View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1996_low_10 (Length: 376)
Name: NF1996_low_10
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 32922465 - 32922157
Alignment:
| Q |
10 |
ataatacttcgatcacacttaatatatttaaaaaatagatatatattttatagtgcaatagcacactctcaagcctatgtgggtccgcccttgcttacca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
32922465 |
ataatacttcgatcacacttaatatatttaaaaaatagatatatattttatagtgcaatagcacactctcaagcctat-------cgtccttgcttacca |
32922373 |
T |
|
| Q |
110 |
ccacttgattgtaatcaaaggtagatttgtttatcacaacgagaaccgcatgtctactcaaagttctcaaaagactttcctaccatttctcttgaataac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32922372 |
ccacttgattgtaatcaaaggtagatttgtttatcacaacgagaaccgcatgtctactcaaagttctcaaaagactttcctaccatttctcttgaataac |
32922273 |
T |
|
| Q |
210 |
tccgttatattataagggcatcattaactcagagcaagacaatcacttacctccatctcgtactaagttgagtgttagagttgtacatgcaaatacacta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32922272 |
tccgttatattataagggcatcattaactcagagcaagacaatcacttacctccatctcgtactaacttgagtgttagagttgtacatgcaaatacacta |
32922173 |
T |
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| Q |
310 |
tctcaccataatattg |
325 |
Q |
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|||||||||||||||| |
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| T |
32922172 |
tctcaccataatattg |
32922157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 32926765 - 32926664
Alignment:
| Q |
10 |
ataatacttcgatcacacttaatatatttaaaaaatagatatatattttatagtgcaatagcacactctcaagcctatgtgggtccgcccttgcttacca |
109 |
Q |
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|||||||||| |||||||||||| ||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||| |||||||||| ||| |
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| T |
32926765 |
ataatacttcaatcacacttaatttatttaaaaaata----tattttttatagtgcatgtgcacaccctcaagcctatgtgggtctgcccttgcttgcca |
32926670 |
T |
|
| Q |
110 |
ccactt |
115 |
Q |
| |
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|||||| |
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| T |
32926669 |
ccactt |
32926664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 32926659 - 32926553
Alignment:
| Q |
140 |
ttatcacaacgagaaccgcatgtctactcaaagttctcaaaagactttcctaccatttctcttgaataactccgttatattataagggcatcattaactc |
239 |
Q |
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|||||||||| |||| | || |||| |||||||||||||||||||||| ||| ||||| ||||||| ||| | | ||||||||||| || || || || | |
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| T |
32926659 |
ttatcacaacaagaatcacacgtctgctcaaagttctcaaaagacttttctatcatttttcttgaagaacactgctatattataagagcctcgttcaccc |
32926560 |
T |
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| Q |
240 |
agagcaa |
246 |
Q |
| |
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||||||| |
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| T |
32926559 |
agagcaa |
32926553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 32926516 - 32926459
Alignment:
| Q |
265 |
tctcgtactaagttgagtgttagagttgtacatgcaaatacactatctcaccataata |
322 |
Q |
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||||| ||||| |||||||||||||||| |||||||||||||||| ||| ||| |||| |
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| T |
32926516 |
tctcgcactaacttgagtgttagagttgcacatgcaaatacactacctcgccacaata |
32926459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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