View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1996_low_18 (Length: 249)

Name: NF1996_low_18
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1996_low_18
NF1996_low_18
[»] chr5 (15 HSPs)
chr5 (13-135)||(19100227-19100349)
chr5 (14-135)||(31114192-31114313)
chr5 (13-99)||(29231272-29231358)
chr5 (13-135)||(34764784-34764905)
chr5 (25-131)||(39935426-39935532)
chr5 (23-135)||(3387087-3387199)
chr5 (25-99)||(27925187-27925261)
chr5 (13-98)||(7056947-7057031)
chr5 (23-135)||(28470409-28470523)
chr5 (58-127)||(42247687-42247756)
chr5 (13-110)||(39329351-39329448)
chr5 (91-125)||(8229136-8229170)
chr5 (25-98)||(42990525-42990598)
chr5 (63-99)||(8229173-8229209)
chr5 (91-131)||(27925144-27925184)
[»] chr8 (9 HSPs)
chr8 (14-140)||(24888964-24889090)
chr8 (14-132)||(25429830-25429949)
chr8 (156-249)||(32321080-32321184)
chr8 (13-134)||(11789568-11789700)
chr8 (14-99)||(9409774-9409859)
chr8 (13-135)||(17749093-17749215)
chr8 (46-135)||(24728757-24728857)
chr8 (72-135)||(32855836-32855898)
chr8 (13-99)||(9136921-9137007)
[»] chr7 (17 HSPs)
chr7 (13-135)||(45648418-45648540)
chr7 (13-135)||(47843961-47844083)
chr7 (25-124)||(45491975-45492074)
chr7 (21-127)||(3751698-3751804)
chr7 (23-135)||(45804740-45804852)
chr7 (25-125)||(24699659-24699759)
chr7 (25-139)||(48138301-48138415)
chr7 (13-136)||(42040652-42040786)
chr7 (69-135)||(40836197-40836262)
chr7 (25-119)||(31397397-31397491)
chr7 (91-135)||(25311344-25311388)
chr7 (25-65)||(6562453-6562493)
chr7 (91-130)||(5474871-5474910)
chr7 (21-99)||(48152872-48152950)
chr7 (91-136)||(2186011-2186056)
chr7 (25-86)||(43495959-43496020)
chr7 (91-131)||(48152829-48152869)
[»] chr6 (10 HSPs)
chr6 (13-135)||(688274-688396)
chr6 (13-99)||(2032551-2032637)
chr6 (25-137)||(10229249-10229361)
chr6 (24-99)||(12312228-12312303)
chr6 (25-98)||(17533597-17533670)
chr6 (73-134)||(31383187-31383248)
chr6 (24-99)||(12283899-12283974)
chr6 (28-86)||(7495258-7495316)
chr6 (95-139)||(2988415-2988459)
chr6 (46-124)||(32340501-32340579)
[»] chr4 (16 HSPs)
chr4 (13-128)||(45773826-45773941)
chr4 (13-137)||(2295168-2295303)
chr4 (13-139)||(47923141-47923267)
chr4 (59-135)||(24913652-24913726)
chr4 (59-135)||(24917342-24917418)
chr4 (25-115)||(1052196-1052286)
chr4 (29-123)||(7208693-7208787)
chr4 (14-76)||(27675304-27675366)
chr4 (25-99)||(38948668-38948742)
chr4 (13-74)||(2243057-2243118)
chr4 (13-89)||(4214126-4214202)
chr4 (80-132)||(15476996-15477048)
chr4 (16-75)||(15476943-15477002)
chr4 (14-59)||(23068105-23068150)
chr4 (25-98)||(34075365-34075438)
chr4 (91-135)||(6255203-6255247)
[»] chr3 (17 HSPs)
chr3 (13-135)||(46979547-46979669)
chr3 (81-139)||(17064089-17064147)
chr3 (13-123)||(51241448-51241558)
chr3 (21-115)||(52695766-52695860)
chr3 (13-135)||(7629389-7629506)
chr3 (20-115)||(52204325-52204420)
chr3 (13-99)||(32834838-32834924)
chr3 (13-135)||(43471583-43471705)
chr3 (13-134)||(36504640-36504761)
chr3 (24-99)||(45472455-45472529)
chr3 (25-133)||(2111226-2111341)
chr3 (25-86)||(24120918-24120979)
chr3 (25-99)||(24611668-24611742)
chr3 (25-99)||(36172144-36172218)
chr3 (25-86)||(12176692-12176753)
chr3 (21-89)||(34026905-34026973)
chr3 (13-65)||(35296311-35296363)
[»] chr1 (20 HSPs)
chr1 (25-135)||(14286825-14286935)
chr1 (13-99)||(40693772-40693858)
chr1 (13-99)||(17116090-17116176)
chr1 (25-131)||(17936407-17936513)
chr1 (13-98)||(38683116-38683200)
chr1 (13-131)||(40032453-40032575)
chr1 (13-89)||(31513812-31513888)
chr1 (13-89)||(50726515-50726591)
chr1 (68-135)||(25294791-25294858)
chr1 (25-135)||(50709364-50709473)
chr1 (25-112)||(4073755-4073842)
chr1 (26-99)||(11767853-11767926)
chr1 (71-123)||(13558312-13558364)
chr1 (80-135)||(10443353-10443407)
chr1 (56-99)||(21149723-21149766)
chr1 (13-52)||(25294752-25294791)
chr1 (13-108)||(30902558-30902653)
chr1 (94-122)||(4973370-4973398)
chr1 (94-134)||(22791367-22791407)
chr1 (91-135)||(29488049-29488093)
[»] chr2 (15 HSPs)
chr2 (13-123)||(38140400-38140510)
chr2 (17-89)||(42794940-42795012)
chr2 (13-123)||(7017651-7017760)
chr2 (13-99)||(30382985-30383071)
chr2 (13-123)||(38221808-38221929)
chr2 (13-96)||(40498426-40498509)
chr2 (13-89)||(11562916-11562991)
chr2 (91-135)||(17328513-17328557)
chr2 (25-99)||(14749411-14749485)
chr2 (25-99)||(26352435-26352509)
chr2 (30-123)||(35428594-35428688)
chr2 (81-135)||(41323708-41323762)
chr2 (65-138)||(18858270-18858343)
chr2 (25-98)||(36467052-36467125)
chr2 (99-135)||(42795033-42795069)
[»] scaffold0565 (1 HSPs)
scaffold0565 (13-99)||(7745-7831)
[»] scaffold0495 (1 HSPs)
scaffold0495 (60-137)||(5967-6044)
[»] scaffold0015 (1 HSPs)
scaffold0015 (21-85)||(38481-38549)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 19100227 - 19100349
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |    
T  19100227 aatatttattaaaaattaaaataattaatttcaatacttcgtaggtacatatccgcgagtatccgtgaagtatcggtatccgatacgggtacgtctccat 19100326  T
Q  113 tttggagtatccgagcttcatag 135  Q
    ||||||||||||  |||||||||    
T  19100327 tttggagtatccaggcttcatag 19100349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 31114192 - 31114313
Alignment:
Q  14 atatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgtt 113  Q
    |||||| |||||||||||||||||||| |  ||||||| || |||||| |||||||||||| ||| ||||||| || ||||||||||||| ||||| |||    
T  31114192 atattttttaaaaattaaaataattaattctgatactttatggatacgcatccgcgagtatgcgtagagtatcagtatccgatacgggtatgtctcagtt 31114291  T
Q  114 ttggagtatccgagcttcatag 135  Q
    |||||||||||| |||||||||    
T  31114292 ttggagtatccgggcttcatag 31114313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 29231272 - 29231358
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||||||||||||||| | ||||||||| | |||||||||| |||| |||||||||||||||||| |||||||||    
T  29231272 aatatttattaaaaattaaaataattaattccgatacttcttggatacgtatctgcgaatatccgtggagtatcggtatccgatacg 29231358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 34764784 - 34764905
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    ||||||| || |||||| |||||||||| |  |||||||| | | | |||||||||||||||||||||||||| |||  |||||||||||||||||| ||    
T  34764784 aatatttttttaaaatttaaataattaattctgatacttcgtgggtgcgtatccgcgagtatccgtggagtattggtagccgatacgggtacgtctctgt 34764883  T
Q  113 tttggagtatccgagcttcatag 135  Q
    ||| ||||||||| |||||||||    
T  34764884 ttt-gagtatccgggcttcatag 34764905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 39935532 - 39935426
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatcc 124  Q
    |||||||||||||||| |  |||||||| |  ||||||||||||||||||||||||| ||||| | ||||||||  ||||||||| |||||| |||||||    
T  39935532 aaattaaaataattaattatgatacttcgtgaatacgtatccgcgagtatccgtggaatatcgatatccgatacaagtacgtctctgttttgaagtatcc 39935433  T
Q  125 gagcttc 131  Q
    |||||||    
T  39935432 gagcttc 39935426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 3387199 - 3387087
Alignment:
Q  23 aaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtat 122  Q
    |||||||||||||||||| || |||||||| | | || |||||||||| ||||  |||||||||||| |||||||  ||||| || || |||||||||||    
T  3387199 aaaaattaaaataattaattttgatacttcgtgggtatgtatccgcgaatatctttggagtatcggtatccgatataggtacatcaccattttggagtat 3387100  T
Q  123 ccgagcttcatag 135  Q
    ||| || ||||||    
T  3387099 ccgggcctcatag 3387087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 27925261 - 27925187
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||| |||| |||||| |||||| || ||||||    
T  27925261 aaattaaaataattaactccgatacttcataggtacatatccgcgaatatcagtggaggatcggtatctgatacg 27925187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 7057031 - 7056947
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatac 98  Q
    ||||||| ||||||||||||||| |||| ||||||||||| | | ||||||| | ||||||||||| |||||||||| ||||||||    
T  7057031 aatattttttaaaaattaaaata-ttaatttcgatacttcgtgggtacgtattcacgagtatccgtagagtatcggtatccgatac 7056947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 28470409 - 28470523
Alignment:
Q  23 aaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtat--cggtgtccgatacgggtacgtctccgttttggagt 120  Q
    ||||||||||| |||||| ||||||||||||| | ||||||||||  |||||  |||||||||  |||| ||  ||||  ||| | ||||||||||||||    
T  28470409 aaaaattaaaaaaattaatttcgatacttcatgggtacgtatccgttagtatttgtggagtatcgcggtatctaatacatgtaagcctccgttttggagt 28470508  T
Q  121 atccgagcttcatag 135  Q
    ||| |||||||||||    
T  28470509 atctgagcttcatag 28470523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 42247687 - 42247756
Alignment:
Q  58 tacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatccgag 127  Q
    |||||||||| || |||||| ||||||||||| ||||||| |||||| ||| | ||||||||||||||||    
T  42247687 tacgtatccgagaatatccgcggagtatcggtatccgatatgggtacatcttcattttggagtatccgag 42247756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 39329448 - 39329351
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctcc 110  Q
    ||||| ||||| |||||||||||||||| | ||||||||| | ||||| ||||||||| ||||||   ||||||| | || ||||||| |||| ||||    
T  39329448 aatatatattataaattaaaataattaattccgatacttcgtggatacatatccgcgaatatccgcaaagtatcgatatctgatacggatacgactcc 39329351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 8229170 - 8229136
Alignment:
Q  91 tccgatacgggtacgtctccgttttggagtatccg 125  Q
    ||||||||||||||||||||||||||| |||||||    
T  8229170 tccgatacgggtacgtctccgttttggggtatccg 8229136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 42990598 - 42990525
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatac 98  Q
    |||||||||||||||| |  ||| |||||| ||||||||||||  |||||||| |||| |||||| || |||||    
T  42990598 aaattaaaataattaattctgattcttcatggatacgtatccgaaagtatccgcggagcatcggtatctgatac 42990525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 8229209 - 8229173
Alignment:
Q  63 atccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    ||||||||||||||||||||||||||| || ||||||    
T  8229209 atccgcgagtatccgtggagtatcggtatctgatacg 8229173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 27925184 - 27925144
Alignment:
Q  91 tccgatacgggtacgtctccgttttggagtatccgagcttc 131  Q
    ||||||||| ||||||||| ||||||||||||||| |||||    
T  27925184 tccgatacgagtacgtctctgttttggagtatccgggcttc 27925144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 24888964 - 24889090
Alignment:
Q  14 atatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgtt 113  Q
    |||||| |||||||||||||||||||| |  |||||||||| | |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||    
T  24888964 atattttttaaaaattaaaataattaattctgatacttcatgggtacgtatccgcgagtatccgtggaatattggtatccgatacgggtacgtctccgtt 24889063  T
Q  114 ttggagtatccgagcttcatagtttaa 140  Q
    ||| ||||| |||||||||||| ||||    
T  24889064 ttgtagtattcgagcttcatagattaa 24889090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 25429949 - 25429830
Alignment:
Q  14 atatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgt-ccgatacgggtacgtctccgt 112  Q
    |||||| |||||||||||||||||||| |  |||||||||| | |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||    
T  25429949 atattttttaaaaattaaaataattaattctgatacttcatgggtacgtatccgcgagtatccgtggagtattggtatcccgatacgggtacgtctccgt 25429850  T
Q  113 tttggagtatccgagcttca 132  Q
    |||| ||||| |||||||||    
T  25429849 tttgtagtattcgagcttca 25429830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 32321080 - 32321184
Alignment:
Q  156 ttatatgagtaaaagtttcttgcattctcatgcgaaaataattcaaaataat-----------tcaaatgaatgctagactatattttacttcattacga 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||           | |||||||||||||||||||||||||||||||||||    
T  32321080 ttatatgagtaaaagtttcttgcattctcatgcgaaaataattcaaaataatttgtaagcggataaaatgaatgctagactatattttacttcattacga 32321179  T
Q  245 aaaat 249  Q
    |||||    
T  32321180 aaaat 32321184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 11789568 - 11789700
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg-----------gg 101  Q
    |||||||||||||||||||||||||||| |  |||||||| | |||||||||||||||||||||||||||||||||| || ||||||           ||    
T  11789568 aatatttattaaaaattaaaataattaattctgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatctgatacgtatctggtacggg 11789667  T
Q  102 tacgtctccgttttggagtatccgagcttcata 134  Q
     ||||||||||||||||||||||| ||||||||    
T  11789668 cacgtctccgttttggagtatccgggcttcata 11789700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 9409859 - 9409774
Alignment:
Q  14 atatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    ||||||||||||||||||||||||||| |  |||||||| | |||||||||||| ||||||||||||||||||||| |||||||||    
T  9409859 atatttattaaaaattaaaataattaattatgatacttcgtggatacgtatccgtgagtatccgtggagtatcggtatccgatacg 9409774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 17749093 - 17749215
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    ||||||| ||||||||| |||||||||| |  | |||||| | | | ||||||||| | |||| ||||||||||||| |||||||  ||||||||||  |    
T  17749093 aatattttttaaaaatttaaataattaattctgttacttcgtgggtgcgtatccgcaaatatctgtggagtatcggtatccgatataggtacgtctcaat 17749192  T
Q  113 tttggagtatccgagcttcatag 135  Q
    ||  ||||||||| |||||||||    
T  17749193 ttcagagtatccgggcttcatag 17749215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 24728757 - 24728857
Alignment:
Q  46 atacttcatagatacgtatccgcgagtatccgtggagtatcggtgtc-----------cgatacgggtacgtctccgttttggagtatccgagcttcata 134  Q
    |||||| || |||||||||||||||||||||||||||||| ||| ||           ||||||| ||||||||||||||||||||||||| ||||||||    
T  24728757 atactttatggatacgtatccgcgagtatccgtggagtattggtatctgatacgtatccgatacgagtacgtctccgttttggagtatccgggcttcata 24728856  T
Q  135 g 135  Q
    |    
T  24728857 g 24728857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 32855898 - 32855836
Alignment:
Q  72 tatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    |||||||| ||||||||| ||||||||  |||||||| ||||||||||||||||| ||||||||    
T  32855898 tatccgtgaagtatcggtatccgatacatgtacgtcttcgttttggagtatccga-cttcatag 32855836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 9136921 - 9137007
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    ||||||||||  |||||||||||||||| |||||| || | ||| ||| ||||||| |||||| ||| ||||| ||| || ||||||    
T  9136921 aatatttattttaaattaaaataattaatttcgatgctccgtaggtacatatccgcaagtatctgtgaagtattggtatctgatacg 9137007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 45648418 - 45648540
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    |||||||||||||||||||||||||||| | ||||||||| | | |||||||||||||||||||||||||| || || |||||||||||||||||||| |    
T  45648418 aatatttattaaaaattaaaataattaattccgatacttcgtgggtacgtatccgcgagtatccgtggagtttcagtatccgatacgggtacgtctccat 45648517  T
Q  113 tttggagtatccgagcttcatag 135  Q
    |||||||||| || |||||||||    
T  45648518 tttggagtattcgggcttcatag 45648540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 47843961 - 47844083
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    ||||||| | |||||| ||||||||||| |  |||||||| | | |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  47843961 aatatttttaaaaaatcaaaataattaattgagatacttcgtgggtacgtatccgcgagtatccgtggagtatcggtatccgatacgggtacgtctctgt 47844060  T
Q  113 tttggagtatccgagcttcatag 135  Q
    |||| |||||||| |||||||||    
T  47844061 tttgtagtatccgggcttcatag 47844083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 45492074 - 45491975
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatcc 124  Q
    |||||||||||||||| | |||||||||||   || |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  45492074 aaattaaaataattaattccgatacttcatgagtatgtatccgcgaatatccgtggagtattggtatccgatacgggtacgtctccgttttgaagtatcc 45491975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 3751698 - 3751804
Alignment:
Q  21 ttaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagt 120  Q
    |||| |||| |||||||||||| |||||| || | | ||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  3751698 ttaacaattgaaataattaactccgatacgtcgtgggtacgtatccacgaatatccgtggagtatcgatatccgatacgggtacgtctccgttttggagt 3751797  T
Q  121 atccgag 127  Q
    || ||||    
T  3751798 atgcgag 3751804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 45804852 - 45804740
Alignment:
Q  23 aaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtat 122  Q
    |||||||||||||||||| | ||||||||| |  |||||||||| ||| |||||||| ||||||||| || |||||||||||||||||||||| ||||||    
T  45804852 aaaaattaaaataattaattccgatacttcgtgaatacgtatcctcgaatatccgtgaagtatcggtatctgatacgggtacgtctccgttttagagtat 45804753  T
Q  123 ccgagcttcatag 135  Q
      | |||||||||    
T  45804752 ttgggcttcatag 45804740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 24699759 - 24699659
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatcc 124  Q
    |||||||||||||||| | ||||||| | | |||||||||||| ||||||||| |||||||| || |||||||| | ||||||||| |||||||||||||    
T  24699759 aaattaaaataattaattccgatactccgtggatacgtatccgagagtatccgcggagtatcagtatccgatacagatacgtctccattttggagtatcc 24699660  T
Q  125 g 125  Q
    |    
T  24699659 g 24699659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 48138415 - 48138301
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatcc 124  Q
    |||||||||||||||| | ||||| ||| ||| |||||||||| ||||||||||||| ||||| | |||||||||||| ||||||| |||| ||||||      
T  48138415 aaattaaaataattaattccgatatttcgtaggtacgtatccgagagtatccgtggattatcgatatccgatacgggtgcgtctccattttagagtatat 48138316  T
Q  125 gagcttcatagttta 139  Q
    | |||||||| ||||    
T  48138315 gggcttcatacttta 48138301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 42040652 - 42040786
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcg-----------gtgtccgatacggg 101  Q
    ||||||||||||||||||||||||  || |  |||||||| |  |||||||||| | ||||||||||||||||||           || |||| |||| |    
T  42040652 aatatttattaaaaattaaaataaccaattatgatacttcgtgaatacgtatccacaagtatccgtggagtatcggtatctgatacgtatccggtacgag 42040751  T
Q  102 tacgtctccgttttggagtatccgagcttcatagt 136  Q
    |||||||||||||||||||||||||||||||||||    
T  42040752 tacgtctccgttttggagtatccgagcttcatagt 42040786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 40836262 - 40836197
Alignment:
Q  69 gagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||| |||||||||||    
T  40836262 gagtatcc-tggagtatcggtatccgatacgagtacgtctccgtttttgagtatctgagcttcatag 40836197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 31397397 - 31397491
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggag 119  Q
    |||||||||||||||| | ||||||| | |   ||| ||| |||||||||||||| |||||| || |||||||| ||||||||||| ||||||||    
T  31397397 aaattaaaataattaattccgatactccgtgtgtacctattcgcgagtatccgtgaagtatcagtatccgatacaggtacgtctccattttggag 31397491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 25311344 - 25311388
Alignment:
Q  91 tccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    ||||||||||||||||||||||||||||||||||  |||||||||    
T  25311344 tccgatacgggtacgtctccgttttggagtatccaggcttcatag 25311388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 6562453 - 6562493
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatc 65  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  6562453 aaattaaaataattaattttgatacttcatagatacgtatc 6562493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 5474871 - 5474910
Alignment:
Q  91 tccgatacgggtacgtctccgttttggagtatccgagctt 130  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  5474871 tccgatatgggtacgtctccgttttggaatatccgagctt 5474910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 48152950 - 48152872
Alignment:
Q  21 ttaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    ||||||||| |||||||||| |  |||||||| | | | ||| ||||||||||||||||||||||| || ||| |||||    
T  48152950 ttaaaaatttaaataattaattctgatacttcgtgggtgcgtgtccgcgagtatccgtggagtatcagtatccaatacg 48152872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 2186011 - 2186056
Alignment:
Q  91 tccgatacgggtacgtctccgttttggagtatccgagcttcatagt 136  Q
    |||||||||||||||||| ||||||| |||||| ||| ||||||||    
T  2186011 tccgatacgggtacgtcttcgttttgaagtatctgagtttcatagt 2186056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 43495959 - 43496020
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatc 86  Q
    ||||| |||||||||| |  |||||||| ||| | ||||||||||||||||||| |||||||    
T  43495959 aaatttaaataattaattcggatacttcgtaggtgcgtatccgcgagtatccgtagagtatc 43496020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 48152869 - 48152829
Alignment:
Q  91 tccgatacgggtacgtctccgttttggagtatccgagcttc 131  Q
    |||||||| | |||||||||||||||||||||||| |||||    
T  48152869 tccgatacagatacgtctccgttttggagtatccgggcttc 48152829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 688274 - 688396
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    |||||||||||||||||||||||| ||| |  |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |    
T  688274 aatatttattaaaaattaaaataaataattctgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatccgatacgggtacatctccat 688373  T
Q  113 tttggagtatccgagcttcatag 135  Q
    |||||||||||||| ||| ||||    
T  688374 tttggagtatccgaactttatag 688396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 2032551 - 2032637
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||    
T  2032551 aatatttattaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatccgatacg 2032637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 10229361 - 10229249
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatcc 124  Q
    ||||| |||||||||| |  |||||||| | | | ||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||| |||||||    
T  10229361 aaatttaaataattaattctgatacttcgtgggtgcgtatccgcgaatatacgtggagtatcggtatctgatacgggtacgtctccgttttgaagtatcc 10229262  T
Q  125 gagcttcatagtt 137  Q
       ||||||||||    
T  10229261 agacttcatagtt 10229249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 12312228 - 12312303
Alignment:
Q  24 aaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||| ||||||| || |||||||||    
T  12312228 aaaattaaaataattaattccgatacttcataggtacgtatccgcaagtatccgtagagtatcagtatccgatacg 12312303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 17533597 - 17533670
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatac 98  Q
    |||||||||||||||| | ||||||||||| |||||||||| | |||||||||  |||||||||| ||||||||    
T  17533597 aaattaaaataattaattccgatacttcatggatacgtatctgagagtatccgcagagtatcggtatccgatac 17533670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 31383187 - 31383248
Alignment:
Q  73 atccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcata 134  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| |||||||| ||||||||||    
T  31383187 atccgtggaatatcggtatccgatacgagtacgtctccgtttcggagtatcagagcttcata 31383248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 12283899 - 12283974
Alignment:
Q  24 aaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    ||||||||||||||||| || |||||||| | | ||| ||||||| | |||||||||||||||||| |||||||||    
T  12283899 aaaattaaaataattaattttgatacttcgtgggtacatatccgcaaatatccgtggagtatcggtatccgatacg 12283974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 7495258 - 7495316
Alignment:
Q  28 ttaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatc 86  Q
    ||||||||||||| ||||||||| |||||||| |||||||| ||||||| || ||||||    
T  7495258 ttaaaataattaatttcgatactccatagatatgtatccgcaagtatccatgaagtatc 7495316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 2988415 - 2988459
Alignment:
Q  95 atacgggtacgtctccgttttggagtatccgagcttcatagttta 139  Q
    ||||| ||||||||| ||||||||||||| |||||||||||||||    
T  2988415 atacgagtacgtctctgttttggagtatctgagcttcatagttta 2988459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 32340501 - 32340579
Alignment:
Q  46 atacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatcc 124  Q
    ||||||| ||||||  | || ||||||||||||| || |||| | ||| |||| | |||||||||||||||||||||||    
T  32340501 atacttcgtagatagatgtctgcgagtatccgtgaaggatcgatatccaatacagatacgtctccgttttggagtatcc 32340579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 45773941 - 45773826
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||| || |||||||| |    
T  45773941 aatatttattaaaaattaaaataattaatttcgatacttcatagatacgtatccgcaagtatccgtgaagtatcgatatccgatacaggcacgtctccat 45773842  T
Q  113 tttggagtatccgagc 128  Q
    ||| ||||||| ||||    
T  45773841 tttagagtatctgagc 45773826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 2295303 - 2295168
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccga-----------tacggg 101  Q
    |||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||| |||||||||||| |||||           ||||||    
T  2295303 aatatttattaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtatccttggagtatcggtatccgacacgtatccggtacggg 2295204  T
Q  102 tacgtctccgttttggagtatccgagcttcatagtt 137  Q
    |||||||| ||||| ||||||||| |||||||||||    
T  2295203 tacgtctctgtttttgagtatccgtgcttcatagtt 2295168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 47923141 - 47923267
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    ||||||| || ||||||||||||||||| |  |||||| | | | |||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  47923141 aatatttttttaaaattaaaataattaattatgatactccgtgggtacgtatctgcgagtatccgtgaagtattggtatccgatacgggtacgtctccgt 47923240  T
Q  113 tttggagtatccgagcttcatagttta 139  Q
    ||| |||||| || |||||| ||||||    
T  47923241 tttagagtattcgggcttcacagttta 47923267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 24913726 - 24913652
Alignment:
Q  59 acgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    ||||||| ||||||||  ||||||||||||| || ||||| |||||||||| |||||||||||||||||||||||||    
T  24913726 acgtatctgcgagtat--gtggagtatcggtatctgataccggtacgtctctgttttggagtatccgagcttcatag 24913652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 24917418 - 24917342
Alignment:
Q  59 acgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    ||||||||||||||||  |||||||||| || |  ||||| |||||||||| |||||||||||||||||||||||||    
T  24917418 acgtatccgcgagtatatgtggagtatcagtatttgataccggtacgtctctgttttggagtatccgagcttcatag 24917342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 1052286 - 1052196
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgtttt 115  Q
    ||||| |||||||||||| ||||||||| |   | ||||||||||| ||||||| |||||||||| ||| |||||||||||||||| ||||    
T  1052286 aaatttaaataattaactccgatacttcgttagtgcgtatccgcgaatatccgtagagtatcggtatccaatacgggtacgtctccatttt 1052196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 7208693 - 7208787
Alignment:
Q  29 taaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatc 123  Q
    |||||||||||| | | ||||||| | ||||  |||| | ||||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  7208693 taaaataattaattacaatacttcgtggatatatatctgagagtatctgtgaagtatcgatatccgatacgtgtacgtctccgttttggagtatc 7208787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 27675366 - 27675304
Alignment:
Q  14 atatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatcc 76  Q
    |||||| |||||||||||||||||||  | ||||||||||| | |||||||||||||||||||    
T  27675366 atattttttaaaaattaaaataattatttccgatacttcatgggtacgtatccgcgagtatcc 27675304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 38948668 - 38948742
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||  | ||||||| | | |||| ||||||| ||||||||||||||||||||| |||||||||    
T  38948668 aaattaaaataattagttccgatactccgtggatatgtatccgagagtatccgtggagtatcggtatccgatacg 38948742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 2243057 - 2243118
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtat 74  Q
    |||||||||||||||||||||||||||| |  |||||||||| | ||||||| |||||||||    
T  2243057 aatatttattaaaaattaaaataattaattctgatacttcatgggtacgtattcgcgagtat 2243118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 4214126 - 4214202
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggt 89  Q
    ||||||| |||||||||||||||||||| |  | |||||| | | |||||||| ||||||| ||||| |||||||||    
T  4214126 aatattttttaaaaattaaaataattaattctggtacttcgtgggtacgtatctgcgagtacccgtgaagtatcggt 4214202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 15476996 - 15477048
Alignment:
Q  80 gagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttca 132  Q
    |||||||||| |||||||||||||||||||| ||| | |||||||| ||||||    
T  15476996 gagtatcggtatccgatacgggtacgtctccatttagaagtatccgggcttca 15477048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 15476943 - 15477002
Alignment:
Q  16 atttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatc 75  Q
    |||||||||||||||||||| |||| | ||||||||| |   ||||||||||||||||||    
T  15476943 atttattaaaaattaaaatagttaattccgatacttcgtcagtacgtatccgcgagtatc 15477002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 23068105 - 23068150
Alignment:
Q  14 atatttattaaaaattaaaataattaacttcgatacttcatagata 59  Q
    |||||| |||||||||||||||||||| ||||| ||||| ||||||    
T  23068105 atattttttaaaaattaaaataattaatttcgaaacttcgtagata 23068150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 34075365 - 34075438
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatac 98  Q
    |||||||||||||||| | |||||||   | | |||||||||| ||||||||  ||||||||||| ||||||||    
T  34075365 aaattaaaataattaattccgatactctgtgggtacgtatccgagagtatccacggagtatcggtatccgatac 34075438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 6255247 - 6255203
Alignment:
Q  91 tccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||    
T  6255247 tccgatacgggtacgtctccattttagagtatccggacttcatag 6255203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 46979547 - 46979669
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    |||||||||||||||||||||||||||| |  |||||||  | | ||| |||  ||||||| ||||||||||||||| |||||||||||||||||||| |    
T  46979547 aatatttattaaaaattaaaataattaattctgatactttgtgggtacatatttgcgagtacccgtggagtatcggtatccgatacgggtacgtctccat 46979646  T
Q  113 tttggagtatccgagcttcatag 135  Q
    |||||||||||||||||||||||    
T  46979647 tttggagtatccgagcttcatag 46979669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 17064089 - 17064147
Alignment:
Q  81 agtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatagttta 139  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17064089 agtatcggtatccgatacgggtacgtctccgttttggagtatccgagcttcatagttta 17064147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 51241448 - 51241558
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    ||||||| |||||||||||||||||||| |   ||||||||||| ||| |||||||||||||| ||| ||||||| | | ||||||||| ||||| ||||    
T  51241448 aatattttttaaaaattaaaataattaattctcatacttcataggtacatatccgcgagtatcagtgaagtatcgatattcgatacgggcacgtcaccgt 51241547  T
Q  113 tttggagtatc 123  Q
    ||| |||||||    
T  51241548 tttagagtatc 51241558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 52695766 - 52695860
Alignment:
Q  21 ttaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgtttt 115  Q
    |||||||||||||||||||| |  |||||||| | | ||||| |||  ||||||||||||||||||||| |||||||||||||| |||| |||||    
T  52695766 ttaaaaattaaaataattaattctgatacttcgtgggtacgtttccaagagtatccgtggagtatcggtatccgatacgggtacatctctgtttt 52695860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 7629389 - 7629506
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacggg-tacgtctccg 111  Q
    |||||||||||||||||||||||||||| |  |||||||| | |||||||||| |||||||||||      ||   | |||| |||||| ||||||||||    
T  7629389 aatatttattaaaaattaaaataattaattctgatacttcgtggatacgtatctgcgagtatccg------atacatatccggtacgggttacgtctccg 7629482  T
Q  112 ttttggagtatccgagcttcatag 135  Q
    |||||||||||||| |||||||||    
T  7629483 ttttggagtatccgggcttcatag 7629506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 52204325 - 52204420
Alignment:
Q  20 attaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgtttt 115  Q
    ||||||| ||||||||||||| |  |||||||| | | ||||||||||||||||||| || ||||||||| | |||||||||||||| ||| ||||    
T  52204325 attaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcgagtatccatgaagtatcggtattcgatacgggtacgtttccatttt 52204420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 32834924 - 32834838
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    ||||||| | |||||||||||||||||||||| |||||||  |||||| |||  | |||||| |||||||||||||| |||||||||    
T  32834924 aatatttttaaaaaattaaaataattaacttcaatacttcgcagatacatatatgtgagtattcgtggagtatcggtatccgatacg 32834838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 43471705 - 43471583
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    ||||| |||| ||||||||||||||||| |  |||||| | | | |||||||| | ||||||||   |||||||||| |||||||||| || |||||| |    
T  43471705 aatatatatttaaaattaaaataattaattctgatactccgtgggtacgtatctgagagtatccactgagtatcggtatccgatacggatatgtctccat 43471606  T
Q  113 tttggagtatccgagcttcatag 135  Q
    ||||||||||||| | |||||||    
T  43471605 tttggagtatccgggattcatag 43471583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 36504761 - 36504640
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    ||||||| ||||||||| |||||||||| || |||||||| | | |   |||| ||||||||| || |||||||| | |  |||||||||||||||||||    
T  36504761 aatattttttaaaaatttaaataattaattttgatacttcgtgggtgaatatctgcgagtatctgttgagtatcgatatttgatacgggtacgtctccgt 36504662  T
Q  113 tttggagtatccgagcttcata 134  Q
    ||||||||| | | ||||||||    
T  36504661 tttggagtaccagtgcttcata 36504640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 45472529 - 45472455
Alignment:
Q  24 aaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||| |||||||||| ||| ||||||| | ||| |||||| ||||||||||||||||||||||| |||||||||    
T  45472529 aaaatttaaataattaatttcaatacttcgtggatgcgtatc-gcgagtatccgtggagtatcggtatccgatacg 45472455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 2111341 - 2111226
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtg-------tccgatacgggtacgtctccgttttgg 117  Q
    |||||||||||||||| |   ||||| |||  ||||||||||| ||||||||| |||||||||| |       |||||||||||||||||||| ||||||    
T  2111341 aaattaaaataattaattctaatactccatgaatacgtatccgagagtatccgcggagtatcggcgatacgtttccgatacgggtacgtctccattttgg 2111242  T
Q  118 agtatccgagcttcat 133  Q
    ||||| |||| |||||    
T  2111241 agtattcgagtttcat 2111226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 24120979 - 24120918
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatc 86  Q
    |||||||||||||||| |||||||||   | | |||||||||||||||||||||||||||||    
T  24120979 aaattaaaataattaatttcgatactctgtgggtacgtatccgcgagtatccgtggagtatc 24120918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 24611668 - 24611742
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||| |  |||||| | |  ||||||||||||||||||  ||||||||||||| ||| |||||    
T  24611668 aaattaaaataattaattctgatactccgtgaatacgtatccgcgagtatatgtggagtatcggtatccaatacg 24611742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 36172144 - 36172218
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||| |  |||||| | | | |||||||||| ||||||||  ||||||||||| |||||||||    
T  36172144 aaattaaaataattaattctgatactccgtgggtacgtatccgagagtatccacggagtatcggtatccgatacg 36172218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 12176692 - 12176753
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatc 86  Q
    |||||||||||||||| | ||||||| | | | |||||||||| ||||||||| ||||||||    
T  12176692 aaattaaaataattaattccgatactccgtgggtacgtatccgagagtatccgcggagtatc 12176753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 34026905 - 34026973
Alignment:
Q  21 ttaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggt 89  Q
    |||||||||||||||||||||||| ||||||  |   |||||||| |||||||||| |  |||||||||    
T  34026905 ttaaaaattaaaataattaacttcaatactttgtcagtacgtatctgcgagtatccataaagtatcggt 34026973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 35296363 - 35296311
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatc 65  Q
    ||||||| |||||||||||||||||||| | ||||||||| ||  ||||||||    
T  35296363 aatattttttaaaaattaaaataattaattccgatacttcgtaagtacgtatc 35296311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 14286935 - 14286825
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatcc 124  Q
    |||||||||||||||| | |||||||||||   || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||    
T  14286935 aaattaaaataattaattccgatacttcatgagtatgtatccgcgagtatccgtggagtattggtatccgatacgggtacgtctccgttttggattatcc 14286836  T
Q  125 gagcttcatag 135  Q
    | | |||||||    
T  14286835 gggtttcatag 14286825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 40693858 - 40693772
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||||||||||||||| | | ||||||| | |||||||||||||||||||||||||||||||||| |||||||||    
T  40693858 aatatttattaaaaattaaaataattaattccaatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatccgatacg 40693772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 17116176 - 17116090
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||| ||||||||||||||||||| | ||||||||| | |||||||| ||||||||||||||| ||||||||| |||||||||    
T  17116176 aatatttaataaaaattaaaataattaattccgatacttcgtggatacgtacccgcgagtatccgtgaagtatcggtatccgatacg 17116090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 17936407 - 17936513
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatcc 124  Q
    |||||||||||||||| | ||||||| | | | ||||||| || ||||||||| ||||||||| | || ||||||||||||||||| |||||||||||||    
T  17936407 aaattaaaataattaattccgatactccgtgggtacgtattcgagagtatccgcggagtatcgatatctgatacgggtacgtctccattttggagtatcc 17936506  T
Q  125 gagcttc 131  Q
    |||||||    
T  17936507 gagcttc 17936513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 38683116 - 38683200
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatac 98  Q
    ||||||| |||||||||||||||||||| ||||||||||||| | |||||||  |||||||||||| |||||||||||||||||||    
T  38683116 aatattttttaaaaattaaaataattaatttcgatacttcat-ggtacgtatttgcgagtatccgtagagtatcggtgtccgatac 38683200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 40032575 - 40032453
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatac----gtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtct 108  Q
    ||||||| ||||||||||||||||| || | ||||||||| | | |||    ||||| ||||||||||||||||||||||| |||||||| |||| ||||    
T  40032575 aatattttttaaaaattaaaataataaattccgatacttcgtgggtacatatgtatctgcgagtatccgtggagtatcggtatccgatacaggtatgtct 40032476  T
Q  109 ccgttttggagtatccgagcttc 131  Q
    |||||||| ||||||||| ||||    
T  40032475 ccgttttgaagtatccgaacttc 40032453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 31513812 - 31513888
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggt 89  Q
    |||||||||||||||||||||||||||| | ||||| ||| | |||| ||||||||||||||||||  |||||||||    
T  31513812 aatatttattaaaaattaaaataattaattccgatagttcgtggatatgtatccgcgagtatccgtaaagtatcggt 31513888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 50726591 - 50726515
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggt 89  Q
    |||||||||||||||||||||||||||| | ||||||||| | ||||||||| | ||| |||||||||| |||||||    
T  50726591 aatatttattaaaaattaaaataattaattccgatacttcgtggatacgtattcacgaatatccgtggaatatcggt 50726515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 25294791 - 25294858
Alignment:
Q  68 cgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    |||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||| | |||||||    
T  25294791 cgagtatctgtggagtatcggtatccgatacagggacgtctccgttttggagtatccgggtttcatag 25294858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 50709473 - 50709364
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatcc 124  Q
    |||||||||||||||| | ||||| | | | |||||||||||| || |||||| ||| ||||  | |||||||||| ||||||||| ||||||||||| |    
T  50709473 aaattaaaataattaattccgatagtccgtggatacgtatccgagactatccgcggaatatcaatatccgatacggatacgtctccattttggagtatac 50709374  T
Q  125 gagcttcatag 135  Q
    | |||||||||    
T  50709373 g-gcttcatag 50709364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 4073755 - 4073842
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    |||||||||||||||| | ||||||| ||| | ||||||||| |||||||| | | | ||| ||| |||||| |||||||||||||||    
T  4073755 aaattaaaataattaattccgatactccatgggtacgtatccacgagtatctgcgaaatattggtatccgattcgggtacgtctccgt 4073842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 11767853 - 11767926
Alignment:
Q  26 aattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||| |||||||||| || |||||||| | | | |||||||||||||||||||  ||||||||| |||||||||    
T  11767853 aatttaaataattaattttgatacttcgtgggtgcgtatccgcgagtatccgtaaagtatcggtatccgatacg 11767926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 13558364 - 13558312
Alignment:
Q  71 gtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatc 123  Q
    ||||||||| ||||||| | |||||||| | ||||||||||||||||||||||    
T  13558364 gtatccgtgaagtatcgatatccgatacagatacgtctccgttttggagtatc 13558312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 10443407 - 10443353
Alignment:
Q  80 gagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    |||||||||| ||||||| || |||||||||||||||||||||||| || ||||||    
T  10443407 gagtatcggtatccgatatgg-tacgtctccgttttggagtatccgggcatcatag 10443353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 21149723 - 21149766
Alignment:
Q  56 gatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||    
T  21149723 gatacgtatccgggagtatccgcggagtatcggtatccgatacg 21149766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 25294752 - 25294791
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttc 52  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  25294752 aatatttattaaaaattaaaataattaattccgatacttc 25294791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 30902558 - 30902653
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtct 108  Q
    ||||||| || |||| |||||||||||| |  |||||||  | | |||||||||||||||||| ||| ||| || || ||||||||| ||||||||    
T  30902558 aatatttttttaaaactaaaataattaattctgatactttgtgggtacgtatccgcgagtatctgtgaagtttctgtatccgatacgtgtacgtct 30902653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 4973370 - 4973398
Alignment:
Q  94 gatacgggtacgtctccgttttggagtat 122  Q
    |||||||||||||||||||||||||||||    
T  4973370 gatacgggtacgtctccgttttggagtat 4973398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 22791367 - 22791407
Alignment:
Q  94 gatacgggtacgtctccgttttggagtatccgagcttcata 134  Q
    ||||||||||||||||| ||||||||||||||  |||||||    
T  22791367 gatacgggtacgtctccattttggagtatccggacttcata 22791407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 29488093 - 29488049
Alignment:
Q  91 tccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    ||||||||  |||||||||| |||| |||||||||||||||||||    
T  29488093 tccgatacacgtacgtctccctttttgagtatccgagcttcatag 29488049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 38140510 - 38140400
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    |||||||||||||||||||||||||||| || |||||||||| ||||| |||| ||||  ||||||| | ||||||| || ||||| |||||||||||||    
T  38140510 aatatttattaaaaattaaaataattaattttgatacttcattgatacatatcagcgaacatccgtgaaatatcggtatctgatactggtacgtctccgt 38140411  T
Q  113 tttggagtatc 123  Q
    |||||||||||    
T  38140410 tttggagtatc 38140400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 42794940 - 42795012
Alignment:
Q  17 tttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggt 89  Q
    ||||||||||||||||||||| || |  |||||||||| ||||||||||||||||||||||||||||||||||    
T  42794940 tttattaaaaattaaaataatcaattctgatacttcatggatacgtatccgcgagtatccgtggagtatcggt 42795012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 7017760 - 7017651
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt 112  Q
    ||||||| || |||||| |||||||||| | ||||| ||| | | |||||||||||||||||||||| ||| || || ||||||||||||||||||||||    
T  7017760 aatatttttttaaaatttaaataattaattccgata-ttcgtgggtacgtatccgcgagtatccgtgaagtgtcagtatccgatacgggtacgtctccgt 7017662  T
Q  113 tttggagtatc 123  Q
    |||| ||||||    
T  7017661 tttgaagtatc 7017651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 30382985 - 30383071
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    ||||||| |||||||||||||||||||||| ||||||||| | | ||||||||||||||||| ||||||||||| || ||| |||||    
T  30382985 aatattttttaaaaattaaaataattaactccgatacttcgtgggtacgtatccgcgagtattcgtggagtatctgtatccaatacg 30383071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 38221808 - 38221929
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcg-----------gtgtccgatacggg 101  Q
    ||||||| ||||||||| |||||||||| | ||||||||| | | | ||||||||||||||||||||||||||||           || |||||||||||    
T  38221808 aatattttttaaaaatttaaataattaattccgatacttcgtgggtgcgtatccgcgagtatccgtggagtatcggtatccaatacgtatccgatacggg 38221907  T
Q  102 tacgtctccgttttggagtatc 123  Q
    ||||||||||||||||||||||    
T  38221908 tacgtctccgttttggagtatc 38221929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 40498509 - 40498426
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgat 96  Q
    ||||||| ||||||||| |||||||||| ||||||||||| | | | ||||||| |||||||| ||||||||||||| ||||||    
T  40498509 aatattttttaaaaatttaaataattaagttcgatacttcgtgggtgcgtatccacgagtatctgtggagtatcggtatccgat 40498426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 11562916 - 11562991
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggt 89  Q
    ||||||| | |||||||||||| ||||| | || |||||| | |||||||||||||||||||||||| |||||||||    
T  11562916 aatatttttaaaaaattaaaattattaa-tccggtacttcgtggatacgtatccgcgagtatccgtgaagtatcggt 11562991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 17328557 - 17328513
Alignment:
Q  91 tccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    |||||| |||||||||||||||||||||||||| | |||||||||    
T  17328557 tccgatgcgggtacgtctccgttttggagtatctgtgcttcatag 17328513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 14749485 - 14749411
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||| |  |||||| | | | |||||||||| ||||||||| ||||||||||  |||||||||    
T  14749485 aaattaaaataattaattctgatactccgtgggtacgtatccgagagtatccgcggagtatcggaatccgatacg 14749411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 26352509 - 26352435
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||| | |||||||   | | |||||||||||||||||| ||| ||||||||| || ||||||    
T  26352509 aaattaaaataattaattccgatactcagtgggtacgtatccgcgagtatctgtgaagtatcggtatctgatacg 26352435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 35428688 - 35428594
Alignment:
Q  30 aaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgt-tttggagtatc 123  Q
    ||||||||||| ||  ||||||| |   |||||||  ||||||||   |||||||||||| |||||||| ||||||||||||| |||||||||||    
T  35428688 aaaataattaattttaatacttcgtgagtacgtatttgcgagtatatatggagtatcggtatccgatacaggtacgtctccgtatttggagtatc 35428594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 41323762 - 41323708
Alignment:
Q  81 agtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatag 135  Q
    |||||| || || ||||||||||||| |||||||||||||||||  |||||||||    
T  41323762 agtatcagtatctgatacgggtacgtgtccgttttggagtatccaggcttcatag 41323708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 18858343 - 18858270
Alignment:
Q  65 ccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatagttt 138  Q
    ||||||||||||||||||||||| | ||||||||  ||||| |||| ||||| ||||| |   |||||||||||    
T  18858343 ccgcgagtatccgtggagtatcgatatccgatacatgtacgcctccattttgaagtattcagacttcatagttt 18858270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 36467125 - 36467052
Alignment:
Q  25 aaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatac 98  Q
    |||||||||||||||| | ||||||||| |   ||||||| | | |||||| ||||||||||||| ||||||||    
T  36467125 aaattaaaataattaattccgatacttcgtgagtacgtattcacaagtatctgtggagtatcggtatccgatac 36467052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 42795033 - 42795069
Alignment:
Q  99 gggtacgtctccgttttggagtatccgagcttcatag 135  Q
    |||||||||||||||||||||||| || |||||||||    
T  42795033 gggtacgtctccgttttggagtattcgggcttcatag 42795069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 7831 - 7745
Alignment:
Q  13 aatatttattaaaaattaaaataattaacttcgatacttcatagatacgtatccgcgagtatccgtggagtatcggtgtccgatacg 99  Q
    |||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||| |||||||||| || ||||||    
T  7831 aatatttattaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtatccgtagagtatcggtatctgatacg 7745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 6044 - 5967
Alignment:
Q  60 cgtatccgcgagtatccgtggagtatcggtgtccgatacgggtacgtctccgttttggagtatccgagcttcatagtt 137  Q
    ||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||| |||||||   ||||||||||    
T  6044 cgtatccgcgaatatacgtggagtatcggtatctgatacgggtacgtctccgttttgaagtatccagacttcatagtt 5967  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 38481 - 38549
Alignment:
Q  21 ttaaaaattaaaataattaacttcgatacttc----atagatacgtatccgcgagtatccgtggagtat 85  Q
    |||||||||||||||||||| |||||||||||     ||  ||||||||||||||||| ||||||||||    
T  38481 ttaaaaattaaaataattaatttcgatacttcgtgggtacgtacgtatccgcgagtattcgtggagtat 38549  T

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