View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1996_low_3 (Length: 551)
Name: NF1996_low_3
Description: NF1996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1996_low_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 19 - 540
Target Start/End: Complemental strand, 134985 - 134464
Alignment:
| Q |
19 |
ctttgaccgaaacatttgaggctaggaagcttctgcagttcaataatcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
134985 |
ctttgaccgaaacatttgaggctaggaagcttctgcagttcaatcttcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggat |
134886 |
T |
|
| Q |
119 |
tgcaattattcccaatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
134885 |
tgcaattattcccaatgatctccttcatcttctggcattcatacacaccaattaaccacaaatttggaatgcttgtgagcacggaaacatccggaagaac |
134786 |
T |
|
| Q |
219 |
atattccaaatcattgcacttatagatgattatcatttgtaaacactcaaatccttgacaatggtttttccaaatgtgcttcagttttggaagagacttc |
318 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
134785 |
atattccaaatcattgcactcatagatgattatcaattgtaaacaatcgaatccttgacaatggtttttccaaatgtgcttcagttttggaagagaaagc |
134686 |
T |
|
| Q |
319 |
aatattaagaacaatagctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtg |
418 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
134685 |
aattttaagaacactagctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtg |
134586 |
T |
|
| Q |
419 |
agaataagtgcatcatgttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttc |
518 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
134585 |
ataataagtgcatcatgttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttc |
134486 |
T |
|
| Q |
519 |
gtccatatctttaaacgtctct |
540 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
134485 |
gtccatatctttaaacgtctct |
134464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 113 - 483
Target Start/End: Complemental strand, 157409 - 157035
Alignment:
| Q |
113 |
taggattgcaattattcccaatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccgg |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| | |
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|
| T |
157409 |
taggattgtaattattcccaatgatctccttcatcttctggcattcatacacaccgataaaccacaaatttggaatgcttgtgagcacggaaacatccag |
157310 |
T |
|
| Q |
213 |
aagaacatattccaaatcattgcacttatagatgattatcatttgtaaacactcaaatccttgacaat----ggtttttccaaatgtgcttcagttttgg |
308 |
Q |
| |
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|||||||||||||||||||||||| | | |||||||| || || ||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
157309 |
aagaacatattccaaatcattgcagtccttgatgattaacaattctaaacactcgaatccttgacaattaatgatttttccaaatgtgcttcagttttgg |
157210 |
T |
|
| Q |
309 |
aagagacttcaatattaagaacaatagctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttc |
408 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||||| | ||| | |||| | |
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|
| T |
157209 |
aagagaaaacaattttaagaacaatagctcccactgcaacatgcgatcggttgatttaaatatctcttctaagcactcacattcaatcacaaatagttcc |
157110 |
T |
|
| Q |
409 |
tccaaatgtgagaataagtgcatcatgttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaagg |
483 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
157109 |
ttcaaatgtgagaataagtgcatcatgttggatgggatgcaattcaatagcttgtgaaagtttacaatgtcaagg |
157035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 27 - 540
Target Start/End: Complemental strand, 34377472 - 34376968
Alignment:
| Q |
27 |
gaaacatttgaggctaggaagcttctgcagttcaataatcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggattgcaatta |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| |||| | || ||||||||||| |||||||||||||||| | |||||| |
|
|
| T |
34377472 |
gaaacatttgaggctaggaagcttctttagtttaattttcatcagctttgggaatttaatcttagctttctgttgtaaa---------------caatta |
34377388 |
T |
|
| Q |
127 |
ttcccaatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattcca |
226 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||| ||| ||| |||| |||||| |||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
34377387 |
ttcccaatgatctccttcatcttctcgcattcagacacatgaatcgacatcaaacttggaaggcttgtgaccacggaaacatccggaatcacatattcca |
34377288 |
T |
|
| Q |
227 |
aatcattgcacttatagatgattatcatttgtaaacactcaaatc------cttgacaatggtttttccaaatgtgcttcagttttggaagagacttcaa |
320 |
Q |
| |
|
||||||||||||| | ||| ||||| ||||||| || | || | ||||| ||| |||||||| ||||||||||||||||||||| | | ||| |
|
|
| T |
34377287 |
aatcattgcacttcttgatccttatctcttgtaaatacccgaaccttaaagtttgaccatgatttttccagatgtgcttcagttttggaagacaatacaa |
34377188 |
T |
|
| Q |
321 |
tattaagaacaatagctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgag |
420 |
Q |
| |
|
|||||| | ||| || |||||||| ||||||||| ||||||||||||||||| ||||| |||||||||| || || | || || || ||||||| |
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|
| T |
34377187 |
atttaagacctctagttcacactgcaagatgctatcatttgattcaaatatctctactaagcactcacattctttcactgttagagacttcacatgtgag |
34377088 |
T |
|
| Q |
421 |
aataagtgcatcatgttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgt |
520 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
34377087 |
aataattgcatcatgttggatgggatgcaattcaatagcttatgacagtttacaatctcaagcactattactcttttgatgtagccaagaagctcttcat |
34376988 |
T |
|
| Q |
521 |
ccatatctttaaacgtctct |
540 |
Q |
| |
|
|||||||| |||| |||||| |
|
|
| T |
34376987 |
ccatatctctaaatgtctct |
34376968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 121 - 540
Target Start/End: Original strand, 34549987 - 34550418
Alignment:
| Q |
121 |
caattattcccaatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacat |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| ||||| ||| ||| |||| |||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
34549987 |
caattattcctaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccggaatcacat |
34550086 |
T |
|
| Q |
221 |
attccaaatcattgcacttatagatgattatcatttgtaaacactcaaatcct------tgacaatggtttttccaaatgtgcttcagttttggaagaga |
314 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| || ||||||| | || | | |||| ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
34550087 |
attccaaatcattgcacttcttgatccttatctcttctaaacacccgaaccttaaagtttgaccatgatttttccatatgtgcttcagttttggaagaga |
34550186 |
T |
|
| Q |
315 |
cttcaat---att---aagaacaatagctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttc |
408 |
Q |
| |
|
|||| ||| |||| | ||| || |||||||| ||||||||| ||||||||||||||||| ||||| |||||||||| || || | || | |
|
|
| T |
34550187 |
aaacaattctatttctaagacctctagttcacactgcaagatgctatcatttgattcaaatatctctactaagcactcacattctttcactgttagagac |
34550286 |
T |
|
| Q |
409 |
tccaaatgtgagaataagtgcatcatgttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaa |
508 |
Q |
| |
|
| || |||||||||||| ||||||||||||||||| ||||||||||||||||||| | | |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
34550287 |
ttcacatgtgagaataattgcatcatgttggatggaatgcaattcaatagcttgttaaactttacaatgtcaagatttgttactcttttgatgtagccaa |
34550386 |
T |
|
| Q |
509 |
gaagctcttcgtccatatctttaaacgtctct |
540 |
Q |
| |
|
||||||||| || |||||| |||| |||||| |
|
|
| T |
34550387 |
caagctcttcatctatatctctaaatgtctct |
34550418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 352 - 540
Target Start/End: Original strand, 15891058 - 15891246
Alignment:
| Q |
352 |
ctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataagtgcatcatgttggatgggatgcaat |
451 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | ||||||| ||| ||| ||| || ||||||||||||||||||| |||| | |||||||||| |
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|
| T |
15891058 |
ctatcatttgattcaaatatctcttctaagcccccacattctcgcacattgagaatctgcatatgtgagaataagtgcatcttgttcgctgggatgcaac |
15891157 |
T |
|
| Q |
452 |
tcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaaacgtctct |
540 |
Q |
| |
|
|||| ||||||||||| ||| |||||| | | |||||||||| |||||||| ||| ||||||||| | |||||| |||| |||||| |
|
|
| T |
15891158 |
tcaacagcttgtgacactttttaatgtcgatctttgttactcttctgatgtaggcaacaagctcttcattgatatctctaaatgtctct |
15891246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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