View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1996_high_6 (Length: 429)
Name: NF1996_high_6
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_high_6 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 5 - 416
Target Start/End: Complemental strand, 21264311 - 21263900
Alignment:
| Q |
5 |
ttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21264311 |
ttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgc |
21264212 |
T |
|
| Q |
105 |
tacaaccttctgttttttacttttccatgacaccaaatttcctccaacaaaggtaaaatagcctgaagtggatttcctacttgtgatatctcccgcccag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264211 |
tacaaccttctgttttttacttttccatgaaaccaaatttcctccaacaaaggtaaaatagcctgaagtggatttcctacttgtgatatctcccgcccag |
21264112 |
T |
|
| Q |
205 |
tcggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggatttcaagtaccggagaatccgaattactg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264111 |
tcggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggatttcaagtaccggagaatccgaattactg |
21264012 |
T |
|
| Q |
305 |
cattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtcgtgtatgagatagatagataagttttcc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21264011 |
cattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtcgtgtatgagatagataaataagttttcc |
21263912 |
T |
|
| Q |
405 |
aactaacctttg |
416 |
Q |
| |
|
|||||||||||| |
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|
| T |
21263911 |
aactaacctttg |
21263900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 5 - 416
Target Start/End: Complemental strand, 6847454 - 6847043
Alignment:
| Q |
5 |
ttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6847454 |
ttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgc |
6847355 |
T |
|
| Q |
105 |
tacaaccttctgttttttacttttccatgacaccaaatttcctccaacaaaggtaaaatagcctgaagtggatttcctacttgtgatatctcccgcccag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6847354 |
tacaaccttctgttttttacttttccatgaaaccaaatttcctccaacaaaggtaaaatagcctgaagtggatttcctacttgtgatatctcccgcccag |
6847255 |
T |
|
| Q |
205 |
tcggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggatttcaagtaccggagaatccgaattactg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6847254 |
tcggcgtctgtatagccttcaacctgaagatgattattttttttgaacattaatccttttccaggcgaggatttcaagtaccggagaatccgaattactg |
6847155 |
T |
|
| Q |
305 |
cattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtcgtgtatgagatagatagataagttttcc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
6847154 |
cattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtcgtgtatgagatagataaataagttttcc |
6847055 |
T |
|
| Q |
405 |
aactaacctttg |
416 |
Q |
| |
|
|||||||||||| |
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|
| T |
6847054 |
aactaacctttg |
6847043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 5 - 416
Target Start/End: Complemental strand, 47804883 - 47804472
Alignment:
| Q |
5 |
ttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47804883 |
ttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgc |
47804784 |
T |
|
| Q |
105 |
tacaaccttctgttttttacttttccatgacaccaaatttcctccaacaaaggtaaaatagcctgaagtggatttcctacttgtgatatctcccgcccag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47804783 |
tacaaccttctgttttttacttttccatgaaaccaaatttcctccaacaaaggtaaaatagcctgaagtggatttcctacttgtgatatctcccgcccag |
47804684 |
T |
|
| Q |
205 |
tcggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggatttcaagtaccggagaatccgaattactg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47804683 |
tcggcgtctgtatagccttcaacctgaagatgattattttttttgaacattaatccttttccaggcgaggatttcaagtaccggagaatccgaattactg |
47804584 |
T |
|
| Q |
305 |
cattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtcgtgtatgagatagatagataagttttcc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
47804583 |
cattcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtcgtgtatgagatagataaataagttttcc |
47804484 |
T |
|
| Q |
405 |
aactaacctttg |
416 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47804483 |
aactaacctttg |
47804472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 38460336 - 38460739
Alignment:
| Q |
7 |
ggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgcta |
106 |
Q |
| |
|
|||||||| |||||||| ||||||| |||| ||||| || |||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||| | |
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|
| T |
38460336 |
ggagcaaagccaatttcagtcaacagtcttctaagccagagaagctcacatagacccttagccatccctcgaaactctgcttcagcacttgataatgcaa |
38460435 |
T |
|
| Q |
107 |
caaccttctgttttttacttttccatgacaccaaatttcctccaacaaaggtaaaatagcctgaagtggatttcctacttgtgatatctcccgcccagtc |
206 |
Q |
| |
|
|||| || ||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||| | ||||||||||| |||||||| |
|
|
| T |
38460436 |
caactttttgtttcttacttttccatgtaaccaaattccctccgacaaaggtaaaatagcctgaggttgatttcctattggtgatatctcctgcccagtc |
38460535 |
T |
|
| Q |
207 |
ggcgtctgtatagccttcaacctgaagatgattattttttgtgaacattaatccttttccaggcgaggatttcaagtaccggagaatccgaattactgca |
306 |
Q |
| |
|
||||||||||||||||||| || | ||||||||| || |||||||| || ||||||||||| ||||||||||| ||||| | || ||||| |||||| |
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|
| T |
38460536 |
aacgtctgtatagccttcaacttgtacatgattattcttcgtgaacatcaaaccttttccaggtgaggatttcaaataccgcaagattcgaatcactgca |
38460635 |
T |
|
| Q |
307 |
ttcatgtgatcttcacttggattgtgcatgaactgactcattacacttacagcgtaggctatgtcaggtcgtgtatgagatagatagataagttttccaa |
406 |
Q |
| |
|
| ||||||||||| ||| || |||||||| || ||||||| |||||||| || || ||||| |||||||||||||| |||| || || ||||| |||| |
|
|
| T |
38460636 |
tccatgtgatctttactcgggttgtgcataaattgactcacgacacttaccgcatacgctatatcaggtcgtgtatgggataagtaaatgagtttgccaa |
38460735 |
T |
|
| Q |
407 |
ctaa |
410 |
Q |
| |
|
|||| |
|
|
| T |
38460736 |
ctaa |
38460739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 522808 - 522944
Alignment:
| Q |
40 |
agccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttacttttccatgacacca |
139 |
Q |
| |
|
|||||||| || |||||||||||||||| ||| || | || |||||||||||||| |||||||| || ||||| || || || || |||||||| || | |
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|
| T |
522808 |
agccaaagtagttcacaaagacccttagacattcctctgaactcagcttcagcacttgataatgccactaccttttgcttcttgctcttccatgagacta |
522907 |
T |
|
| Q |
140 |
aatttcctccaacaaaggtaaaatagcctgaagtgga |
176 |
Q |
| |
|
||| ||||| ||||| ||||| || ||||| ||||| |
|
|
| T |
522908 |
gattacctcctacaaatgtaaagtaacctgatgtgga |
522944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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