View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1996_high_8 (Length: 410)
Name: NF1996_high_8
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 44996563 - 44996172
Alignment:
| Q |
14 |
atgtctctgccactacaattgaaactaaaccagcttcatcattctctatgatatcaaggattgcgacctccactgttagcacaaccacaatttaaaaatc |
113 |
Q |
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| T |
44996563 |
atgtctctgccactacaattgatactaaaccagcttcatcattctctatgatatcaaggatttcgacctccactgttagcacaaccacaatttaaaaatc |
44996464 |
T |
|
| Q |
114 |
ttgacttataagtacgatagaactaaggacagtaaacatgcattgttatgtagcacaaatac----------ttcaaaataaagatatatttggtgtctg |
203 |
Q |
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| T |
44996463 |
ttgacttataagtacgatagaactaaggacagtaaacatgcattgttatgtagcacaaatacttcagaatacttcaaaataaagatatatttggtatctg |
44996364 |
T |
|
| Q |
204 |
acacaagtgattacatttacatttaattagttctataatttaaaattgttaacacttaacacgatctatatgtcagtgttgtgttccagtactcgtgttt |
303 |
Q |
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| T |
44996363 |
acacaagtgattacatttacatttaattagttctataatttaaaattg-------ttaacacggtctatatgtcagtgttgtgttccagtactcgttttt |
44996271 |
T |
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| Q |
304 |
gtgtctataaatgcaatgaaatgaagtactaacattatatatggttaatctaggtttgactgaaacttgtgggtcaactactcttgcatttcctgatga |
402 |
Q |
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| T |
44996270 |
gtgtctataaatgcaatgaaatgaagtactaacattatatatggttaatctaggtttgactgaaacttgtgggtcaactactcttgcatttcctgatga |
44996172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 2120873 - 2120813
Alignment:
| Q |
160 |
tatgtagcacaaatacttcaaaataaagatatatttggtgtctgacacaagtgattacatt |
220 |
Q |
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| T |
2120873 |
tatgtagcaccgatacttcaaaataaatatgtatctggtgtctgacacacgtgtttacatt |
2120813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 38768020 - 38768076
Alignment:
| Q |
346 |
ggttaatctaggtttgactgaaacttgtgggtcaactactcttgcatttcctgatga |
402 |
Q |
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| T |
38768020 |
ggttaatccaggtttgacagaaacatgtggaccaactactcttacatttccagatga |
38768076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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