View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1996_low_1 (Length: 818)

Name: NF1996_low_1
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1996_low_1
NF1996_low_1
[»] chr1 (8 HSPs)
chr1 (204-528)||(7859224-7859548)
chr1 (525-803)||(7858895-7859173)
chr1 (13-142)||(7859611-7859740)
chr1 (261-351)||(16824066-16824156)
chr1 (261-412)||(11075859-11076011)
chr1 (208-351)||(39997409-39997553)
chr1 (294-512)||(3620876-3621093)
chr1 (301-351)||(8266827-8266877)
[»] scaffold0013 (1 HSPs)
scaffold0013 (216-390)||(54677-54853)
[»] chr8 (8 HSPs)
chr8 (208-412)||(15243492-15243698)
chr8 (281-350)||(12597107-12597176)
chr8 (261-412)||(12607949-12608103)
chr8 (261-351)||(12563354-12563443)
chr8 (298-412)||(1758615-1758730)
chr8 (252-390)||(45260716-45260855)
chr8 (298-351)||(28932224-28932277)
chr8 (271-331)||(36128199-36128259)
[»] chr2 (4 HSPs)
chr2 (283-412)||(44440435-44440565)
chr2 (265-413)||(4653693-4653842)
chr2 (265-349)||(8271088-8271172)
chr2 (305-412)||(45036059-45036167)
[»] chr7 (8 HSPs)
chr7 (208-351)||(12501742-12501886)
chr7 (261-412)||(5464522-5464674)
chr7 (264-351)||(10328933-10329020)
chr7 (298-412)||(12527314-12527429)
chr7 (262-351)||(27046116-27046205)
chr7 (262-349)||(41029394-41029481)
chr7 (265-351)||(5949535-5949621)
chr7 (261-346)||(31443627-31443712)
[»] chr4 (6 HSPs)
chr4 (271-412)||(40656118-40656260)
chr4 (281-412)||(41940531-41940661)
chr4 (298-351)||(11371670-11371722)
chr4 (301-351)||(23397582-23397632)
chr4 (301-351)||(54259445-54259495)
chr4 (283-349)||(6450535-6450601)
[»] chr3 (6 HSPs)
chr3 (271-346)||(51160944-51161019)
chr3 (261-353)||(7320138-7320229)
chr3 (262-409)||(17508730-17508878)
chr3 (284-351)||(53590004-53590071)
chr3 (281-351)||(10877693-10877763)
chr3 (261-331)||(50426066-50426136)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 204 - 528
Target Start/End: Complemental strand, 7859548 - 7859224
Alignment:
Q  204 gcataaattaagttccaagcttatatgttatgatgaaagactccaaggcaggtgggagcagttccaatgagcaaagtaccttgcatgtgtttcctcctta 303  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7859548 gcataaattaagttccaagcttatatgttaggatgaaagactccaaggcaggtgggagcagttccaacgagcaaagtaccttgcatgtgtttcctcctta 7859449  T
Q  304 gccataaagtttgcacacatattttgtttcctaagaacatgcaccaatatatgataccatttgcatttaaaacatttctaatatgaaatatgttagttgc 403  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7859448 gccataaagtttgcacacatattttgtttcttaagaacatgcaccaatatatgataccatttgcatttaaaacatttctaatatgaaatatgttagttgc 7859349  T
Q  404 ataagtgtgtcggcacgatcatgaccaacaaacaaacaactcaagtgcctccaacacaatcaatctcacaaaataatgtcgttataacctttttatcgac 503  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  7859348 ataaatgtatcggcacgatcatgaccaacaaacaaacaactcaagtgcctccaacacaatcaatctcacaaaataatgttgttatagcctttttatcgac 7859249  T
Q  504 aaaaatcaatactcatccggatagc 528  Q
    |||||||||||||||| ||||||||    
T  7859248 aaaaatcaatactcattcggatagc 7859224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 525 - 803
Target Start/End: Complemental strand, 7859173 - 7858895
Alignment:
Q  525 tagctatctaatctacatcgtgattgcgaacaataacacctaagcatccgaaatattctaaaaagctaccgtcaacattgagtttcagtctccctttctt 624  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7859173 tagctatctaatctatatcgtgattgcaaacaataacacctaagcatctgaaatattctaaaaagctaccgtcaacattgagtttcagtctccctttctt 7859074  T
Q  625 aagaggtccaataaactaaaagacaagatgagtgtcaataaggttgtgtataaactacaccaatatgttactgttttccgattgttgttgcattttttca 724  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7859073 aagaggtccaataaactaaaagacaagatgagtgtcaataaggttgtgtataaactacaccaatgtgttactgttttccgattgttgttgcattttttca 7858974  T
Q  725 cacaacaataaattaagggccctctattatgtcgttacttttttacaatcgacctaccttttaatctaataaacaaaat 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7858973 cacaacaataaattaagggccctctattatgtcgttacttttttacaatcgacctaccttttaatctaataaacaaaat 7858895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 7859740 - 7859611
Alignment:
Q  13 tcattaattgttgtgtcaacacattattggatgtacgtgtaaaatattcgtatttgaatatactaattgaattcatgtaaaattactttacatgcataat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7859740 tcattaattgttgtgtcaacacattattggatgtacgtgtaaaatattcgtatttgaatatactaattgaattcatgtaaaattactttacatgcataat 7859641  T
Q  113 gattaatttcattttagtgagtgactcatc 142  Q
    ||||||||||||||||||||||||||||||    
T  7859640 gattaatttcattttagtgagtgactcatc 7859611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 16824066 - 16824156
Alignment:
Q  261 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    ||||||||| |||||| || |||||||||||| | | | |||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  16824066 gcagttccattgagcagagcaccttgcatgtgatcctttcttagccataaaatttgtacacatattttgttccctaagaacatgcgccaat 16824156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 261 - 412
Target Start/End: Complemental strand, 11076011 - 11075859
Alignment:
Q  261 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgata 359  Q
    |||||||||||||||| ||||| ||||||||| ||| ||||||||||||||   | |||||||||||||||   || ||||||||||||||  | |  |     
T  11076011 gcagttccaatgagcagagtactttgcatgtgattcttccttagccataaaacctacacacatattttgttcgttaggaacatgcaccaatgttgtattt 11075912  T
Q  360 ccatttgcatttaaaacatttctaatatgaaatatgttagttgcataagtgtg 412  Q
    |||||| ||| |||| ||| | |||||||||  |||||||| |||||||||||    
T  11075911 ccattttcatgtaaagcatctttaatatgaaggatgttagtagcataagtgtg 11075859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 39997409 - 39997553
Alignment:
Q  208 aaattaagttccaagcttatatgttatgatgaaagactccaaggcaggtgg-gagcagttccaatgagcaaagtaccttgcatgtgtttcctccttagcc 306  Q
    ||||||||||||||||| || | |  |||||| ||| |||| | |||| || ||||||||||| |||||  || |||||| ||||| |   |||||||||    
T  39997409 aaattaagttccaagctgatctctcgtgatgagagattccatgtcaggcggagagcagttccagtgagccgagcaccttggatgtgatcattccttagcc 39997508  T
Q  307 ataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    ||||| ||||||||||||||||| | |||||||||||||| ||||    
T  39997509 ataaaatttgcacacatattttgctccctaagaacatgcatcaat 39997553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 294 - 512
Target Start/End: Original strand, 3620876 - 3621093
Alignment:
Q  294 ttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaatata-tgataccatttgcatttaaaacatttctaatatgaaat 392  Q
    |||||||||||||||||| |||| |||||| |||||||  |||||||||||||| ||| || || || ||||| ||| ||||| || |||||||||||      
T  3620876 ttcctccttagccataaaatttgtacacatgttttgttctctaagaacatgcactaatgtagtgttatcatttccatgtaaaatatctctaatatgaagg 3620975  T
Q  393 atgttagttgcataagtgtgt-cggcacgatcatgaccaacaaacaaacaactcaagtgcctccaacacaatcaatctcacaaaataatgtcgttataac 491  Q
    |||| |||  ||||||| |||  || | ||||| ||||||| |||||||| |||||  || |||||  ||| || |||||| ||||||||| |||||| |    
T  3620976 atgtcagtaacataagtatgtaaggtatgatcacgaccaac-aacaaacatctcaaacgcttccaa-gcaaccactctcac-aaataatgttgttatagc 3621072  T
Q  492 ctttttatcgacaaaaatcaa 512  Q
    |||| |  |||||||||||||    
T  3621073 ctttgttgcgacaaaaatcaa 3621093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 8266877 - 8266827
Alignment:
Q  301 ttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    ||||||||||| | ||||||  ||||||||| |||||||||||||||||||    
T  8266877 ttagccataaaatctgcacaagtattttgttccctaagaacatgcaccaat 8266827  T

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Target: scaffold0013 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 216 - 390
Target Start/End: Original strand, 54677 - 54853
Alignment:
Q  216 ttccaagcttatatgttatgatgaaagactccaaggcaggtgggag-cagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtt 314  Q
    |||||||||||| | |||| |||| ||| |||| | |||||||  | |||||||| |||||| || |||||||||||| ||| ||||||||||||||||     
T  54677 ttccaagcttatctcttataatgagagattccatgtcaggtggaggacagttccagtgagcagagcaccttgcatgtgattcttccttagccataaagtc 54776  T
Q  315 tgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaa 390  Q
    ||||||||||||||||| ||||| |||||||| ||||  | |  |||||||| ||| |||||||| |||||||||||    
T  54777 tgcacacatattttgttccctaaaaacatgcaacaatgttgtattaccatttccatgtaaaacatctctaatatgaa 54853  T

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Target: chr8 (Bit Score: 51; Significance: 9e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 208 - 412
Target Start/End: Complemental strand, 15243698 - 15243492
Alignment:
Q  208 aaattaagttccaagcttatatgttatgatgaaagactccaaggcaggtgg-gagcagttccaatgagcaaagtaccttgcatgtgtttcctccttagcc 306  Q
    |||||||||||||||| ||| | ||| ||||| ||| |||| | || | || | ||||||||| |||||| || |||||||||||| | | |||||||||    
T  15243698 aaattaagttccaagcatatctcttaggatgagagattccatgccaagcggagggcagttccagtgagcagagcaccttgcatgtgatccttccttagcc 15243599  T
Q  307 ataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaaatatgttagttgcat 405  Q
    ||||| | ||||||||| | ||||| |||||||||||||||||||  | |  |  ||||| ||| |||||||| |||||||||||  |||| ||| ||||    
T  15243598 ataaaatatgcacacatgtattgttccctaagaacatgcaccaatgttgttttttcattttcatgtaaaacatctctaatatgaaggatgtgagtagcat 15243499  T
Q  406 aagtgtg 412  Q
    |||||||    
T  15243498 aagtgtg 15243492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 12597176 - 12597107
Alignment:
Q  281 accttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaa 350  Q
    |||||| ||||| | | |||||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  12597176 accttgaatgtgatccttccttagccataaaatctgcacacatattttgttccctaagaacatgcaccaa 12597107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 261 - 412
Target Start/End: Complemental strand, 12608103 - 12607949
Alignment:
Q  261 gcagttccaatgagcaaagtaccttg--catgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatga 357  Q
    |||||||||||||||| || |||||   |||||| | | |||||||||||||| | ||||||||||||||||| | || ||||||||||||||  | |      
T  12608103 gcagttccaatgagcagagcaccttttacatgtgatccttccttagccataaaatctgcacacatattttgttccttatgaacatgcaccaatgttgtat 12608004  T
Q  358 taccatttgcatttaaaacatttctaatatgaaatatgttagttgcataagtgtg 412  Q
    | |||||| ||| |||| ||| |||||||||||  |||| ||| |||||||||||    
T  12608003 ttccatttccatgtaaaccatctctaatatgaaggatgtcagtagcataagtgtg 12607949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 351
Target Start/End: Complemental strand, 12563443 - 12563354
Alignment:
Q  261 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    ||||||| | |||||| || |||||||||||| | | |||||| ||||||| | |||||||||||||| |||||||| |||||||||||||    
T  12563443 gcagttcgagtgagcatagcaccttgcatgtgatccttccttaaccataaaatctgcacacatatttt-tttcctaaaaacatgcaccaat 12563354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 1758615 - 1758730
Alignment:
Q  298 tccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaaatatgt 396  Q
    |||||||||||||| | |||||| |||||||||  |||||||||||||| ||||  | |  | |||||| ||| |||| ||| |||||||||||  ||||    
T  1758615 tccttagccataaaatctgcacatatattttgtcccctaagaacatgcatcaatgttgtatttccattttcatgtaaatcatctctaatatgaaggatgt 1758714  T
Q  397 tagttgcataagtgtg 412  Q
    |||| |||||||||||    
T  1758715 tagtggcataagtgtg 1758730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 252 - 390
Target Start/End: Original strand, 45260716 - 45260855
Alignment:
Q  252 caggtgggagcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    |||||||| |||||| ||||||||| || || |||||  || |||||||||| | ||||| | ||||| ||||||||| | | |||||||||||| ||||    
T  45260716 caggtgggggcagtttcaatgagcatagcacattgcacatgattcctccttaactataaaatatgcacgcatattttgctccataagaacatgcatcaat 45260815  T
Q  352 ata-tgataccatttgcatttaaaacatttctaatatgaa 390  Q
    ||| || |  ||||| | | |||||||| |||||||||||    
T  45260816 atagtgttgtcatttccgtgtaaaacatctctaatatgaa 45260855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 28932224 - 28932277
Alignment:
Q  298 tccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    |||||||||||||| | | |||||||||||||||  ||||||||||||||||||    
T  28932224 tccttagccataaaatctacacacatattttgttctctaagaacatgcaccaat 28932277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 36128259 - 36128199
Alignment:
Q  271 tgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtt 331  Q
    |||||| || |||||||||||| |   |||||||||||||| |||||||||||||||||||    
T  36128259 tgagcagagcaccttgcatgtgatctttccttagccataaaatttgcacacatattttgtt 36128199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 283 - 412
Target Start/End: Complemental strand, 44440565 - 44440435
Alignment:
Q  283 cttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttc 381  Q
    |||||||||| | | |||||| ||||||| | ||||||||||||||||| |||||||||||||||||||  | |  |  ||||| ||| |||||||| ||    
T  44440565 cttgcatgtgatccttccttaaccataaaatctgcacacatattttgttccctaagaacatgcaccaatgttgtattttcattttcatgtaaaacatctc 44440466  T
Q  382 taatatgaaatatgttagttgcataagtgtg 412  Q
    |||||||||  |||||||| |||||||||||    
T  44440465 taatatgaaggatgttagtagcataagtgtg 44440435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 265 - 413
Target Start/End: Complemental strand, 4653842 - 4653693
Alignment:
Q  265 ttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaatata-tgataccat 363  Q
    ||||| |||||| || |||||| ||||| | | |||||||||||||| |||||||||||||||||||   | |||||||| ||||||||| |  | ||||    
T  4653842 ttccagtgagcagagcaccttgtatgtgatccttccttagccataaaatttgcacacatattttgttctatgagaacatgtaccaatatagtatttccat 4653743  T
Q  364 ttgcatttaaaacatttctaatatgaaatatgttagttgcataagtgtgt 413  Q
    || ||| || | ||| | |||||||||| |||||||| ||||||||||||    
T  4653742 ttccatgtagagcatctttaatatgaaagatgttagtagcataagtgtgt 4653693  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 8271088 - 8271172
Alignment:
Q  265 ttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcacca 349  Q
    ||||| |||||| || | |||||||||| ||| |||||||||||||| | |||| |||||||||||| |||||||||||| ||||    
T  8271088 ttccagtgagcatagcatcttgcatgtgattcttccttagccataaaatctgcatacatattttgttccctaagaacatgaacca 8271172  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 45036059 - 45036167
Alignment:
Q  305 ccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaaatatgttagttgc 403  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||| |||  | |  |  ||||| ||| |||||||| |||||||||||  |||| ||| ||    
T  45036059 ccataaaatttgcacacatgttttgttccctaagaacatgcactaatgttgtattttcattttcatgtaaaacatctctaatatgaaggatgtcagtagc 45036158  T
Q  404 ataagtgtg 412  Q
    |||||||||    
T  45036159 ataagtgtg 45036167  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 351
Target Start/End: Complemental strand, 12501886 - 12501742
Alignment:
Q  208 aaattaagttccaagcttatatgttatgatgaaagactccaaggcaggtgggag-cagttccaatgagcaaagtaccttgcatgtgtttcctccttagcc 306  Q
    ||||||||||| |||||||| | | | ||||||||| |||| | |||| ||| | |||||||| |||||| || ||||||||||   | | |||||||||    
T  12501886 aaattaagttcgaagcttatctctcaagatgaaagattccatgccaggaggggggcagttccagtgagcagagcaccttgcatgcaatccgtccttagcc 12501787  T
Q  307 ataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    ||||| | ||||||||| ||||||  |||||||||||||||||||    
T  12501786 ataaaatctgcacacatgttttgtaacctaagaacatgcaccaat 12501742  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 261 - 412
Target Start/End: Original strand, 5464522 - 5464674
Alignment:
Q  261 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgata 359  Q
    |||||| || ||| ||||| |||||||||||| | | |||||||||||||| | ||||||  ||||||||| || ||||| ||||||||||  | |  |     
T  5464522 gcagtttcagtgaccaaagcaccttgcatgtgatccttccttagccataaaatctgcacatgtattttgttccccaagaatatgcaccaatgttctattt 5464621  T
Q  360 ccatttgcatttaaaacatttctaatatgaaatatgttagttgcataagtgtg 412  Q
    |||||| ||| |||||||| |||||||||||  ||| |||| |||||||||||    
T  5464622 ccatttccatgtaaaacatctctaatatgaaggatgctagtagcataagtgtg 5464674  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 10328933 - 10329020
Alignment:
Q  264 gttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    |||||| |||||| || || ||||||||| | | |||||  | ||||| ||||||||||||||||||| |||||||||||||||||||    
T  10328933 gttccagtgagcagagcactttgcatgtgatccttccttcactataaaatttgcacacatattttgttccctaagaacatgcaccaat 10329020  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 298 - 412
Target Start/End: Complemental strand, 12527429 - 12527314
Alignment:
Q  298 tccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatttctaatatgaaatatgt 396  Q
    |||||||||||||| | ||||||||| ||||||  |||||||||||||||||||  | |  | |||||| ||| |||||| | |||||||||||  ||||    
T  12527429 tccttagccataaaatctgcacacatgttttgtaacctaagaacatgcaccaatgttgtatttccattttcatgtaaaacgtctctaatatgaaggatgt 12527330  T
Q  397 tagttgcataagtgtg 412  Q
    |||| |||||||||||    
T  12527329 tagtagcataagtgtg 12527314  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 27046116 - 27046205
Alignment:
Q  262 cagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    |||||||| |||||| || |||||||||||| | | ||||||| || ||| ||||| ||| ||||||||| | |||||||||||||||||    
T  27046116 cagttccagtgagcagagcaccttgcatgtgatccttccttagtcacaaaatttgcccacgtattttgttccataagaacatgcaccaat 27046205  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 41029481 - 41029394
Alignment:
Q  262 cagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcacca 349  Q
    ||||||||||||||| || |||||| |||||   | |||||||||||||| | | |||||||||||||||  | ||||||||||||||    
T  41029481 cagttccaatgagcagagcaccttgtatgtgacccttccttagccataaaatctacacacatattttgttcgcgaagaacatgcacca 41029394  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 351
Target Start/End: Original strand, 5949535 - 5949621
Alignment:
Q  265 ttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    ||||| |||| | ||||||||||||||| | | | ||||||| |||| |   ||||||| ||||||| |||||||||||||||||||    
T  5949535 ttccagtgagtagagtaccttgcatgtgatcctttcttagccgtaaaatcaacacacatgttttgttccctaagaacatgcaccaat 5949621  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 31443712 - 31443627
Alignment:
Q  261 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgca 346  Q
    |||||||||  ||||| | ||||||||||||  |   |||||||||||||| | | |||||||||||| || ||||||||||||||    
T  31443712 gcagttccagagagcagaataccttgcatgtaatcattccttagccataaaatctacacacatattttattccctaagaacatgca 31443627  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 271 - 412
Target Start/End: Original strand, 40656118 - 40656260
Alignment:
Q  271 tgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaatat-atgataccatttgcat 369  Q
    |||||| || |||| |||| || ||| ||||||| |||||| | |||||||||||||||||  || ||||||||||||||| |  |  | |||||| |||    
T  40656118 tgagcatagcacctcgcatatgattcttccttagtcataaaatctgcacacatattttgttctcttagaacatgcaccaatgtcgtatttccatttccat 40656217  T
Q  370 ttaaaacatttctaatatgaaatatgttagttgcataagtgtg 412  Q
     |||||||| ||| ||||||||||||||||| | |||||||||    
T  40656218 gtaaaacatctctgatatgaaatatgttagtagtataagtgtg 40656260  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 281 - 412
Target Start/End: Original strand, 41940531 - 41940661
Alignment:
Q  281 accttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgataccatttgcatttaaaacatt 379  Q
    |||||||||||| | | |||||||||||||| ||||||||  ||||||||| |||||||||||||| ||||  | |  |||||||| ||| ||||||||     
T  41940531 accttgcatgtgatccttccttagccataaaatttgcaca--tattttgttccctaagaacatgcatcaatgttgtattaccatttccatgtaaaacatc 41940628  T
Q  380 tctaatatgaaatatgttagttgcataagtgtg 412  Q
    |||||||||||  ||||  || |||||||||||    
T  41940629 tctaatatgaaggatgtcggtagcataagtgtg 41940661  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 11371722 - 11371670
Alignment:
Q  298 tccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    |||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  11371722 tccttagccataaaatctgcacacatattttg-ttcctaagaacatgcaccaat 11371670  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 23397582 - 23397632
Alignment:
Q  301 ttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    ||||||||||| |||||||| || ||||||| |||||||||||||||||||    
T  23397582 ttagccataaaatttgcacatatgttttgttccctaagaacatgcaccaat 23397632  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 54259495 - 54259445
Alignment:
Q  301 ttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    |||||||| || ||||||||||||||||||| ||||||||||||| |||||    
T  54259495 ttagccatgaaatttgcacacatattttgttccctaagaacatgctccaat 54259445  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 6450601 - 6450535
Alignment:
Q  283 cttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcacca 349  Q
    |||||||||| ||  |||||| ||||||| | | ||||||||||||||| |||||||||||| ||||    
T  6450601 cttgcatgtgatttatccttaaccataaaatctacacacatattttgttccctaagaacatgaacca 6450535  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 346
Target Start/End: Complemental strand, 51161019 - 51160944
Alignment:
Q  271 tgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgca 346  Q
    |||||| || |||||| || || | |||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  51161019 tgagcagagcaccttgaatatgatccctccttagccataaaatttgcacacatgttttgttttctaagaacatgca 51160944  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 353
Target Start/End: Original strand, 7320138 - 7320229
Alignment:
Q  261 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaatat 353  Q
    |||||| ||||||||| |  |||||||||| | | | | |||||||||||| | ||||||||||||||| ||||||||| |||||||||||||    
T  7320138 gcagtttcaatgagcagatcaccttgcatgagatcctttcttagccataaaatctgcacacatattttg-ttcctaagagcatgcaccaatat 7320229  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 409
Target Start/End: Complemental strand, 17508878 - 17508730
Alignment:
Q  262 cagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat-atatgatac 360  Q
    |||||||| | |||| || |||||||||||| | | |||| | | ||||| | |||| |||||||||||| |||||||||||||||||||  | |  |||    
T  17508878 cagttccagtaagcagagcaccttgcatgtgatccttcctaaactataaaatatgcaaacatattttgttccctaagaacatgcaccaatgttgtattac 17508779  T
Q  361 catttgcatttaaaacatttctaatatgaaatatgttagttgcataagt 409  Q
    | ||| ||| |||||||| |||||||||||  |||| ||| ||||||||    
T  17508778 cgttttcatgtaaaacatctctaatatgaaggatgtcagtagcataagt 17508730  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 53590004 - 53590071
Alignment:
Q  284 ttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    ||||||||| |  ||||||||||||||| | ||||||||||||||||| ||| | |||||||||||||    
T  53590004 ttgcatgtgatctctccttagccataaaatctgcacacatattttgttcccttaaaacatgcaccaat 53590071  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 10877763 - 10877693
Alignment:
Q  281 accttgcatgtgtttcctccttagccataaagtttgcacacatattttgtttcctaagaacatgcaccaat 351  Q
    |||||||||||| | | |||||||||||||| | ||||||||| || |||| |||||| ||||||| ||||    
T  10877763 accttgcatgtgatacttccttagccataaaatctgcacacatgttatgttccctaagtacatgcatcaat 10877693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 50426136 - 50426066
Alignment:
Q  261 gcagttccaatgagcaaagtaccttgcatgtgtttcctccttagccataaagtttgcacacatattttgtt 331  Q
    ||||||||| ||||||||| || ||||||||| | | ||||| |||||||| | |||| ||||||||||||    
T  50426136 gcagttccagtgagcaaagcacattgcatgtgatccttccttggccataaaatatgcatacatattttgtt 50426066  T

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