View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1996_low_17 (Length: 250)

Name: NF1996_low_17
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1996_low_17
NF1996_low_17
[»] chr7 (9 HSPs)
chr7 (1-237)||(14605540-14605776)
chr7 (1-237)||(16024717-16024953)
chr7 (1-237)||(16102518-16102757)
chr7 (1-237)||(16172196-16172435)
chr7 (36-226)||(17826326-17826522)
chr7 (1-217)||(17848167-17848389)
chr7 (36-86)||(15665639-15665689)
chr7 (169-236)||(15677317-15677384)
chr7 (36-95)||(15677464-15677523)
[»] scaffold0289 (1 HSPs)
scaffold0289 (36-86)||(18507-18557)
[»] chr1 (1 HSPs)
chr1 (39-103)||(15016789-15016853)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 14605540 - 14605776
Alignment:
Q  1 ataccaccagaaataggaggggcacccattttgggttcacttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaacttatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14605540 ataccaccagaaataggaggggcacccattttgggttcacttgacttatcttcaaaccatctcacagggaaaattccgagggagttaagcaacttatctt 14605639  T
Q  101 tgtccaatctcttgataagcaacaaccatctctcaggaaacattcctgtagaaatatcatccttagagcttgagaccttagaccttgcagaaaatgatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14605640 tgtccaatctcttgataagcaacaaccatctctcaggaaacattcctgtagaaatatcatccttagagcttgagaccttagaccttgcagaaaatgatct 14605739  T
Q  201 aagtggcttcatcacaaaacaacttgcaaatttgcct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  14605740 aagtggcttcatcacaaaacaacttgcaaatttgcct 14605776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16024717 - 16024953
Alignment:
Q  1 ataccaccagaaataggaggggcacccattttgggttcacttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaacttatctt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  16024717 ataccaccagaaataggaggggcacccaatttgggttcacttgacttatcttcaaaccatctcacaggggaaattccaaaggagttaagcaacttatctt 16024816  T
Q  101 tgtccaatctcttgataagcaacaaccatctctcaggaaacattcctgtagaaatatcatccttagagcttgagaccttagaccttgcagaaaatgatct 200  Q
    |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16024817 tgtcaaacctcttgataagcaataaccatctctcaggaaacattcctgtagaaatatcatccttagagcttgagaccttagaccttgcagaaaatgatct 16024916  T
Q  201 aagtggcttcatcacaaaacaacttgcaaatttgcct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  16024917 aagtggcttcatcacaaaacaacttgcaaatttgcct 16024953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16102518 - 16102757
Alignment:
Q  1 ataccaccagaaataggaggggcacccattttgggttcacttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaacttatctt 100  Q
    |||||||||||||||||| ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16102518 ataccaccagaaataggaagggcacccaatttgggtatacttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaacttgtctt 16102617  T
Q  101 tgtccaatctcttgataagcaacaaccatctctcaggaaacattcctgtagaaatatcatcctta---gagcttgagaccttagaccttgcagaaaatga 197  Q
    ||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||   |||||||||| |||||||||||||||||||||    
T  16102618 tgtccaaacttttgataagcaacaaccatctctccggaaacattcctgtcgaaatatcatccttagatgagcttgagatcttagaccttgcagaaaatga 16102717  T
Q  198 tctaagtggcttcatcacaaaacaacttgcaaatttgcct 237  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16102718 tctaagtggcttcatcacaaaacaacttgcaaatttgcct 16102757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16172196 - 16172435
Alignment:
Q  1 ataccaccagaaataggaggggcacccattttgggttcacttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaacttatctt 100  Q
    |||||||||||||||||| ||||| ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16172196 ataccaccagaaataggaagggcatccaatttgggtatacttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaacttgtctt 16172295  T
Q  101 tgtccaatctcttgataagcaacaaccatctctcaggaaacattcctgtagaaatatcatcctta---gagcttgagaccttagaccttgcagaaaatga 197  Q
    ||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||   |||||||||| |||||||||||||||||||||    
T  16172296 tgtccaaacttttgataagcaacaaccatctctccggaaacattcctgtcgaaatatcatccttagatgagcttgagatcttagaccttgcagaaaatga 16172395  T
Q  198 tctaagtggcttcatcacaaaacaacttgcaaatttgcct 237  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16172396 tctaagtggcttcatcacaaaacaacttgcaaatttgcct 16172435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 17826522 - 17826326
Alignment:
Q  36 ttcacttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaacttatctt---tgtccaatctcttgataagcaacaaccatctc 132  Q
    |||||| ||||||||||||||  | |||||||| |||||||| ||||||||| | |||||  |||   |||| || |||||||||||||||||||||||     
T  17826522 ttcactcgacttatcttcaaattacctcacaggaaaaattccaaaggagttaggaaacttgacttcattgtctaaactcttgataagcaacaaccatcta 17826423  T
Q  133 tcaggaaacattcctgtagaaatatcatcctta---gagcttgagaccttagaccttgcagaaaatgatctaagtggcttcatcacaaaacaacttg 226  Q
     ||||||||||||| ||| ||||| ||||  ||   || |||||||||||| | ||||||| ||||||||| || |||||| |||||||||||||||    
T  17826422 acaggaaacattccggtacaaataacatcgctaaaggaacttgagaccttaaatcttgcagcaaatgatcttagcggcttcgtcacaaaacaacttg 17826326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 17848167 - 17848389
Alignment:
Q  1 ataccaccagaaataggaggggcacccattttgggttcacttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaactt---at 97  Q
    |||||||||||| |||| | |||| |||||||   | | || ||||||||||||||  |||||||||| |||||||| ||||||||| | |||||    |    
T  17848167 ataccaccagaactaggcgaggcaaccattttatatgcgctcgacttatcttcaaattatctcacaggaaaaattccaaaggagttaggtaacttgactt 17848266  T
Q  98 ctttgtccaatctcttgataagcaacaaccatctctcaggaaacattcctgtagaaatatcatccttagag---cttgagaccttagaccttgcagaaaa 194  Q
    | ||||| || |||||||||  |||||||| ||| ||||||||| |||||||| ||||| ||||  || ||   |||||||||||| | ||||| | |||    
T  17848267 cattgtctaaactcttgatacacaacaaccgtctttcaggaaacgttcctgtacaaataacatcactaaagaaacttgagaccttaaatcttgccgtaaa 17848366  T
Q  195 tgatctaagtggcttcatcacaa 217  Q
    | |||||||||||||||||||||    
T  17848367 ttatctaagtggcttcatcacaa 17848389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 15665689 - 15665639
Alignment:
Q  36 ttcacttgacttatcttcaaaccatctcacagggaaaattccgaaggagtt 86  Q
    |||| |||||||||||||||| ||||||||||| |||||||| ||||||||    
T  15665689 ttcaattgacttatcttcaaatcatctcacaggaaaaattccaaaggagtt 15665639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 15677384 - 15677317
Alignment:
Q  169 cttgagaccttagaccttgcagaaaatgatctaagtggcttcatcacaaaacaacttgcaaatttgcc 236  Q
    ||||| ||||||||  ||||||||||| ||||||| || |||||| ||||||||||||| | ||||||    
T  15677384 cttgaaaccttagatgttgcagaaaataatctaagcggtttcatcccaaaacaacttgccattttgcc 15677317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 15677523 - 15677464
Alignment:
Q  36 ttcacttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaactt 95  Q
    |||| |||||||||||||||||||||| |  || |||||||| ||||||||| |||||||    
T  15677523 ttcaattgacttatcttcaaaccatcttattggtaaaattccaaaggagttaggcaactt 15677464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 18557 - 18507
Alignment:
Q  36 ttcacttgacttatcttcaaaccatctcacagggaaaattccgaaggagtt 86  Q
    |||| |||||||||||||||| ||||||||||| |||||||| ||||||||    
T  18557 ttcaattgacttatcttcaaatcatctcacaggaaaaattccaaaggagtt 18507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 15016789 - 15016853
Alignment:
Q  39 acttgacttatcttcaaaccatctcacagggaaaattccgaaggagttaagcaacttatctttgt 103  Q
    |||| |||| |||||||||||||| || ||||||||||| |||||| ||   |||||||||||||    
T  15016789 acttaacttgtcttcaaaccatcttacggggaaaattccaaaggagctagaaaacttatctttgt 15016853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University