  5425943 gaacaaatggaatctttaaccactctgattgcacataaaactgcaataaaaagagtacccttttcagtggtaatgtcacaaagcattggatacatctctt 5426042  T
Q  124 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattac 223  Q
    || |||| ||||||||||||||| |   ||||||||||   ||||||| ||||||||||||| |   ||| ||| |||||||||  |||||||||   ||    
T  5426043 tgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcatttggtcttggatgtcacc---aacaaataatctcccatccccatttcaa---ac 5426136  T
Q  224 atcttctgtcttgtcatctcttgtttctttagatgtacc 262  Q
    ||||  | || |||||||||||||| |||||||||||||    
T  5426137 atctgatatcatgtcatctcttgttcctttagatgtacc 5426175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 5066742 - 5066510
Alignment:
Q  24 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 123  Q
    ||||| ||||||||||||||||||||  ||||| |||| |||||||||| |||| | || |||||||| ||||| |||||| |||| ||||   ||||||    
T  5066742 gaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctt 5066643  T
Q  124 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaaattac 223  Q
    || |||| ||||||||||| ||  |   |||||||||||  ||||||||||||||||||||| |   ||| ||| |||||||||  | |||||||   ||    
T  5066642 tgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttggatgtcacc---aacaaataatctcccatccctatttcaa---ac 5066549  T
Q  224 atcttctgtcttgtcatctcttgtttctttagatgtacc 262  Q
    |||| || || || ||||||||||| |||||||||||||    
T  5066548 atctactatcatgccatctcttgttcctttagatgtacc 5066510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 5278594 - 5278760
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||| || ||  | ||||| |||||| |||| ||||   |    
T  5278594 acttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtctatagtaaggtcaaaaagcattggatacat 5278693  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
    ||||||| |||| ||||||||||| ||| |   | | ||||||| |||||||| |||||||||||||    
T  5278694 ctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtca 5278760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 5073945 - 5073795
Alignment:
Q  35 atctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctttgcgcggttat 134  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||| || ||| |||| |||| | | |||||| |||| |||    
T  5073945 atctttaaccactctgatagcaaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctat 5073846  T
Q  135 gaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
    |||||||| ||| |   |||||| ||||  ||||||| |||||||||||||    
T  5073845 gaaggattctcacgtgatgtgttcccatcgatcatttggtcttggatgtca 5073795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 5354667 - 5354427
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    ||||||||||  |||||||||||||||| ||  |||||||| ||||||||||||||||||| || || ||| | || || || ||| |||| |||| | |    
T  5354667 acttggaacaattggaatctttaaccaccctgcttgcaaatgacactgcaataacaagagtacccttctcaatagttagttccaaaagcattggatatat 5354568  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtcaacaggaactaatcatctcccatttccatttcaa 218  Q
     |||||  | || ||||||||||| ||| |   |||||||||||  ||||||| ||||||||||||| |   ||| ||| |||||| || ||||||||||    
T  5354567 ttctttatgtggctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcacc---aacaaataatctccgatctccatttcaa 5354471  T
Q  219 attacatcttctgtcttgtcatctcttgtttctttagatgtaccgag 265  Q
       |||||| ||| | ||||||||||||||||||| |||||||||||    
T  5354470 ---acatctgctgccatgtcatctcttgtttcttttgatgtaccgag 5354427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 5102667 - 5102501
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||||||||| |||||||| |||||||||||  | ||||| |||||||||||||||| |||||| |||||||| ||||| |||||| |||| |||| | |    
T  5102667 acttggaacaaatggaatcattaaccactcttctagcaaacaacactgcaataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatat 5102568  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
    |||| |  | || ||||||||| |||||     |||||||||||  ||||| | |||||||||||||    
T  5102567 ctctctatgtggctatgaaggactttcacatgatgtgtttccatctatcatctggtcttggatgtca 5102501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 5350427 - 5350549
Alignment:
Q  24 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 123  Q
    ||||| ||||||||||||||||||||  ||||| |||| |||||||||| |||| | || |||||||| ||||| |||||| |||| ||||   ||||||    
T  5350427 gaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctt 5350526  T
Q  124 tgcgcggttatgaaggattttca 146  Q
    || |||| |||||||||||||||    
T  5350527 tgtgcggctatgaaggattttca 5350549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 5690212 - 5690122
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcat 109  Q
    |||||||||| ||||||||||||||||||||  |||||||| |||||| ||||||||| ||||| |||||| ||||||| |||||| ||||    
T  5690212 acttggaacaaatggaatctttaaccactctgcttgcaaatgacactggaataacaagtgtgcccttttcaattgtaaggtcaaaaagcat 5690122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 5181978 - 5181903
Alignment:
Q  21 ttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaa 96  Q
    |||||||| ||| |||||||||||||  | |||||||||||||||||||||||||||||||| |||||||| ||||    
T  5181978 ttggaacaaatgaaatctttaaccacattgattgcaaataacactgcaataacaagagtgccgttttcagtagtaa 5181903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 5344889 - 5345055
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||| ||||| ||| |||||||||||| ||| || |||||||||||||||||||||| ||| || |||| ||| ||||| |||||| |||| |||| | |    
T  5344889 acttagaacaaatgaaatctttaaccattctgatcgcaaataacactgcaataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatat 5344988  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
     ||| || | || ||||||||||| ||| ||  ||| |||||||  ||||| | |||||||||||||    
T  5344989 ttctctgtgtggctatgaaggattctcacgcgatgtatttccatctatcatctggtcttggatgtca 5345055  T

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Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 5243914 - 5243800
Alignment:
Q  71 aacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcatt 170  Q
    |||||||||||| |||||||| ||||| |||||| ||||||||| | | |||||| | || ||||||||||||||| ||  ||| |||||||  |||||     
T  5243914 aacaagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatc 5243815  T
Q  171 ttgtcttggatgtca 185  Q
    | |||||||||||||    
T  5243814 tggtcttggatgtca 5243800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 5447615 - 5447684
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttc 88  Q
    |||||||||| ||||||||||||||||||||  |||||||||| ||| ||||||||| |||||| |||||    
T  5447615 acttggaacagatggaatctttaaccactctgcttgcaaataatacttcaataacaacagtgcccttttc 5447684  T

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Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 5096741 - 5096831
Alignment:
Q  24 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggat 114  Q
    ||||| |||||||| ||||||| |||  ||||||||||||||| ||||| |||||| || |||||||| ||||| |||||| |||| ||||    
T  5096741 gaacaaatggaatcattaaccattctgcttgcaaataacactggaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggat 5096831  T

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Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 5370604 - 5370694
Alignment:
Q  24 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggat 114  Q
    ||||| |||||||| |||||||||||  ||||||||||||||||||||| ||| || || |||||||| ||| | |||||| |||| ||||    
T  5370604 gaacagatggaatcattaaccactctgcttgcaaataacactgcaataaaaagggtacccttttcagtagtacggtcaaaaagcattggat 5370694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 5383359 - 5383519
Alignment:
Q  24 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 123  Q
    ||||| |||||||||||||| ||| |  ||||| |||||||||||||||||||||| ||  ||||| || |||| |||||| | || | || | | ||||    
T  5383359 gaacaaatggaatctttaactactttgcttgcagataacactgcaataacaagagttcccctttcaattttaaggtcaaaaagtattgtatatatttctt 5383458  T
Q  124 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtc 184  Q
    || ||||  |||||||||| ||| |   |||||||||||  ||||||  ||||||||||||    
T  5383459 tgtgcggccatgaaggattctcacgtgatgtgtttccatccatcattaagtcttggatgtc 5383519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 5447196 - 5447241
Alignment:
Q  30 atggaatctttaaccactctaattgcaaataacactgcaataacaa 75  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||    
T  5447196 atggaatctttaaccactcttcttgcaaataacacttcaataacaa 5447241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 5281328 - 5281388
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagt 79  Q
    |||||||||| |||||||| ||||| || || ||||| ||| |||||||||||||||||||    
T  5281328 acttggaacaaatggaatccttaacgaccctgattgctaatgacactgcaataacaagagt 5281388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 36213879 - 36213716
Alignment:
Q  22 tggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctc 121  Q
    ||||||| |||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||  | | | ||    
T  36213879 tggaacagatggaatctttaaccaccttgattgcaaataacactgcaataacaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatc 36213780  T
Q  122 tttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
    |||| |||| ||||||||||| |||     |||||||||||  ||||||| |||||||||||||    
T  36213779 tttgtgcggctatgaaggattctcacatgatgtgtttccatctatcatttggtcttggatgtca 36213716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 4344674 - 4344840
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||| || |||||||| ||||| |||||| |||| |||||| |    
T  4344674 acttggaacaaatggaatctttaaccactctgattgcaaataacactgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttat 4344773  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
     |||||| | || ||||||||||| ||| |   ||||||||| |  ||||||| |||||||||||||    
T  4344774 ttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtca 4344840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 4361105 - 4361271
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||| ||| || |||||| |||||||||||||| |||| |||||| |    
T  4361105 acttggaacaaatggaatctttaaccactctgattgcaaataacactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttat 4361204  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
     |||||| | || ||||||||||| ||| |   ||||||||| |  ||||||| |||||||||||||    
T  4361205 ttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtca 4361271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 4123990 - 4123828
Alignment:
Q  21 ttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtct 120  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| |||||| ||||| || ||||| |||||| |||| |||||| | |    
T  4123990 ttggaacaaatggaatctttaaccactctgattgcaaataatactgctataacaaaagtgcccttttcggtagtaaggtcaaaaagcattggatttattt 4123891  T
Q  121 ctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgt 183  Q
    || || | || ||||||||||| ||  |   ||||||||| |  ||||||| |||||||||||    
T  4123890 ctctgtgtggatatgaaggattctctcgtgatgtgtttccttctatcatttcgtcttggatgt 4123828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 4320672 - 4320506
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||||||||| ||||||||||||||||| || ||||||||||| ||||  ||||||| ||| || |||||| | ||||| |||||| |||| |||||| |    
T  4320672 acttggaacaaatggaatctttaaccaccctgattgcaaataatactggtataacaaaagttcccttttcattagtaaggtcaaaaagcattggatttat 4320573  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
     ||| || | || ||||||||||| ||| |   ||||||||| |  ||||||| |||||||||||||    
T  4320572 ttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtca 4320506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 4335373 - 4335496
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||||||||| |||||||||||||||||||| || ||| |||||||||  ||||||| |||||| |||||||| ||||  |||||| |||| || | | |    
T  4335373 acttggaacaaatggaatctttaaccactctcatggcagataacactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatat 4335472  T
Q  119 ctctttgcgcggttatgaaggatt 142  Q
    ||||||| | || |||||||||||    
T  4335473 ctctttgtgtgggtatgaaggatt 4335496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 4133478 - 4133388
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcat 109  Q
    |||||||||| ||||| |||||||||||||| ||||   |||||||||||||||||| |||||| |||||||| | ||| |||||| ||||    
T  4133478 acttggaacaaatggagtctttaaccactctgattgtggataacactgcaataacaaaagtgcccttttcagtcgcaaggtcaaaaagcat 4133388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 8877637 - 8877803
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgt 118  Q
    |||| ||||| ||| ||||||||||||||||  ||||||||||||||||||||| |||||| ||||||||| | ||||| |||||| |||| |||| | |    
T  8877637 acttagaacagatgaaatctttaaccactctgcttgcaaataacactgcaataaaaagagtaccattttcattagtaaggtcaaaaagcattggatatat 8877736  T
Q  119 ctctttgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtca 185  Q
     |||||| |||| ||||||||||||||  |   |||||||||||  ||||||| |||||||||||||    
T  8877737 ttctttgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgtca 8877803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 8948 - 8788
Alignment:
Q  24 gaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagttgtaagatcaaaaggcatcggatttgtctctt 123  Q
    ||||| ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||| |||||| | ||||| |||||| | || | || | | ||||    
T  8948 gaacagatggaatctttaaccactctgcttgcagataacactgcattaacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctt 8849  T
Q  124 tgcgcggttatgaaggattttcaagcattgtgtttccattaatcattttgtcttggatgtc 184  Q
    || ||||  |||||||||| ||| |   |||||||||||  ||||||  ||||||||||||    
T  8848 tgtgcggccatgaaggattctcacgtgatgtgtttccatctatcattaagtcttggatgtc 8788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 22584267 - 22584197
Alignment:
Q  19 acttggaacatatggaatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttca 89  Q
    |||||||||| ||||||||||||||||||||  |||||||| | |||||||||| || |||||||||||||    
T  22584267 acttggaacaaatggaatctttaaccactctgcttgcaaatgaaactgcaataaaaaaagtgccattttca 22584197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 47986890 - 47986833
Alignment:
Q  34 aatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagt 91  Q
    |||||||||| ||| |  |||||||||||||||| |||||||||||||| || |||||    
T  47986890 aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagt 47986833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 47996177 - 47996120
Alignment:
Q  34 aatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagt 91  Q
    |||||||||| ||| |  |||||||||||||||| |||||||||||||| || |||||    
T  47996177 aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagt 47996120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 48005464 - 48005407
Alignment:
Q  34 aatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagt 91  Q
    |||||||||| ||| |  |||||||||||||||| |||||||||||||| || |||||    
T  48005464 aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagt 48005407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 48014749 - 48014692
Alignment:
Q  34 aatctttaaccactctaattgcaaataacactgcaataacaagagtgccattttcagt 91  Q
    |||||||||| ||| |  |||||||||||||||| |||||||||||||| || |||||    
T  48014749 aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagt 48014692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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