View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1996_low_11 (Length: 350)
Name: NF1996_low_11
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_low_11 |
 | |
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| [»] chr2 (2 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
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|
| [»] chr3 (3 HSPs) |
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|
| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 21264315 - 21264658
Alignment:
| Q |
7 |
gtgagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagattggcactt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21264315 |
gtgaaatgaaactattttgtgacaacaaggctgctataaacatttctcacaatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcactt |
21264414 |
T |
|
| Q |
107 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21264415 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcaaaaac |
21264514 |
T |
|
| Q |
207 |
tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgcctctgatatatcatgaggaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264515 |
tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgcctctgatatatcatgaggaat |
21264614 |
T |
|
| Q |
307 |
catagggatttgatttgtattcagaaataatttaccattatttc |
350 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21264615 |
catagggatttgatttgtaatcagaaataatttaccattatttc |
21264658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 21259995 - 21260077
Alignment:
| Q |
268 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtattcagaaataatttaccattatttc |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21259995 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttc |
21260077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 47804887 - 47805230
Alignment:
| Q |
7 |
gtgagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagattggcactt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47804887 |
gtgaaatgaaactattttgtgacaacaaggctgctataaacatttctcacaatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcactt |
47804986 |
T |
|
| Q |
107 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47804987 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcaaaaac |
47805086 |
T |
|
| Q |
207 |
tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgcctctgatatatcatgaggaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47805087 |
tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgcctctgatatatcatgaggaat |
47805186 |
T |
|
| Q |
307 |
catagggatttgatttgtattcagaaataatttaccattatttc |
350 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47805187 |
catagggatttgatttgtaatcagaaataatttaccattatttc |
47805230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 47800566 - 47800648
Alignment:
| Q |
268 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtattcagaaataatttaccattatttc |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
47800566 |
tgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcaaaaataatttaccattatttc |
47800648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 34167970 - 34167698
Alignment:
| Q |
9 |
gagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagattggcacttta |
108 |
Q |
| |
|
||||||||||| || ||||| |||||||| || || || || || || ||||| |||||||||||||| || || ||| | || || ||| | || |||| |
|
|
| T |
34167970 |
gagatgaaactgttctgtgataacaaggcagcaatcgaaatctcgcataatcctgttcaacatgatcgtactaagcatattgaggtggatagacatttta |
34167871 |
T |
|
| Q |
109 |
ttaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactt |
208 |
Q |
| |
|
| ||||||||||| ||| || || || ||||||||||||| | |||||| || || |||||||||| | |||||||| || | || | | ||| |
|
|
| T |
34167870 |
tcaaacaaaatcttgaggaaaagatcatcaaatttccatttgtgagatctgaagatcaactagcagatatgttaacaaaagctgtctctagtaaagtctt |
34167771 |
T |
|
| Q |
209 |
tttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagtt |
281 |
Q |
| |
|
| ||||||||| ||||||||||| ||| ||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
34167770 |
tcacaactcactagacaagttgggtattagaaatatctactcaccaacttgagggggagtgttggcatgagtt |
34167698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 2701228 - 2701166
Alignment:
| Q |
24 |
tgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacat |
86 |
Q |
| |
|
|||||||||||||| |||||| ||| |||| |||||||||||||||||||| || |||||| |
|
|
| T |
2701228 |
tgtgacaacaaggcagctataagcatagctcataatccagttcaacatgatcgtacaaaacat |
2701166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 6847458 - 6847801
Alignment:
| Q |
7 |
gtgagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagattggcactt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
6847458 |
gtgaaatgaaactattttgtgacaacaaggctgctataaacatttctcacaatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcggtt |
6847557 |
T |
|
| Q |
107 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6847558 |
tattaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgagcaccagttagcagatatactcacaaaagccgtatgcagcaaaaac |
6847657 |
T |
|
| Q |
207 |
tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagttatgcctctgatatatcatgaggaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6847658 |
tttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagcgttggcgtgagttatgcctctgatatatcatgaggaat |
6847757 |
T |
|
| Q |
307 |
catagggatttgatttgtattcagaaataatttaccattatttc |
350 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6847758 |
catagggatttgatttgtaatcagaaataatttaccattatttc |
6847801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 267 - 350
Target Start/End: Original strand, 6843115 - 6843198
Alignment:
| Q |
267 |
gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtattcagaaataatttaccattatttc |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6843115 |
gtgttggcgtgagttatgcctctgatatatcatgaggaatcatagggatttgatttgtaatcagaaataatttaccattatttc |
6843198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 5860986 - 5860714
Alignment:
| Q |
9 |
gagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagattggcacttta |
108 |
Q |
| |
|
||||||||||| || ||||| |||||||| || | || || || || ||||| |||||||||||||| || || ||| | || || ||| | || |||| |
|
|
| T |
5860986 |
gagatgaaactgttctgtgataacaaggcagcagttgaaatctcgcataatcctgttcaacatgatcgtactaagcatattgaggtggatagacatttta |
5860887 |
T |
|
| Q |
109 |
ttaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactt |
208 |
Q |
| |
|
| ||||||||||| ||| || || || ||||||||||||| | |||||| || || |||||||||| | |||||||| || | || | | ||| |
|
|
| T |
5860886 |
tcaaacaaaatcttgaggaaaagatcatcaaatttccatttgtgagatctgaagatcaactagcagatatgttaacaaaagctgtctctagtaaagtctt |
5860787 |
T |
|
| Q |
209 |
tttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagtt |
281 |
Q |
| |
|
| ||||||||| ||||||||||| ||| ||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
5860786 |
tcacaactcactagacaagttgggtattagaaatatctactcaccaacttgagggggagtgttggcatgagtt |
5860714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 38460326 - 38460058
Alignment:
| Q |
11 |
gatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagattggcactttatt |
110 |
Q |
| |
|
|||||| || ||||||||||||||| |||| || || ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38460326 |
gatgaatctgttttgtgacaacaagtctgcaatcgaaatttcccataatccggttcaacatgatcgaaccaaacatgtggaagtagatcggcactttatt |
38460227 |
T |
|
| Q |
111 |
aaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||| |||| | |
|
|
| T |
38460226 |
aaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaagatcaattagcagatatactcacaaaagctgtatgtagcagagacttct |
38460127 |
T |
|
| Q |
211 |
tcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
279 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
38460126 |
tcaactcacttgacaagttgggtattcgagatctctatgcaccaacttgagggggagtgttggtgtgag |
38460058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 10670677 - 10670611
Alignment:
| Q |
55 |
acaatccagttcaacatgatcgaaccaaacatgtggaagtagattggcactttattaaacaaaatct |
121 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| |||||| | || ||||| ||| ||||||| |
|
|
| T |
10670677 |
acaatccagtgcaacatgatcgtactaaacatgtggaggtagatcgacattttataaaagaaaatct |
10670611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 132 - 279
Target Start/End: Complemental strand, 18043522 - 18043375
Alignment:
| Q |
132 |
ataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttttcaactcacttgacaagttgg |
231 |
Q |
| |
|
|||||||| |||||||||||||||||| | || || ||| |||||||||||||||||| ||||| | |||| |||||| |||||||||||| ||||||| |
|
|
| T |
18043522 |
ataattcagtttccatttgttaaatctaaagatcaattatcagatatactcacaaaagttgtatgtaccagagacttttacaactcacttgataagttgg |
18043423 |
T |
|
| Q |
232 |
gcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
279 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
18043422 |
gcattcaagatctctgtgcaccaacttgaggggaagtgttggtgtgag |
18043375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 15646538 - 15646266
Alignment:
| Q |
9 |
gagatgaaactattttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagattggcacttta |
108 |
Q |
| |
|
||||||||| | || ||||| |||||||| || || || || || || ||||| |||||||||||||| || || ||| | || || ||| | || |||| |
|
|
| T |
15646538 |
gagatgaaattgttctgtgataacaaggcagcaattgaaatctcgcataatcctgttcaacatgatcgtactaagcatattgaggtggatagacatttta |
15646439 |
T |
|
| Q |
109 |
ttaaacaaaatctggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactt |
208 |
Q |
| |
|
| ||||||||||| ||| || || || |||||||||| || | |||||| || || |||||||||| | |||||||| |||| || | | ||| |
|
|
| T |
15646438 |
tcaaacaaaatcttgaggaaaagatcatcaaatttccattcgtgagatctgaagatcaactagcagatatgttaacaaaagctgtatctagtaaagtctt |
15646339 |
T |
|
| Q |
209 |
tttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgagtt |
281 |
Q |
| |
|
| ||||||||| ||||||||||| ||| ||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
15646338 |
tcacaactcactagacaagttgggtattagaaatatctactcaccaacttgagggggagtgttggcatgagtt |
15646266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 522755 - 522497
Alignment:
| Q |
21 |
ttttgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacatgtggaagtagattggcactttattaaacaaaatc |
120 |
Q |
| |
|
|||||||| || |||||||| || | ||||| ||||| ||||| ||||| ||||| || ||||||||||| |||||| | || || || ||| |||||| |
|
|
| T |
522755 |
ttttgtgataataaggctgccatcgctatttcccacaacccagtgcaacacgatcgtactaaacatgtggaggtagatcgacatttcatcaaagaaaatc |
522656 |
T |
|
| Q |
121 |
tggagaccaaaataattcaatttccatttgttaaatctgaggaccagttagcagatatactcacaaaagccgtatgcagcagaaactttttcaactcact |
220 |
Q |
| |
|
| || |||| || || |||||| |||||||| ||||| || ||||| ||||| || || ||||| || || | |||| | || || |||||| |
|
|
| T |
522655 |
ttgaaggcaaagtagttagatttccttttgttaagtctgaagatcagttggcagacatgcttacaaaggcagtttctagcaaagttttccacagctcact |
522556 |
T |
|
| Q |
221 |
tgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
279 |
Q |
| |
|
||||||||| |||||| | || ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
522555 |
tgacaagttaggcattaatgatatctatgcaccaacttgagggggagtgttggtgtgag |
522497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 15953 - 16015
Alignment:
| Q |
24 |
tgtgacaacaaggctgctatagacatttctcacaatccagttcaacatgatcgaaccaaacat |
86 |
Q |
| |
|
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|
| T |
15953 |
tgtgacaacaaggcagctataagcatagctcataatccagttcaacatgatcgtacaaaacat |
16015 |
T |
|
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