View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1996_low_12 (Length: 341)
Name: NF1996_low_12
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 44995896 - 44996220
Alignment:
| Q |
17 |
tcacaatcaaattaaatcattcaataaaatcttcaaaacaaaagtttgagggtggaagattaaatttcaattcaacctgtgtgaaaccatccatctacta |
116 |
Q |
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| T |
44995896 |
tcacaatcaaattaaatcattcaataaaatcttcaaaacaaaagtttgagggtggaagattaaatttcaattcaacctgtgtgaaaccatccatctacta |
44995995 |
T |
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| Q |
117 |
tggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatctcaccacatgaaggatttccaagaggattgta |
216 |
Q |
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| T |
44995996 |
tggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatctcaccacatgaaggatttccaagaggattgta |
44996095 |
T |
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| Q |
217 |
acccatctctggaacttcttctagttgtatttcgttgtatatagatacaggaccaacggtaccaagcatgcacatttcatcaggaaatgcaagagtagtt |
316 |
Q |
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| T |
44996096 |
acccatctctggaacttcttctagttgtatttcgttgtatatagatacaggaccaacggtaccaagcatgcacatttcatcaggaaatgcaagagtagtt |
44996195 |
T |
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| Q |
317 |
tacccacaagtttcagtcaaaccta |
341 |
Q |
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| T |
44996196 |
gacccacaagtttcagtcaaaccta |
44996220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 340
Target Start/End: Complemental strand, 38768284 - 38768029
Alignment:
| Q |
85 |
aattcaacctgtgtgaaaccatccatctactatggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatc |
184 |
Q |
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| T |
38768284 |
aattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactcaggattcttatggtaaccagtgaaaacacttttgcctctgacacatatc |
38768185 |
T |
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| Q |
185 |
tcaccacatgaaggatttccaagaggattgtaacccatctctggaacttcttctagttgtatttcgttgtatatagatacaggaccaacggtaccaagca |
284 |
Q |
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| T |
38768184 |
tctccacatggcggagttccaagaggattgtaacccatgtctggaacttcctccagccgcaattcattgaatacagttacaacaccaacattacctagca |
38768085 |
T |
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| Q |
285 |
tgcacatttcatcaggaaatgcaagagtagtttacccacaagtttcagtcaaacct |
340 |
Q |
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| T |
38768084 |
tgcacatttcatctggaaatgtaagagtagttggtccacatgtttctgtcaaacct |
38768029 |
T |
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