View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1996_low_15 (Length: 273)
Name: NF1996_low_15
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 35629982 - 35630241
Alignment:
| Q |
14 |
agacatgattatatcattagagatcattgactatcatgtattatttacagaaacgcttatactaactaagtaaaacaaatcaactgatacgctataatgc |
113 |
Q |
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| T |
35629982 |
agacatgattatatcattagagatcattggctatcatgtattatttacagaaacgcttatactaactaagtaaaacaaatcaactgatacgctataatgc |
35630081 |
T |
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| Q |
114 |
tttattcataaaacttaggtgaaatcaagattaaaatacagagatacttacggctgatgcattaaaaatacgggctccatcaatgtgaagcttcaatccg |
213 |
Q |
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| T |
35630082 |
tttattcataaaacttaggtgaaatcaagattaaaatacagatttacttacagctgatgcattaaaaatacgggctccatcaatgtgaagcttcaatccg |
35630181 |
T |
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| Q |
214 |
tgcttcttagcaacctctccaactctatctgtgtattcaactgagagacatcttccaccc |
273 |
Q |
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| T |
35630182 |
tgcttcttagcaacctctccaactctatctgtgtattcaactgagagacatcttccaccc |
35630241 |
T |
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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 47827430 - 47827325
Alignment:
| Q |
167 |
ctgatgcattaaaaatacgggctccatcaatgtgaagcttcaatccgtgcttcttagcaacctctccaactctatctgtgtattcaactgagagacatct |
266 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| ||| |||| ||||||||| ||||||||||| ||||| |||||||| || || ||||| |
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| T |
47827430 |
ctgatgcattaaatatacgggctccatcgatgtgaagcttcagtccatgctgcttagcaacttctccaactctctctgtatattcaaccgaaaggcatct |
47827331 |
T |
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| Q |
267 |
tccacc |
272 |
Q |
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| T |
47827330 |
accacc |
47827325 |
T |
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